Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032151.2 Cucumis melo HOM05D009856 ORTHO05D169514 6.8e-60 233.8 118 100.0
MELO3C034370.2 Cucumis melo HOM05D009856 ORTHO05D168074 3.9e-15 85.1 48 89.6
MELO3C033437.2 Cucumis melo HOM05D009856 ORTHO05D167366 1.1e-14 83.6 57 77.2
MELO3C033060.2 Cucumis melo HOM05D009856 ORTHO05D169123 4.3e-14 81.6 48 83.3
MELO3C028863.2 Cucumis melo HOM05D009856 ORTHO05D168249 2.6e-11 72.4 42 85.7
Duzib268G1391 Durio zibethinus HOM05D000278 ORTHO05D004371 2.6e-11 72.4 39 89.7
EL10Ac7g16286 Beta vulgaris HOM05D000278 ORTHO05D004371 5.8e-11 71.2 64 60.9
Cfa007938 Carpinus fangiana HOM05D000278 ORTHO05D004371 5.8e-11 71.2 39 89.7
ClCG11G005410 Citrullus lanatus HOM05D000278 ORTHO05D004371 5.8e-11 71.2 39 89.7
Haze_14140 Corylus avellana HOM05D000278 ORTHO05D004371 5.8e-11 71.2 39 89.7
Nn3g17785 Nelumbo nucifera HOM05D000278 ORTHO05D004371 5.8e-11 71.2 39 89.7
TWI53G0964 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 5.8e-11 71.2 39 89.7
MELO3C022094.2 Cucumis melo HOM05D000278 ORTHO05D004371 7.6e-11 70.9 39 87.2
Sabra17G0093800 Salix brachista HOM05D000278 ORTHO05D004371 7.6e-11 70.9 105 44.8
Sed0012233 Sechium edule HOM05D000278 ORTHO05D004371 7.6e-11 70.9 39 87.2
Atru.chr2.1903 Acer truncatum HOM05D000278 ORTHO05D004371 1.3e-10 70.1 39 87.2
Manes.02G067400 Manihot esculenta HOM05D000278 ORTHO05D004371 1.3e-10 70.1 39 87.2
Thecc.03G064200 Theobroma cacao HOM05D000278 ORTHO05D004371 1.3e-10 70.1 39 87.2
TAR374G0266 Trochodendron aralioides HOM05D000278 ORTHO05D004371 1.3e-10 70.1 39 87.2
CsaV3_5G039190 Cucumis sativus L. HOM05D000278 ORTHO05D004371 1.7e-10 69.7 39 87.2
Phvul.008G004500 Phaseolus vulgaris HOM05D000278 ORTHO05D004371 1.7e-10 69.7 39 84.6
TWI74G0032 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 1.7e-10 69.7 39 87.2
Actinidia26297 Actinidia chinensis HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Actinidia26321 Actinidia chinensis HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Ah.01g008100 Amaranthus hybridus HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
DCAR_025918 Daucus carota HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Gohir.A12G271300 Gossypium hirsutum HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Gohir.D12G271900 Gossypium hirsutum HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Gorai.008G292300 Gossypium raimondii HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
HanXRQChr15g0483021 Helianthus annuus HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Lj2C446G3 Lonicera japonica HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Manes.01G108900 Manihot esculenta HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
Sed0004153 Sechium edule HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 84.6
THA.LOC104827154 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
TAR371G1168 Trochodendron aralioides HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 84.6
GSVIVG01031067001 Vitis vinifera HOM05D000278 ORTHO05D004371 2.2e-10 69.3 39 87.2
COL.COLO4_16182 Corchorus olitorius HOM05D000278 ORTHO05D004371 2.9e-10 68.9 47 72.3
Duzib133G0655 Durio zibethinus HOM05D000278 ORTHO05D004371 2.9e-10 68.9 39 87.2
Lalb_Chr02g0158261 Lupinus albus HOM05D000278 ORTHO05D004371 2.9e-10 68.9 39 84.6
QL02p051602 Quercus lobata HOM05D000278 ORTHO05D004371 2.9e-10 68.9 39 84.6
QL07p018371 Quercus lobata HOM05D000278 ORTHO05D004371 2.9e-10 68.9 39 84.6
ATR0665G222 Amborella trichopoda HOM05D000278 ORTHO05D004371 3.8e-10 68.6 46 73.9
CiPaw.03G060500 Carya illinoinensis HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
Eucgr.F02483 Eucalyptus grandis HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
Nn4g23776 Nelumbo nucifera HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
PSO017G1475 Papaver somniferum HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
PSO478G1705 Papaver somniferum HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
THA.LOC104803003 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 3.8e-10 68.6 39 84.6
Os05g0147400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004371 4.9e-10 68.2 39 84.6
Potri.004G101500 Populus trichocarpa HOM05D000278 ORTHO05D004371 4.9e-10 68.2 39 84.6
Sabra04G0078800 Salix brachista HOM05D000278 ORTHO05D004371 4.9e-10 68.2 39 84.6
Sc11g0008250 Simmondsia chinensis HOM05D000278 ORTHO05D004371 4.9e-10 68.2 39 84.6
Actinidia15874 Actinidia chinensis HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
BcaC05g30369 Brassica carinata HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
BraA06t23298Z Brassica rapa HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
Carub.0006s1426 Capsella rubella HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
Carub.0055s0007 Capsella rubella HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
CARHR076530 Cardamine hirsuta HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
AUR62020221 Chenopodium quinoa HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 82.1
Thhalv10020484m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
MD17G1104900 Malus domestica HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 82.1
RcHm_v2.0_Chr2g0098621 Rosa chinensis HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 82.1
Sp3g01560 Schrenkiella parvula HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
VMungo1383G1335 Vigna mungo HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 82.1
Zm00001eb111720 Zea mays HOM05D000278 ORTHO05D004371 6.4e-10 67.8 39 84.6
ATR0564G545 Amborella trichopoda HOM05D000278 ORTHO05D004371 8.4e-10 67.4 39 84.6
AUR62001562 Chenopodium quinoa HOM05D000278 ORTHO05D004371 8.4e-10 67.4 39 79.5
Ciclev10011450m.g Citrus clementina HOM05D000278 ORTHO05D004371 8.4e-10 67.4 39 79.5
Dinv34840 Davidia involucrata HOM05D000278 ORTHO05D004371 8.4e-10 67.4 39 79.5
FAN26G1581 Fragaria x ananassa HOM05D000278 ORTHO05D004371 8.4e-10 67.4 40 77.5
Potri.017G113601 Populus trichocarpa HOM05D000278 ORTHO05D004371 8.4e-10 67.4 105 43.8
arahy.Tifrunner.gnm1.ann1.WZBQ5A Arachis hypogaea HOM05D000278 ORTHO05D004371 1.1e-09 67.0 39 84.6
Lalb_Chr06g0174641 Lupinus albus HOM05D000278 ORTHO05D004371 1.1e-09 67.0 39 82.1
vmacro05568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004371 1.1e-09 67.0 39 82.1
Aa31LG11G13540 Aethionema arabicum HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 82.1
Aa31LG2G17130 Aethionema arabicum HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 82.1
Aa31LG5G13030 Aethionema arabicum HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 82.1
FvH4_1g11210 Fragaria vesca HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
FAN19G3186 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
FAN23G2332 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
FAN28G0885 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
Glyma.08G364000 Glycine max HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
Lsat_1_v5_gn_4_153000 Lactuca sativa HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 82.1
MD09G1086000 Malus domestica HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
Prupe.3G238800 Prunus persica HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
RcHm_v2.0_Chr6g0270681 Rosa chinensis HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 79.5
unitig_747.g21816 Utricularia gibba HOM05D000278 ORTHO05D004371 1.4e-09 66.6 39 82.1
AL3G11890 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 82.1
AT3G02530 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 82.1
Carub.0003s0164 Capsella rubella HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 82.1
Cc07_g08910 Coffea canephora HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
MELO3C033839.2 Cucumis melo HOM05D008781 ORTHO05D025214 1.9e-09 66.2 79 50.6
Nitab4.5_0001569g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Nitab4.5_0002288g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Nitab4.5_0005737g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Nitab4.5_0005961g0020 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Peaxi162Scf00501g00127 Petunia axillaris HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Hund20953 Selenicereus undatus HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 82.1
Solyc02g085790.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
Sopen02g030480 Solanum pennellii HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
SGA_v2.0_scaffold250G44997 Striga asiatica HOM05D000278 ORTHO05D004371 1.9e-09 66.2 39 79.5
BcaC05g30519 Brassica carinata HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
A05p44430 Brassica napus HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
C09p75800 Brassica napus HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
Dinv33932 Davidia involucrata HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 79.5
ECA232G3983 Erigeron canadensis HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
ECA246G0784 Erigeron canadensis HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 79.5
HanXRQChr14g0438721 Helianthus annuus HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
Lj4A194T33 Lonicera japonica HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 82.1
MBI10_g05705_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004371 2.4e-09 65.9 39 79.5
AL6G26950 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 82.1
AT5G16070 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 82.1
BcaB02g09203 Brassica carinata HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 82.1
CiPaw.04G040700 Carya illinoinensis HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 79.5
Glyma.18G298100 Glycine max HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 76.9
Oeu052986.1 Olea europaea HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 79.5
Oeu052987.1 Olea europaea HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 79.5
Rhsim01G0205900 Rhododendron simsii HOM05D000278 ORTHO05D004371 3.2e-09 65.5 40 75.0
Rhsim10G0063000 Rhododendron simsii HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 79.5
PGSC0003DMG400012675 Solanum tuberosum HOM05D000278 ORTHO05D004371 3.2e-09 65.5 39 79.5
Aqoxy3G03935 Aquilegia oxysepala HOM05D000278 ORTHO05D004371 4.2e-09 65.1 39 79.5
CARHR197240 Cardamine hirsuta HOM05D000278 ORTHO05D004371 4.2e-09 65.1 39 79.5
Ca_04079_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004371 4.2e-09 65.1 39 79.5
Oeu030779.1 Olea europaea HOM05D000278 ORTHO05D004371 4.2e-09 65.1 39 76.9
Thecc.04G136300 Theobroma cacao HOM05D000278 ORTHO05D004371 4.2e-09 65.1 39 82.1
MSTRG.5379 Avicennia marina HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
BcaB01g05006 Brassica carinata HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
A03p07550 Brassica napus HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
C03p08780 Brassica napus HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
BolC3t13374H Brassica oleracea HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
BraA03t10083Z Brassica rapa HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
CANSAT64G2251 Cannabis sativa HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
CAN.G625.1 Capsicum annuum HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 76.9
Thhalv10013205m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
HanXRQChr11g0324991 Helianthus annuus HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 82.1
PGR004G1971 Punica granatum HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
Solyc02g063090.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 76.9
Sopen02g014170 Solanum pennellii HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 76.9
PGSC0003DMG400024180 Solanum tuberosum HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 76.9
TPR.G15574 Trifolium pratense HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
TPR.G9697 Trifolium pratense HOM05D000278 ORTHO05D004371 5.5e-09 64.7 39 79.5
SalBow5G3863 Salvia bowleyana HOM05D000278 ORTHO05D004371 7.1e-09 64.3 39 76.9
SalBow7G4677 Salvia bowleyana HOM05D000278 ORTHO05D004371 7.1e-09 64.3 39 76.9
SGA_v2.0_scaffold13G06449 Striga asiatica HOM05D000278 ORTHO05D004371 7.1e-09 64.3 39 76.9
BcaB01g05007 Brassica carinata HOM05D000278 ORTHO05D004371 9.3e-09 63.9 39 79.5
CSS0001008 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 9.3e-09 63.9 39 76.9
CSS0025301 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 9.3e-09 63.9 39 76.9
Rhsim10G0066200 Rhododendron simsii HOM05D000278 ORTHO05D004371 9.3e-09 63.9 39 76.9
Medtr7g406870 Medicago truncatula HOM05D000278 ORTHO05D004371 1.2e-08 63.5 39 76.9
BcaC04g18911 Brassica carinata HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
A10p22990 Brassica napus HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
C09p60960 Brassica napus HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
BolC9t58943H Brassica oleracea HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
BraA10t44368Z Brassica rapa HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
CSS0032545 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
Psat3g206440 Pisum sativum HOM05D000278 ORTHO05D004371 2.1e-08 62.8 39 76.9
BcaB08g36884 Brassica carinata HOM05D000278 ORTHO05D004371 2.7e-08 62.4 39 76.9
CDE05G1773 Ceratophyllum demersum HOM05D000278 ORTHO05D004371 2.7e-08 62.4 39 74.4
Lj1g0008026 Lotus japonicus HOM05D000278 ORTHO05D004371 3.5e-08 62.0 39 74.4
Migut.L00307 Erythranthe guttata HOM05D000278 ORTHO05D004371 6.0e-08 61.2 39 71.8
Sp6g28060 Schrenkiella parvula HOM05D000278 ORTHO05D004371 1.0e-07 60.5 39 74.4
Hma1.2p1_0550F.1_g177310 Hydrangea macrophylla HOM05D000278 ORTHO05D004371 3.0e-07 58.9 34 82.4
CSS0036114 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 5.1e-07 58.2 40 65.0
SEGI_11536 Sequoiadendron giganteum HOM05D000278 ORTHO05D004371 6.7e-07 57.8 39 66.7
Pp3c11_26000 Physcomitrium patens HOM05D000278 ORTHO05D004371 1.1e-06 57.0 39 66.7
SMO301G0002 Selaginella moellendorffii HOM05D000278 ORTHO05D004371 1.1e-06 57.0 39 69.2
Mapoly0013s0040 Marchantia polymorpha HOM05D000278 ORTHO05D004371 4.3e-06 55.1 39 66.7
Cre09.g397200 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004371 5.6e-06 54.7 39 69.2


User provided reference genes

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