Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032011.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.3e-243 845.9 417 100.0
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.0e-43 179.1 106 85.8
MELO3C031186.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.0e-38 163.3 105 80.0
MELO3C031279.2 Cucumis melo HOM05D011747 ORTHO05D014199 7.0e-27 125.9 68 82.4
MELO3C008127.2 Cucumis melo HOM05D004866 ORTHO05D005716 7.8e-26 122.5 69 84.1
CsaV3_2G033540 Cucumis sativus L. HOM05D004866 ORTHO05D005716 1.7e-25 121.3 67 86.6
MELO3C029990.2 Cucumis melo HOM05D011747 ORTHO05D014199 3.9e-25 120.2 68 77.9
MELO3C034834.2 Cucumis melo HOM05D011747 ORTHO05D014199 5.0e-25 119.8 68 80.9
ClCG11G008070 Citrullus lanatus HOM05D004866 ORTHO05D005716 6.6e-25 119.4 67 83.6
Sed0013291 Sechium edule HOM05D004866 ORTHO05D005716 1.1e-24 118.6 67 83.6
MELO3C031447.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.5e-24 118.2 66 81.8
MELO3C030206.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.9e-24 117.9 77 72.7
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 8.1e-23 112.5 108 58.3
Thecc.08G185100 Theobroma cacao HOM05D004866 ORTHO05D005716 4.0e-22 110.2 68 73.5
COL.COLO4_23639 Corchorus olitorius HOM05D004866 ORTHO05D005716 5.8e-21 106.3 68 72.1
Duzib211G0074 Durio zibethinus HOM05D004866 ORTHO05D005716 1.3e-20 105.1 66 74.2
Thecc.08G184800 Theobroma cacao HOM05D004866 ORTHO05D005716 2.2e-20 104.4 67 70.1
MELO3C026657.2 Cucumis melo HOM05D011747 ORTHO05D014199 2.9e-20 104.0 68 72.1
CANSAT25G2412 Cannabis sativa HOM05D004866 ORTHO05D005716 4.9e-20 103.2 66 72.7
MD15G1411400 Malus domestica HOM05D004866 ORTHO05D005716 4.9e-20 103.2 67 71.6
MD08G1220700 Malus domestica HOM05D004866 ORTHO05D005716 6.4e-20 102.8 67 70.1
MD09G1249700 Malus domestica HOM05D004866 ORTHO05D005716 6.4e-20 102.8 67 70.1
Cfa013842 Carpinus fangiana HOM05D004866 ORTHO05D005716 1.1e-19 102.1 67 70.1
Haze_22514 Corylus avellana HOM05D004866 ORTHO05D005716 1.1e-19 102.1 67 68.7
Duzib211G0502 Durio zibethinus HOM05D004866 ORTHO05D005716 1.1e-19 102.1 67 67.2
CiPaw.08G058600 Carya illinoinensis HOM05D004866 ORTHO05D005716 2.4e-19 100.9 66 68.2
Gohir.D09G113100 Gossypium hirsutum HOM05D004866 ORTHO05D005716 2.4e-19 100.9 72 66.7
Nitab4.5_0006657g0010 Nicotiana tabacum HOM05D004866 ORTHO05D005716 2.4e-19 100.9 66 71.2
Prupe.1G557400 Prunus persica HOM05D004866 ORTHO05D005716 2.4e-19 100.9 67 68.7
COL.COLO4_38510 Corchorus olitorius HOM05D004866 ORTHO05D005716 3.2e-19 100.5 67 64.2
Gohir.A09G116000 Gossypium hirsutum HOM05D004866 ORTHO05D005716 3.2e-19 100.5 66 69.7
Gorai.006G130600 Gossypium raimondii HOM05D004866 ORTHO05D005716 3.2e-19 100.5 66 69.7
Nitab4.5_0000303g0220 Nicotiana tabacum HOM05D004866 ORTHO05D005716 3.2e-19 100.5 66 69.7
TWI34G1187 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 4.1e-19 100.1 66 68.2
Peaxi162Scf00268g01017 Petunia axillaris HOM05D004866 ORTHO05D005716 5.4e-19 99.8 66 69.7
EL10Ac1g00092 Beta vulgaris HOM05D004866 ORTHO05D005716 7.1e-19 99.4 66 66.7
Dinv15070 Davidia involucrata HOM05D004866 ORTHO05D005716 7.1e-19 99.4 66 66.7
Dinv41717 Davidia involucrata HOM05D004866 ORTHO05D005716 7.1e-19 99.4 66 69.7
ATR0752G218 Amborella trichopoda HOM05D004866 ORTHO05D005716 1.2e-18 98.6 70 67.1
Solyc11g019920.2 Solanum lycopersicum HOM05D004866 ORTHO05D005716 1.2e-18 98.6 66 69.7
Sopen11g010040 Solanum pennellii HOM05D004866 ORTHO05D005716 1.2e-18 98.6 66 69.7
PGSC0003DMG400027609 Solanum tuberosum HOM05D004866 ORTHO05D005716 1.2e-18 98.6 66 69.7
Sc01g0001820 Simmondsia chinensis HOM05D004866 ORTHO05D005716 1.6e-18 98.2 66 66.7
TWI60G1141 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 1.6e-18 98.2 66 66.7
Actinidia02574 Actinidia chinensis HOM05D004866 ORTHO05D005716 2.1e-18 97.8 66 66.7
Aqoxy5G02452 Aquilegia oxysepala HOM05D004866 ORTHO05D005716 2.7e-18 97.4 66 68.2
CiPaw.07G160700 Carya illinoinensis HOM05D004866 ORTHO05D005716 2.7e-18 97.4 67 67.2
Sabra19G0093900 Salix brachista HOM05D004866 ORTHO05D005716 3.5e-18 97.1 66 65.2
Ah.05g178220 Amaranthus hybridus HOM05D004866 ORTHO05D005716 4.6e-18 96.7 66 63.6
Cpa.g.sc66.30 Carica papaya HOM05D004866 ORTHO05D005716 4.6e-18 96.7 66 66.7
CDE07G0979 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 4.6e-18 96.7 76 59.2
GSVIVG01034781001 Vitis vinifera HOM05D004866 ORTHO05D005716 4.6e-18 96.7 66 68.2
Ciclev10001144m.g Citrus clementina HOM05D004866 ORTHO05D005716 6.0e-18 96.3 67 61.2
Lj7C291G3 Lonicera japonica HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 65.2
MBI09_g41429_MAGBIO Magnolia biondii HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 65.2
Oeu021211.1 Olea europaea HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 63.6
Potri.013G111400 Populus trichocarpa HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 66.7
Solyc06g065320.4 Solanum lycopersicum HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 68.2
PGSC0003DMG400026074 Solanum tuberosum HOM05D004866 ORTHO05D005716 6.0e-18 96.3 66 68.2
THA.LOC104816334 Tarenaya hassleriana HOM05D004866 ORTHO05D005716 6.0e-18 96.3 67 62.7
ECA247G2093 Erigeron canadensis HOM05D004866 ORTHO05D005716 7.8e-18 95.9 66 68.2
Manes.02G192700 Manihot esculenta HOM05D004866 ORTHO05D005716 7.8e-18 95.9 66 66.7
Nitab4.5_0000167g0040 Nicotiana tabacum HOM05D004866 ORTHO05D005716 7.8e-18 95.9 66 66.7
QL02p033402 Quercus lobata HOM05D004866 ORTHO05D005716 7.8e-18 95.9 66 66.7
AT1G35620 Arabidopsis thaliana HOM05D004866 ORTHO05D005716 1.0e-17 95.5 67 62.7
MSTRG.22459 Avicennia marina HOM05D004866 ORTHO05D005716 1.0e-17 95.5 68 63.2
Carub.0001s3321 Capsella rubella HOM05D004866 ORTHO05D005716 1.0e-17 95.5 67 62.7
Nitab4.5_0001579g0120 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.3e-17 95.1 66 65.2
Sopen06g023810 Solanum pennellii HOM05D004866 ORTHO05D005716 1.3e-17 95.1 66 66.7
Eucgr.C02238 Eucalyptus grandis HOM05D004866 ORTHO05D005716 1.7e-17 94.7 66 62.1
TAR628G0891 Trochodendron aralioides HOM05D004866 ORTHO05D005716 2.3e-17 94.4 66 65.2
DCAR_001057 Daucus carota HOM05D004866 ORTHO05D005716 3.0e-17 94.0 66 66.7
Potri.019G082400 Populus trichocarpa HOM05D004866 ORTHO05D005716 3.0e-17 94.0 66 63.6
PGR042G1785 Punica granatum HOM05D004866 ORTHO05D005716 3.0e-17 94.0 66 63.6
AUR62004637 Chenopodium quinoa HOM05D004866 ORTHO05D005716 3.9e-17 93.6 66 62.1
AUR62022699 Chenopodium quinoa HOM05D004866 ORTHO05D005716 3.9e-17 93.6 66 62.1
Cc01_g05780 Coffea canephora HOM05D004866 ORTHO05D005716 3.9e-17 93.6 69 62.3
Aa31LG6G8820 Aethionema arabicum HOM05D004866 ORTHO05D005716 5.1e-17 93.2 67 61.2
Peaxi162Scf01013g00127 Petunia axillaris HOM05D004866 ORTHO05D005716 5.1e-17 93.2 66 63.6
Sp1g30340 Schrenkiella parvula HOM05D004866 ORTHO05D005716 5.1e-17 93.2 67 61.2
Lsat_1_v5_gn_1_12401 Lactuca sativa HOM05D004866 ORTHO05D005716 6.6e-17 92.8 66 65.2
TAR624G1235 Trochodendron aralioides HOM05D004866 ORTHO05D005716 6.6e-17 92.8 66 65.2
MSTRG.1528 Avicennia marina HOM05D004866 ORTHO05D005716 8.6e-17 92.4 66 62.1
Nn1g08376 Nelumbo nucifera HOM05D004866 ORTHO05D005716 8.6e-17 92.4 66 63.6
SGA_v2.0_scaffold118G32495 Striga asiatica HOM05D004866 ORTHO05D005716 8.6e-17 92.4 66 63.6
CSS0004253 Camellia sinensis var. sinensis HOM05D004866 ORTHO05D005716 1.1e-16 92.0 66 65.2
BcaB03g13658 Brassica carinata HOM05D004866 ORTHO05D005716 1.5e-16 91.7 67 61.2
Gohir.A05G250450 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.5e-16 91.7 66 63.6
SGA_v2.0_scaffold24G10559 Striga asiatica HOM05D004866 ORTHO05D005716 1.5e-16 91.7 67 64.2
A05p23590 Brassica napus HOM05D004866 ORTHO05D005716 1.9e-16 91.3 67 59.7
BolC5t32456H Brassica oleracea HOM05D004866 ORTHO05D005716 1.9e-16 91.3 67 59.7
BraA05t21227Z Brassica rapa HOM05D004866 ORTHO05D005716 1.9e-16 91.3 67 59.7
FvH4_5g30970 Fragaria vesca HOM05D004866 ORTHO05D005716 1.9e-16 91.3 66 62.1
FAN18G3952 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.9e-16 91.3 66 62.1
unitig_0.g2131 Utricularia gibba HOM05D004866 ORTHO05D005716 1.9e-16 91.3 66 62.1
vmacro12483 Vaccinium macrocarpon HOM05D004866 ORTHO05D005716 1.9e-16 91.3 66 65.2
BcaC05g27723 Brassica carinata HOM05D004866 ORTHO05D005716 2.5e-16 90.9 67 59.7
C05p37040 Brassica napus HOM05D004866 ORTHO05D005716 2.5e-16 90.9 67 59.7
CDE04G2694 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 2.5e-16 90.9 66 59.1
Gohir.D05G276400 Gossypium hirsutum HOM05D004866 ORTHO05D005716 2.5e-16 90.9 67 61.2
Gorai.009G289400 Gossypium raimondii HOM05D004866 ORTHO05D005716 2.5e-16 90.9 67 61.2
PSO017G5284 Papaver somniferum HOM05D004866 ORTHO05D005716 2.5e-16 90.9 66 62.1
Gohir.A05G274200 Gossypium hirsutum HOM05D004866 ORTHO05D005716 3.3e-16 90.5 67 59.7
Hma1.2p1_0251F.1_g102520 Hydrangea macrophylla HOM05D004866 ORTHO05D005716 3.3e-16 90.5 66 60.6
Lj5g0015319 Lotus japonicus HOM05D004866 ORTHO05D005716 3.3e-16 90.5 67 62.7
CARHR034420 Cardamine hirsuta HOM05D004866 ORTHO05D005716 4.3e-16 90.1 67 58.2
Thhalv10010385m.g Eutrema salsugineum HOM05D004866 ORTHO05D005716 4.3e-16 90.1 67 58.2
FAN04G1244 Fragaria x ananassa HOM05D004866 ORTHO05D005716 4.3e-16 90.1 66 60.6
FAN13G0537 Fragaria x ananassa HOM05D004866 ORTHO05D005716 4.3e-16 90.1 66 60.6
HanXRQChr02g0044281 Helianthus annuus HOM05D004866 ORTHO05D005716 4.3e-16 90.1 66 62.1
CAN.G2.14 Capsicum annuum HOM05D004866 ORTHO05D005716 5.6e-16 89.7 66 63.6
Rhsim11G0058000 Rhododendron simsii HOM05D004866 ORTHO05D005716 5.6e-16 89.7 66 63.6
Rhsim11G0058200 Rhododendron simsii HOM05D004866 ORTHO05D005716 5.6e-16 89.7 66 63.6
FAN04G1967 Fragaria x ananassa HOM05D004866 ORTHO05D005716 7.3e-16 89.4 66 60.6
FAN08G2315 Fragaria x ananassa HOM05D004866 ORTHO05D005716 7.3e-16 89.4 66 59.1
RcHm_v2.0_Chr7g0226361 Rosa chinensis HOM05D004866 ORTHO05D005716 7.3e-16 89.4 66 62.1
Atru.chr13.1733 Acer truncatum HOM05D004866 ORTHO05D005716 1.2e-15 88.6 67 59.7
Migut.N03354 Erythranthe guttata HOM05D004866 ORTHO05D005716 1.2e-15 88.6 67 62.7
Glyma.10G217600 Glycine max HOM05D004866 ORTHO05D005716 1.2e-15 88.6 66 63.6
Lalb_Chr06g0161961 Lupinus albus HOM05D004866 ORTHO05D005716 1.2e-15 88.6 67 59.7
Rhsim06G0094700 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.2e-15 88.6 67 62.7
SalBow7G0145 Salvia bowleyana HOM05D004866 ORTHO05D005716 1.2e-15 88.6 66 59.1
VMungo0720G1828 Vigna mungo HOM05D004866 ORTHO05D005716 1.2e-15 88.6 66 60.6
SalBow6G2673 Salvia bowleyana HOM05D004866 ORTHO05D005716 1.6e-15 88.2 66 62.1
Gohir.D05G253300 Gossypium hirsutum HOM05D004866 ORTHO05D005716 2.1e-15 87.8 66 60.6
Lalb_Chr02g0141731 Lupinus albus HOM05D004866 ORTHO05D005716 2.1e-15 87.8 66 60.6
HanXRQChr04g0109621 Helianthus annuus HOM05D004866 ORTHO05D005716 2.8e-15 87.4 66 62.1
arahy.Tifrunner.gnm1.ann1.YL670A Arachis hypogaea HOM05D004866 ORTHO05D005716 3.6e-15 87.0 71 56.3
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 3.6e-15 87.0 66 57.6
Medtr1g096790 Medicago truncatula HOM05D004866 ORTHO05D005716 3.6e-15 87.0 65 61.5
arahy.Tifrunner.gnm1.ann1.AKH03T Arachis hypogaea HOM05D004866 ORTHO05D005716 4.7e-15 86.7 71 56.3
MELO3C033230.2 Cucumis melo HOM05D000516 ORTHO05D000409 4.7e-15 86.7 63 65.1
Gorai.009G263700 Gossypium raimondii HOM05D004866 ORTHO05D005716 4.7e-15 86.7 66 59.1
HPP92_019370 Vanilla planifolia HOM05D004866 ORTHO05D005716 4.7e-15 86.7 66 57.6
TPR.G15688 Trifolium pratense HOM05D004866 ORTHO05D005716 6.2e-15 86.3 66 57.6
RcHm_v2.0_Chr7g0226321 Rosa chinensis HOM05D004866 ORTHO05D005716 8.1e-15 85.9 66 57.6
CAN.G199.2 Capsicum annuum HOM05D004866 ORTHO05D005716 1.4e-14 85.1 59 67.8
Phvul.007G088500 Phaseolus vulgaris HOM05D004866 ORTHO05D005716 1.4e-14 85.1 66 57.6
Aa31LG9G14850 Aethionema arabicum HOM05D004866 ORTHO05D005716 2.4e-14 84.3 72 52.8
SalBow1G5438 Salvia bowleyana HOM05D004866 ORTHO05D005716 3.1e-14 84.0 66 59.1
SHI09019 Sapria himalayana HOM05D004866 ORTHO05D005716 3.1e-14 84.0 66 59.1
Hund16793 Selenicereus undatus HOM05D004866 ORTHO05D005716 8.9e-14 82.4 66 53.0
Migut.C01261 Erythranthe guttata HOM05D004866 ORTHO05D005716 2.0e-13 81.3 66 56.1
Os04g0432500 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 2.6e-13 80.9 66 57.6
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.4e-13 80.5 47 87.2
MELO3C035437.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.4e-13 80.5 47 87.2
Zm00001eb422640 Zea mays HOM05D004866 ORTHO05D005716 7.6e-13 79.3 66 56.1
Lalb_Chr03g0036111 Lupinus albus HOM05D004866 ORTHO05D005716 1.3e-12 78.6 65 52.3
Zm00001eb082680 Zea mays HOM05D004866 ORTHO05D005716 1.3e-12 78.6 66 56.1
Zm00001eb243460 Zea mays HOM05D004866 ORTHO05D005716 1.4e-11 75.1 66 56.1
MELO3C029159.2 Cucumis melo HOM05D011747 ORTHO05D014199 3.2e-11 73.9 46 73.9
MELO3C029725.2 Cucumis melo HOM05D011747 ORTHO05D014199 7.1e-11 72.8 58 60.3
Os02g0550300 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 1.6e-10 71.6 66 53.0
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 4.6e-10 70.1 82 40.2
ClCG08G004820 Citrullus lanatus HOM05D007314 ORTHO05D003768 1.3e-09 68.6 79 46.8
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.3e-09 68.6 92 42.4
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 1.3e-09 68.6 83 41.0
MELO3C019328.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.7e-09 68.2 92 43.5
MELO3C034299.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.0e-09 67.4 92 42.4
CDE02G1426 Ceratophyllum demersum HOM05D000012 ORTHO05D000540 3.9e-09 67.0 53 56.6
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.6e-09 66.2 92 41.3
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.6e-09 66.2 82 41.5
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 8.7e-09 65.9 92 40.2
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.1e-08 65.5 144 38.2
SMO347G0292 Selaginella moellendorffii HOM05D004866 ORTHO05D005716 1.1e-08 65.5 64 42.2
MELO3C032670.2 Cucumis melo HOM05D011747 ORTHO05D007013 2.1e-07 61.2 32 87.5
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.2e-07 59.7 79 44.3
Sed0001060 Sechium edule HOM05D007314 ORTHO05D003768 1.4e-06 58.5 87 36.8
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-06 58.2 80 33.8
Sed0010248 Sechium edule HOM05D007314 ORTHO05D003768 1.8e-06 58.2 91 33.0
MELO3C034811.2 Cucumis melo HOM05D011747 ORTHO05D168236 4.0e-06 57.0 41 70.7
ClCG10G008410 Citrullus lanatus HOM05D007314 ORTHO05D003768 5.2e-06 56.6 61 44.3


User provided reference genes

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