Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 2.8e-269 931.4 486 100.0
MELO3C028848.2 Cucumis melo HOM05D009641 ORTHO05D013069 2.1e-30 137.9 84 88.1
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 3.0e-29 134.0 74 90.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 7.2e-15 86.3 49 93.9
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.7e-14 84.3 50 78.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.0e-13 82.4 50 78.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.0e-13 82.4 50 78.0
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.0e-13 82.4 50 78.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.4e-13 82.0 50 80.0
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.4e-13 82.0 48 77.1
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 5.7e-12 76.6 50 76.0
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 7.5e-12 76.3 47 72.3
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.3e-11 75.5 51 70.6
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.2e-11 74.7 57 63.2
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 2.2e-11 74.7 57 63.2
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.2e-11 74.7 49 71.4
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.8e-11 74.3 47 74.5
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 2.8e-11 74.3 53 69.8
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 6.3e-11 73.2 49 71.4
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 6.3e-11 73.2 50 70.0
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 8.2e-11 72.8 50 70.0
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.1e-10 72.4 47 70.2
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.1e-10 72.4 47 72.3
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.4e-10 72.0 50 68.0
MELO3C034241.2 Cucumis melo HOM05D023844 ORTHO05D013069 1.4e-10 72.0 86 50.0
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.4e-10 72.0 46 71.7
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 9.1e-10 69.3 47 70.2
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.2e-09 68.9 50 64.0
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.2e-09 68.9 50 68.0
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 1.2e-09 68.9 50 66.0
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.0e-09 68.2 50 68.0
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.0e-09 68.2 50 66.0
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.0e-09 68.2 49 69.4
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 2.7e-09 67.8 58 56.9
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.5e-09 67.4 50 66.0
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 5.9e-09 66.6 50 66.0
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 7.7e-09 66.2 47 66.0
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 7.7e-09 66.2 48 66.7
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 7.7e-09 66.2 49 77.6
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 7.7e-09 66.2 49 67.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.3e-08 65.5 56 58.9
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.3e-08 65.5 50 64.0
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.3e-08 65.5 50 66.0
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-08 65.5 52 69.2
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.7e-08 65.1 50 64.0
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.7e-08 65.1 50 64.0
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.7e-08 65.1 50 64.0
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.2e-08 64.7 50 64.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 2.2e-08 64.7 50 64.0
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 2.2e-08 64.7 50 64.0
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.9e-08 64.3 50 58.0
MELO3C022608.2 Cucumis melo HOM05D000004 ORTHO05D000002 3.8e-08 63.9 86 47.7
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 3.8e-08 63.9 53 60.4
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 3.8e-08 63.9 53 58.5
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 5.0e-08 63.5 55 58.2
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 5.0e-08 63.5 41 73.2
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.5e-08 63.2 53 60.4
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 62.0
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 8.5e-08 62.8 55 58.2
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 8.5e-08 62.8 50 64.0
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.5e-07 62.0 49 63.3
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.5e-07 62.0 48 62.5
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.5e-07 62.0 52 73.1
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 1.9e-07 61.6 37 75.7
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.5e-07 61.2 49 63.3
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.2e-07 60.8 38 71.1
MELO3C022579.2 Cucumis melo HOM05D009641 ORTHO05D013069 3.2e-07 60.8 72 41.7
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 3.2e-07 60.8 50 62.0
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.2e-07 60.8 49 63.3
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 4.2e-07 60.5 50 60.0
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 5.5e-07 60.1 53 60.4
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 5.5e-07 60.1 52 65.4
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 7.2e-07 59.7 49 63.3
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 7.2e-07 59.7 50 62.0
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 9.4e-07 59.3 49 69.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-06 58.9 46 65.2
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-06 58.9 46 65.2
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.2e-06 58.9 48 58.3
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 1.6e-06 58.5 39 71.8
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.1e-06 58.2 37 64.9
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.7e-06 57.8 52 67.3
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.7e-06 57.8 52 67.3
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.7e-06 57.8 37 64.9
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.7e-06 57.8 49 61.2
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.6e-06 57.4 37 70.3
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 3.6e-06 57.4 37 70.3
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.6e-06 57.4 49 69.4
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.6e-06 57.4 49 69.4
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 4.7e-06 57.0 103 40.8
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 4.7e-06 57.0 38 68.4
MELO3C013142.2 Cucumis melo HOM05D009641 ORTHO05D013069 8.0e-06 56.2 79 46.8
MELO3C024979.2 Cucumis melo HOM05D009641 ORTHO05D013069 8.0e-06 56.2 88 40.9
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 8.0e-06 56.2 49 65.3
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 8.0e-06 56.2 49 69.4
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 8.0e-06 56.2 47 57.4


User provided reference genes

Program Settings