Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 2.4e-56 221.9 106 100.0
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 3.4e-50 201.4 101 93.1
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 5.7e-50 200.7 101 94.1
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 4.8e-49 197.6 101 92.1
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.1e-44 182.2 101 84.2
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.8e-44 181.8 101 85.1
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 4.7e-44 181.0 101 84.2
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.7e-44 181.0 101 84.2
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 8.0e-44 180.3 101 82.2
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.4e-43 179.5 101 83.2
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 1.4e-43 179.5 101 83.2
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 1.4e-43 179.5 101 83.2
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 2.3e-43 178.7 101 84.2
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.3e-43 178.7 101 81.2
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 2.3e-43 178.7 101 82.2
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 3.0e-43 178.3 101 83.2
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 3.0e-43 178.3 101 81.2
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 3.0e-43 178.3 100 82.0
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 5.2e-43 177.6 101 82.2
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 6.8e-43 177.2 101 81.2
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 6.8e-43 177.2 101 83.2
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 1.2e-42 176.4 101 82.2
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 1.5e-42 176.0 101 80.2
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 2.0e-42 175.6 101 78.2
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 2.0e-42 175.6 101 81.2
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 2.6e-42 175.3 101 79.2
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 2.6e-42 175.3 99 81.8
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 2.6e-42 175.3 101 82.2
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 3.4e-42 174.9 101 82.2
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 3.4e-42 174.9 101 80.2
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 4.4e-42 174.5 101 80.2
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 4.4e-42 174.5 101 80.2
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 4.4e-42 174.5 99 80.8
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 5.7e-42 174.1 101 80.2
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 5.7e-42 174.1 101 79.2
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 5.7e-42 174.1 101 77.2
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 5.7e-42 174.1 95 84.2
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 9.8e-42 173.3 101 78.2
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 9.8e-42 173.3 101 78.2
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 1.3e-41 172.9 101 79.2
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 1.7e-41 172.6 101 79.2
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 1.7e-41 172.6 94 84.0
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.7e-41 172.6 101 81.2
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 1.7e-41 172.6 101 80.2
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.7e-41 172.6 101 78.2
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 1.7e-41 172.6 101 81.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.2e-41 172.2 97 81.4
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 2.2e-41 172.2 101 80.2
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 2.2e-41 172.2 101 80.2
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.2e-41 172.2 100 81.0
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 2.2e-41 172.2 101 79.2
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 2.8e-41 171.8 101 79.2
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 3.7e-41 171.4 99 79.8
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 6.3e-41 170.6 95 82.1
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 6.3e-41 170.6 101 78.2
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.3e-41 170.6 101 79.2
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 8.3e-41 170.2 92 85.9
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 8.3e-41 170.2 99 79.8
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 1.4e-40 169.5 101 78.2
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 1.4e-40 169.5 101 78.2
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-40 169.5 101 79.2
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.8e-40 169.1 99 77.8
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 2.4e-40 168.7 99 79.8
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.4e-40 168.7 96 81.2
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.4e-40 168.7 96 81.2
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.4e-40 168.7 99 76.8
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 2.4e-40 168.7 101 75.2
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 3.1e-40 168.3 93 82.8
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.1e-40 168.3 101 77.2
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.1e-40 168.3 100 78.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 5.4e-40 167.5 101 75.2
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.2e-39 166.4 101 75.2
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.6e-39 166.0 101 77.2
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.7e-39 165.2 101 75.2
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 4.5e-39 164.5 99 73.7
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 7.8e-39 163.7 94 80.9
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.0e-38 163.3 99 73.7
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.7e-38 162.5 99 72.7
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 1.1e-37 159.8 96 79.2
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 7.3e-37 157.1 101 72.3
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 9.5e-37 156.8 101 73.3
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.2e-36 156.4 99 72.7
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.2e-36 156.4 99 72.7
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 1.6e-36 156.0 101 70.3
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 2.1e-36 155.6 99 71.7
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.6e-36 154.8 95 75.8
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 4.7e-36 154.5 99 69.7
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 4.7e-36 154.5 101 70.3
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 4.7e-36 154.5 99 70.7
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 6.1e-36 154.1 99 69.7
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 6.1e-36 154.1 99 70.7
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 6.1e-36 154.1 102 72.5
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 1.8e-35 152.5 99 69.7
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.0e-35 151.8 99 68.7
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.0e-35 151.8 97 72.2
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 4.0e-35 151.4 99 69.7
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 4.0e-35 151.4 99 69.7
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 4.0e-35 151.4 99 69.7
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 4.0e-35 151.4 99 69.7
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 5.2e-35 151.0 99 70.7
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 8.9e-35 150.2 99 69.7
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 8.9e-35 150.2 99 69.7
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 8.9e-35 150.2 99 69.7
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 8.9e-35 150.2 99 69.7
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 8.9e-35 150.2 99 69.7
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 1.2e-34 149.8 99 69.7
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.2e-34 149.8 99 66.7
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 1.5e-34 149.4 99 69.7
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 4.4e-34 147.9 99 68.7
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 1.1e-32 143.3 101 68.3
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 3.2e-32 141.7 93 74.2
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 2.7e-31 138.7 99 67.7
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.5e-31 138.3 79 83.5
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 4.3e-29 131.3 101 60.4
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 2.8e-28 128.6 80 76.2
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 1.4e-24 116.3 72 75.0
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 2.6e-18 95.5 59 78.0
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 7.8e-15 84.0 43 83.7
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 3.9e-14 81.6 69 62.3
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 7.6e-10 67.4 35 91.4
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.9e-06 55.1 61 50.8


User provided reference genes

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