Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.1e-95 353.2 175 100.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.8e-80 302.8 151 100.0
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 6.7e-80 300.8 151 99.3
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.5e-79 299.7 151 98.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.7e-75 286.2 155 89.7
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.9e-75 285.4 151 92.7
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.5e-75 283.9 151 91.4
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 8.5e-75 283.9 151 92.7
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.1e-74 283.5 151 91.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.4e-74 283.1 151 92.1
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.4e-74 283.1 151 92.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.5e-74 282.3 151 90.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 3.2e-74 282.0 151 92.7
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.2e-74 282.0 151 92.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 3.2e-74 282.0 151 92.7
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 4.2e-74 281.6 155 88.4
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.2e-74 281.6 151 92.1
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 5.5e-74 281.2 151 90.1
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.5e-74 281.2 151 90.1
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 7.2e-74 280.8 151 91.4
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 7.2e-74 280.8 151 91.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 7.2e-74 280.8 155 87.7
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 9.4e-74 280.4 151 90.1
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.6e-73 279.6 155 86.5
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 2.1e-73 279.3 151 90.1
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.1e-73 279.3 151 90.7
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.6e-73 278.5 155 88.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 3.6e-73 278.5 151 92.1
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 3.6e-73 278.5 151 90.7
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 3.6e-73 278.5 155 87.7
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 3.6e-73 278.5 155 87.7
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 4.7e-73 278.1 151 89.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.7e-73 278.1 155 85.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 4.7e-73 278.1 155 85.8
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 6.1e-73 277.7 151 91.4
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 7.9e-73 277.3 151 90.7
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.0e-72 276.9 151 90.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.0e-72 276.9 151 90.1
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.0e-72 276.9 151 90.1
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.0e-72 276.9 151 90.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.0e-72 276.9 151 90.1
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.4e-72 276.6 151 90.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.8e-72 276.2 151 90.1
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.3e-72 275.8 151 90.7
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.3e-72 275.8 151 88.7
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.3e-72 275.8 151 90.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 3.9e-72 275.0 151 89.4
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 6.7e-72 274.2 151 88.1
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 6.7e-72 274.2 151 89.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 6.7e-72 274.2 151 90.1
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.5e-71 273.1 151 87.4
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.5e-71 273.1 151 87.4
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.0e-71 272.7 155 86.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 2.0e-71 272.7 151 88.7
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.6e-71 272.3 151 87.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.6e-71 272.3 147 91.2
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.6e-71 272.3 151 87.4
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.6e-71 272.3 163 82.2
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.6e-71 272.3 151 88.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.3e-71 271.9 151 86.8
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 3.3e-71 271.9 151 86.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.3e-71 271.9 151 87.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.3e-71 271.9 151 89.4
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.4e-71 271.6 151 87.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.7e-71 271.2 151 88.1
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 9.7e-71 270.4 151 87.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 9.7e-71 270.4 150 88.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 9.7e-71 270.4 151 86.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.3e-70 270.0 151 86.1
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-70 270.0 151 86.8
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-70 270.0 151 86.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.3e-70 270.0 151 86.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.2e-70 269.2 151 86.8
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.2e-70 269.2 151 86.8
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 2.2e-70 269.2 151 86.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 2.2e-70 269.2 151 87.4
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.2e-70 269.2 151 87.4
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.8e-70 268.9 151 86.8
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 3.7e-70 268.5 151 86.8
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-70 268.5 151 86.8
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.7e-70 268.5 151 86.8
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.7e-70 268.5 151 86.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 3.7e-70 268.5 151 87.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.8e-70 268.1 151 86.8
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.1e-69 266.9 151 88.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.1e-69 266.9 185 74.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-69 266.9 155 85.8
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 5.3e-69 264.6 151 86.1
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 7.0e-69 264.2 151 85.4
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.7e-67 259.6 151 84.8
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.5e-67 257.7 135 91.9
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.5e-66 256.5 179 74.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.6e-65 251.9 198 66.7
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.8e-64 249.6 151 80.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.0e-64 248.8 151 83.4
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.7e-64 247.7 151 75.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.6e-63 245.7 151 79.5
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.3e-63 245.4 151 77.5
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 3.7e-62 241.9 135 85.2
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.1e-61 240.4 151 76.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.1e-61 238.4 151 77.5
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.6e-60 236.5 151 76.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.7e-60 234.2 151 76.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.0e-59 233.8 151 76.2
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.4e-56 223.4 155 68.4
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.0e-55 219.5 123 84.6
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.6e-55 219.2 151 76.2
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 5.7e-55 218.0 155 69.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.7e-54 215.3 129 81.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 3.0e-48 195.7 138 72.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 9.8e-47 190.7 99 92.9
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.9e-42 176.4 151 56.3
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 7.2e-42 174.5 151 61.6
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.1e-41 172.9 151 55.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 6.1e-41 171.4 109 77.1
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.4e-37 158.3 151 60.3
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 3.5e-36 155.6 82 90.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.3e-34 148.7 105 70.5
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 8.3e-30 134.4 160 45.6
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.1e-21 105.5 169 35.5
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 3.0e-19 99.4 54 92.6
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 4.3e-18 95.5 113 50.4
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.4e-14 81.6 54 74.1
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 6.4e-14 81.6 44 79.5
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 6.4e-14 81.6 52 76.9
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 7.8e-12 74.7 88 50.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.5e-10 70.5 101 42.6
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 8.1e-09 64.7 30 90.0
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.0e-07 60.1 56 62.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 4.4e-07 58.9 87 43.7


User provided reference genes

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