Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031985.2 Cucumis melo HOM05D003679 ORTHO05D004265 1.2e-47 193.0 103 100.0
MELO3C022240.2 Cucumis melo HOM05D000113 ORTHO05D001798 1.0e-19 100.1 69 78.3
MELO3C033932.2 Cucumis melo HOM05D003679 ORTHO05D004265 2.5e-18 95.5 121 52.1
MELO3C034468.2 Cucumis melo HOM05D003679 ORTHO05D004265 9.6e-18 93.6 52 92.3
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 4.0e-16 88.2 76 67.1
MELO3C035378.2 Cucumis melo HOM05D003679 ORTHO05D166101 2.4e-13 79.0 83 61.4
MELO3C031435.2 Cucumis melo HOM05D003679 ORTHO05D004265 3.2e-13 78.6 83 57.8
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 1.3e-09 66.6 46 82.6
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 2.1e-09 65.9 46 80.4
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 2.1e-09 65.9 46 80.4
MELO3C033347.2 Cucumis melo HOM05D026970 ORTHO05D167476 1.1e-08 63.5 101 45.5
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 1.4e-08 63.2 46 73.9
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 71.7
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.8e-08 62.8 46 69.6
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 2.4e-08 62.4 46 67.4
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 2.4e-08 62.4 46 71.7
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 69.6
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 71.7
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 71.7
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 69.6
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 69.6
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 3.1e-08 62.0 46 69.6
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 4.0e-08 61.6 46 73.9
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 4.0e-08 61.6 46 73.9
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 4.0e-08 61.6 46 73.9
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 4.0e-08 61.6 46 71.7
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 4.0e-08 61.6 46 67.4
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 5.3e-08 61.2 46 69.6
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 5.3e-08 61.2 46 67.4
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 5.3e-08 61.2 46 67.4
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 5.3e-08 61.2 46 65.2
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 5.3e-08 61.2 46 71.7
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 9.0e-08 60.5 46 73.9
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 1.2e-07 60.1 46 69.6
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 1.2e-07 60.1 46 69.6
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 1.2e-07 60.1 45 66.7
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 1.2e-07 60.1 46 71.7
MELO3C029649.2 Cucumis melo HOM05D037858 ORTHO05D166997 1.2e-07 60.1 135 38.5
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 1.2e-07 60.1 46 67.4
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 1.2e-07 60.1 45 71.1
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 1.2e-07 60.1 46 69.6
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 69.6
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 69.6
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 71.7
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 71.7
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 71.7
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 71.7
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.5e-07 59.7 46 71.7
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 1.5e-07 59.7 37 75.7
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 1.5e-07 59.7 37 75.7
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 2.0e-07 59.3 46 67.4
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 2.0e-07 59.3 46 67.4
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 2.0e-07 59.3 46 71.7
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 2.0e-07 59.3 46 69.6
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 2.6e-07 58.9 46 67.4
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 2.6e-07 58.9 46 67.4
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 2.6e-07 58.9 46 67.4
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 2.6e-07 58.9 46 69.6
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 2.6e-07 58.9 46 67.4
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 2.6e-07 58.9 35 80.0
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 3.4e-07 58.5 46 67.4
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 3.4e-07 58.5 46 69.6
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 3.4e-07 58.5 37 75.7
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 3.4e-07 58.5 46 69.6
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 65.2
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 4.5e-07 58.2 43 74.4
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 67.4
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 4.5e-07 58.2 46 69.6
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 5.8e-07 57.8 46 67.4
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 5.8e-07 57.8 45 68.9
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 5.8e-07 57.8 46 67.4
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 5.8e-07 57.8 50 70.0
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 5.8e-07 57.8 46 67.4
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 5.8e-07 57.8 46 67.4
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 67.4
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 69.6
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 65.2
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 65.2
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 67.4
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 67.4
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 67.4
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 65.2
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 65.2
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 65.2
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 7.6e-07 57.4 46 67.4
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 9.9e-07 57.0 46 67.4
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 9.9e-07 57.0 35 77.1
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 9.9e-07 57.0 35 77.1
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 9.9e-07 57.0 35 77.1
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 9.9e-07 57.0 35 77.1
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 9.9e-07 57.0 46 67.4
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 1.3e-06 56.6 46 65.2
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 1.3e-06 56.6 46 65.2
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 1.3e-06 56.6 46 69.6
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 1.3e-06 56.6 35 77.1
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 1.3e-06 56.6 37 70.3
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 1.7e-06 56.2 46 65.2
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 1.7e-06 56.2 35 74.3
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 1.7e-06 56.2 46 65.2
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.7e-06 56.2 46 65.2
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.7e-06 56.2 46 65.2
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 1.7e-06 56.2 46 65.2
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 1.7e-06 56.2 37 73.0
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 1.7e-06 56.2 37 73.0
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 2.2e-06 55.8 35 71.4
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 2.2e-06 55.8 35 74.3
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 2.2e-06 55.8 46 67.4
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 2.9e-06 55.5 46 67.4
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 2.9e-06 55.5 46 65.2
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 2.9e-06 55.5 35 71.4
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 2.9e-06 55.5 46 65.2
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 2.9e-06 55.5 35 74.3
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 2.9e-06 55.5 46 65.2
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 3.8e-06 55.1 37 70.3
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 3.8e-06 55.1 37 70.3
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 3.8e-06 55.1 35 71.4
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.8e-06 55.1 46 67.4
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.8e-06 55.1 46 67.4
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 3.8e-06 55.1 71 50.7
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 4.9e-06 54.7 46 65.2
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 4.9e-06 54.7 37 70.3
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 4.9e-06 54.7 46 65.2
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 6.4e-06 54.3 35 74.3
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 6.4e-06 54.3 49 67.3
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 6.4e-06 54.3 43 67.4
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 6.4e-06 54.3 37 67.6
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 8.4e-06 53.9 35 74.3
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 8.4e-06 53.9 44 63.6


User provided reference genes

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