Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032265.2 Cucumis melo HOM05D003346 ORTHO05D000921 2.8e-79 298.5 145 100.0
MELO3C018573.2 Cucumis melo HOM05D003346 ORTHO05D003961 4.1e-14 82.0 69 65.2
CsaV3_7G007250 Cucumis sativus L. HOM05D003346 ORTHO05D003961 1.2e-13 80.5 77 59.7
ClCG09G016330 Citrullus lanatus HOM05D003346 ORTHO05D003961 2.0e-13 79.7 69 63.8
Thhalv10014221m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 3.0e-09 65.9 81 45.7
Sed0004910 Sechium edule HOM05D003346 ORTHO05D003961 3.0e-09 65.9 54 61.1
ClCG03G008640 Citrullus lanatus HOM05D007209 ORTHO05D000921 6.7e-09 64.7 36 77.8
MELO3C033464.2 Cucumis melo HOM05D007209 ORTHO05D000921 6.7e-09 64.7 45 71.1
MELO3C034962.2 Cucumis melo HOM05D007209 ORTHO05D000921 8.8e-09 64.3 36 77.8
MELO3C035462.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.1e-08 63.9 40 77.5
Sed0020205 Sechium edule HOM05D003346 ORTHO05D003961 1.1e-08 63.9 53 67.9
AL6G20070 Arabidopsis lyrata HOM05D003346 ORTHO05D003961 2.0e-08 63.2 80 42.5
MELO3C032092.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.0e-08 63.2 117 38.5
CARHR203740 Cardamine hirsuta HOM05D003346 ORTHO05D003961 2.5e-08 62.8 81 43.2
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.5e-08 62.8 49 63.3
BcaB01g05664 Brassica carinata HOM05D003346 ORTHO05D003961 3.3e-08 62.4 69 47.8
QL11p027476 Quercus lobata HOM05D003346 ORTHO05D003961 3.3e-08 62.4 44 68.2
BcaB01g05568 Brassica carinata HOM05D003346 ORTHO05D003961 4.3e-08 62.0 52 57.7
A03p04200 Brassica napus HOM05D002845 ORTHO05D003180 4.3e-08 62.0 46 65.2
C03p04650 Brassica napus HOM05D002845 ORTHO05D003180 4.3e-08 62.0 52 57.7
BolC3t12997H Brassica oleracea HOM05D003346 ORTHO05D003961 4.3e-08 62.0 52 57.7
BraA03t09765Z Brassica rapa HOM05D003346 ORTHO05D003961 4.3e-08 62.0 46 65.2
MELO3C030265.2 Cucumis melo HOM05D007209 ORTHO05D000921 4.3e-08 62.0 47 63.8
Sp6g33730 Schrenkiella parvula HOM05D003346 ORTHO05D003961 4.3e-08 62.0 68 50.0
BcaB05g21541 Brassica carinata HOM05D003346 ORTHO05D003961 7.4e-08 61.2 43 62.8
TAR628G0837 Trochodendron aralioides HOM05D003346 ORTHO05D003961 7.4e-08 61.2 41 73.2
Actinidia29267 Actinidia chinensis HOM05D003346 ORTHO05D003961 9.7e-08 60.8 51 60.8
A02p00080 Brassica napus HOM05D003346 ORTHO05D003961 1.3e-07 60.5 85 42.4
BraA02t04993Z Brassica rapa HOM05D003346 ORTHO05D003961 1.3e-07 60.5 85 42.4
ClCG09G017120 Citrullus lanatus HOM05D007209 ORTHO05D000921 1.3e-07 60.5 36 72.2
Carub.0003s2760 Capsella rubella HOM05D003346 ORTHO05D003961 1.7e-07 60.1 81 42.0
MD05G1051000 Malus domestica HOM05D003346 ORTHO05D003961 1.7e-07 60.1 44 59.1
Nn1g05959 Nelumbo nucifera HOM05D003346 ORTHO05D003961 1.7e-07 60.1 41 70.7
CiPaw.06G161600 Carya illinoinensis HOM05D003346 ORTHO05D003961 2.2e-07 59.7 44 63.6
COL.COLO4_35344 Corchorus olitorius HOM05D003346 ORTHO05D003961 2.2e-07 59.7 45 62.2
MELO3C028998.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.2e-07 59.7 36 72.2
Gohir.D01G169700 Gossypium hirsutum HOM05D003346 ORTHO05D003961 2.2e-07 59.7 43 67.4
Gorai.002G211300 Gossypium raimondii HOM05D003346 ORTHO05D003961 2.2e-07 59.7 43 67.4
TWI23G0433 Tripterygium wilfordii HOM05D003346 ORTHO05D003961 2.2e-07 59.7 42 66.7
HanXRQChr09g0250791 Helianthus annuus HOM05D003346 ORTHO05D003961 2.8e-07 59.3 47 59.6
TAR376G0743 Trochodendron aralioides HOM05D003346 ORTHO05D003961 2.8e-07 59.3 41 70.7
Aqoxy6G00611 Aquilegia oxysepala HOM05D003346 ORTHO05D003961 3.7e-07 58.9 42 64.3
Lsat_1_v5_gn_7_83301 Lactuca sativa HOM05D003346 ORTHO05D003961 3.7e-07 58.9 42 66.7
THA.LOC104820153 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 3.7e-07 58.9 43 60.5
Cpa.g.sc20.58 Carica papaya HOM05D003346 ORTHO05D003961 4.8e-07 58.5 43 67.4
ClCG07G007780 Citrullus lanatus HOM05D007209 ORTHO05D000921 4.8e-07 58.5 34 73.5
Gohir.A12G031300 Gossypium hirsutum HOM05D003346 ORTHO05D003961 4.8e-07 58.5 43 67.4
Gohir.D12G041000 Gossypium hirsutum HOM05D003346 ORTHO05D003961 4.8e-07 58.5 43 67.4
Gorai.008G042800 Gossypium raimondii HOM05D003346 ORTHO05D003961 4.8e-07 58.5 43 67.4
Atru.chr6.1393 Acer truncatum HOM05D003346 ORTHO05D003961 6.3e-07 58.2 54 57.4
Duzib052G1149 Durio zibethinus HOM05D003346 ORTHO05D003961 6.3e-07 58.2 43 65.1
Gohir.A04G127800 Gossypium hirsutum HOM05D003346 ORTHO05D003961 6.3e-07 58.2 42 66.7
Gohir.D04G172500 Gossypium hirsutum HOM05D003346 ORTHO05D003961 6.3e-07 58.2 42 66.7
Potri.009G081200 Populus trichocarpa HOM05D003346 ORTHO05D003961 6.3e-07 58.2 43 62.8
THA.LOC104804563 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 6.3e-07 58.2 59 49.2
Dinv08954 Davidia involucrata HOM05D003346 ORTHO05D003961 8.2e-07 57.8 76 46.1
Dinv16043 Davidia involucrata HOM05D003346 ORTHO05D003961 8.2e-07 57.8 50 56.0
Eucgr.G01119 Eucalyptus grandis HOM05D003346 ORTHO05D003961 8.2e-07 57.8 42 57.1
Eucgr.G01121 Eucalyptus grandis HOM05D003346 ORTHO05D003961 8.2e-07 57.8 42 57.1
Gorai.012G161500 Gossypium raimondii HOM05D003346 ORTHO05D003961 8.2e-07 57.8 42 66.7
THA.LOC104818456 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 8.2e-07 57.8 59 47.5
Thecc.02G036500 Theobroma cacao HOM05D003346 ORTHO05D003961 8.2e-07 57.8 43 65.1
VMungo0540G0002 Vigna mungo HOM05D003346 ORTHO05D003961 8.2e-07 57.8 40 60.0
GSVIVG01036954001 Vitis vinifera HOM05D003346 ORTHO05D003961 8.2e-07 57.8 48 54.2
Cc02_g20460 Coffea canephora HOM05D003346 ORTHO05D003961 1.1e-06 57.4 55 54.5
MELO3C035039.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.1e-06 57.4 36 66.7
Oeu014212.2 Olea europaea HOM05D003346 ORTHO05D003961 1.1e-06 57.4 44 59.1
Potri.001G286900 Populus trichocarpa HOM05D003346 ORTHO05D003961 1.1e-06 57.4 51 52.9
RcHm_v2.0_Chr6g0269081 Rosa chinensis HOM05D003346 ORTHO05D003961 1.1e-06 57.4 42 59.5
Aa31LG3G17420 Aethionema arabicum HOM05D003346 ORTHO05D003961 1.4e-06 57.0 81 42.0
AT5G09650 Arabidopsis thaliana HOM05D003346 ORTHO05D003961 1.4e-06 57.0 58 48.3
Ciclev10028967m.g Citrus clementina HOM05D003346 ORTHO05D003961 1.4e-06 57.0 55 49.1
Lsat_1_v5_gn_9_114300 Lactuca sativa HOM05D003346 ORTHO05D003961 1.4e-06 57.0 73 46.6
Manes.07G048300 Manihot esculenta HOM05D003346 ORTHO05D003961 1.4e-06 57.0 44 61.4
Thecc.08G078600 Theobroma cacao HOM05D003346 ORTHO05D003961 1.4e-06 57.0 41 61.0
vmacro19585 Vaccinium macrocarpon HOM05D003346 ORTHO05D003961 1.4e-06 57.0 51 56.9
Actinidia28012 Actinidia chinensis HOM05D003346 ORTHO05D003961 1.8e-06 56.6 77 42.9
CSS0013432 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 1.8e-06 56.6 41 61.0
CAN.G504.61 Capsicum annuum HOM05D003346 ORTHO05D003961 1.8e-06 56.6 41 61.0
Glyma.15G061300 Glycine max HOM05D003346 ORTHO05D003961 1.8e-06 56.6 40 60.0
Gohir.A01G178900 Gossypium hirsutum HOM05D003346 ORTHO05D003961 1.8e-06 56.6 43 65.1
Lj5C224G7 Lonicera japonica HOM05D003346 ORTHO05D003961 1.8e-06 56.6 43 60.5
Nitab4.5_0009020g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 1.8e-06 56.6 50 54.0
Prupe.8G077800 Prunus persica HOM05D003346 ORTHO05D003961 1.8e-06 56.6 67 47.8
PGR042G2549 Punica granatum HOM05D003346 ORTHO05D003961 1.8e-06 56.6 44 59.1
MD17G1239600 Malus domestica HOM05D003346 ORTHO05D003961 2.4e-06 56.2 55 49.1
Phvul.006G198500 Phaseolus vulgaris HOM05D003346 ORTHO05D003961 2.4e-06 56.2 40 57.5
arahy.Tifrunner.gnm1.ann1.RLY5XN Arachis hypogaea HOM05D003346 ORTHO05D003961 3.1e-06 55.8 54 53.7
Thhalv10004681m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 3.1e-06 55.8 72 44.4
FAN15G0783 Fragaria x ananassa HOM05D003346 ORTHO05D003961 3.1e-06 55.8 44 61.4
FAN20G2153 Fragaria x ananassa HOM05D003346 ORTHO05D003961 3.1e-06 55.8 44 61.4
FAN24G2235 Fragaria x ananassa HOM05D003346 ORTHO05D003961 3.1e-06 55.8 44 61.4
Hma1.2p1_2001F.1_g310680 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 3.1e-06 55.8 42 57.1
PSO210G2397 Papaver somniferum HOM05D003346 ORTHO05D003961 3.1e-06 55.8 42 52.4
PSO761G0299 Papaver somniferum HOM05D003346 ORTHO05D003961 3.1e-06 55.8 42 52.4
PSO782G2665 Papaver somniferum HOM05D003346 ORTHO05D003961 3.1e-06 55.8 42 54.8
SEGI_02374 Sequoiadendron giganteum HOM05D003346 ORTHO05D003961 3.1e-06 55.8 46 54.3
arahy.Tifrunner.gnm1.ann1.W9Z0UK Arachis hypogaea HOM05D003346 ORTHO05D003961 4.1e-06 55.5 53 50.9
CSS0048261 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 4.1e-06 55.5 41 58.5
FvH4_2g10920 Fragaria vesca HOM05D003346 ORTHO05D003961 4.1e-06 55.5 66 50.0
FAN27G2531 Fragaria x ananassa HOM05D003346 ORTHO05D003961 4.1e-06 55.5 44 59.1
HanXRQChr05g0150331 Helianthus annuus HOM05D003346 ORTHO05D003961 4.1e-06 55.5 41 61.0
Sabra09G0062900 Salix brachista HOM05D003346 ORTHO05D003961 4.1e-06 55.5 43 60.5
SalBow6G1029 Salvia bowleyana HOM05D003346 ORTHO05D003961 4.1e-06 55.5 53 49.1
PGSC0003DMG400026784 Solanum tuberosum HOM05D003346 ORTHO05D003961 4.1e-06 55.5 53 49.1
Duzib132G0992 Durio zibethinus HOM05D003346 ORTHO05D003961 5.3e-06 55.1 43 67.4
Lj1g0009168 Lotus japonicus HOM05D003346 ORTHO05D003961 5.3e-06 55.1 37 62.2
Lalb_Chr18g0060231 Lupinus albus HOM05D003346 ORTHO05D003961 5.3e-06 55.1 44 52.3
MD10G1058400 Malus domestica HOM05D003346 ORTHO05D003961 5.3e-06 55.1 44 56.8
PSO170G1170 Papaver somniferum HOM05D003346 ORTHO05D003961 5.3e-06 55.1 42 57.1
Sabra16G0179400 Salix brachista HOM05D003346 ORTHO05D003961 6.9e-06 54.7 52 51.9
TPR.G32666 Trifolium pratense HOM05D003346 ORTHO05D003961 6.9e-06 54.7 37 59.5
CDE07G1052 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 9.1e-06 54.3 42 61.9


User provided reference genes

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