Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.7e-70 268.5 127 100.0
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.1e-51 205.7 101 99.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 4.7e-51 204.5 101 98.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 5.8e-49 197.6 101 95.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.9e-48 195.3 101 91.1
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 6.4e-48 194.1 101 90.1
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 6.4e-48 194.1 101 90.1
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.1e-47 193.4 101 89.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.4e-47 192.2 101 89.1
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 3.2e-47 191.8 101 89.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 4.2e-47 191.4 101 89.1
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 7.1e-47 190.7 101 89.1
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 9.3e-47 190.3 101 88.1
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.2e-46 189.9 101 88.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.6e-46 189.5 101 87.1
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.7e-46 188.7 100 88.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 2.7e-46 188.7 100 88.0
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.5e-46 188.3 98 90.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.6e-46 188.0 99 88.9
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 6.0e-46 187.6 100 86.0
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 7.8e-46 187.2 96 90.6
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.0e-45 186.8 101 85.1
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.3e-45 185.7 101 85.1
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 5.1e-45 184.5 100 86.0
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 5.1e-45 184.5 99 86.9
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.1e-45 184.5 100 85.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.1e-44 183.3 96 89.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.1e-44 183.3 100 85.0
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.5e-44 183.0 95 90.5
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.9e-44 182.6 96 86.5
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.9e-44 182.6 101 84.2
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.9e-44 182.6 101 84.2
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.9e-44 182.6 101 84.2
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.3e-44 181.8 101 84.2
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.3e-44 181.4 99 84.8
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 7.3e-44 180.6 99 83.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 7.3e-44 180.6 99 83.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 7.3e-44 180.6 99 83.8
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 9.6e-44 180.3 94 89.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 9.6e-44 180.3 100 82.0
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.3e-43 179.9 101 83.2
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.3e-43 179.9 99 83.8
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.3e-43 179.9 99 83.8
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.6e-43 179.5 94 90.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.6e-43 179.5 94 90.4
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.1e-43 179.1 94 88.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 2.1e-43 179.1 101 82.2
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.1e-43 179.1 99 82.8
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 2.1e-43 179.1 94 90.4
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.8e-43 178.7 94 88.3
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 2.8e-43 178.7 94 89.4
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.8e-43 178.7 94 89.4
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 3.6e-43 178.3 99 81.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 3.6e-43 178.3 101 82.2
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 3.6e-43 178.3 98 84.7
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.6e-43 178.3 95 86.3
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.8e-43 177.9 94 89.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 4.8e-43 177.9 99 81.8
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 8.1e-43 177.2 100 84.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.1e-42 176.8 99 81.8
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.1e-42 176.8 94 87.2
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.8e-42 176.0 99 83.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.4e-42 175.6 99 80.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.4e-42 175.6 104 80.8
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.1e-42 175.3 101 79.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.1e-42 175.3 94 85.1
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.1e-42 175.3 101 78.2
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 4.0e-42 174.9 94 87.2
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.0e-42 174.9 96 83.3
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.9e-42 174.1 99 81.8
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 9.0e-42 173.7 101 78.2
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.0e-42 173.7 94 85.1
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.2e-41 173.3 101 78.2
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.2e-41 173.3 99 79.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.5e-41 172.9 99 78.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 2.0e-41 172.6 101 77.2
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.0e-41 172.6 101 77.2
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.6e-41 172.2 94 83.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.6e-41 172.2 95 85.3
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 2.6e-41 172.2 95 85.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 3.4e-41 171.8 101 76.2
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 4.5e-41 171.4 99 78.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.3e-40 169.9 100 78.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.7e-40 169.5 94 85.1
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.2e-40 169.1 94 81.9
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.9e-40 168.7 93 83.9
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.9e-40 168.7 100 77.0
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 3.8e-40 168.3 93 83.9
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 4.9e-40 167.9 101 75.2
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 4.9e-40 167.9 101 75.2
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 8.4e-40 167.2 101 75.2
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 8.4e-40 167.2 101 75.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 8.4e-40 167.2 101 75.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 8.4e-40 167.2 101 76.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.1e-39 166.8 100 75.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.9e-39 166.0 101 74.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.2e-39 165.2 101 74.3
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.2e-39 165.2 101 74.3
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-38 163.3 101 73.3
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-38 162.9 103 72.8
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.6e-38 162.9 101 73.3
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.1e-38 162.5 101 73.3
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 7.9e-38 160.6 114 70.2
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.3e-37 159.8 93 80.6
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.0e-37 158.7 101 72.3
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.3e-35 153.3 95 73.7
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.1e-35 152.5 83 86.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.5e-33 146.4 100 63.0
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.6e-33 144.1 100 67.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 6.4e-32 141.0 173 46.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.4e-31 139.0 127 55.9
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.6e-28 127.9 70 87.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.4e-25 118.6 100 56.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.9e-23 112.8 62 85.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 9.3e-23 110.5 100 57.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.2e-22 110.2 99 57.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.6e-22 109.8 59 89.8
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 4.6e-22 108.2 58 82.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.3e-21 106.7 95 50.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-18 97.1 68 63.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.8e-18 96.3 99 50.5
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.9e-15 86.3 100 48.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.0e-13 80.5 104 38.5
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.4e-13 80.1 44 84.1
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.7e-11 72.0 83 39.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.3e-11 71.2 56 64.3
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 8.2e-11 70.9 37 91.9
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.3e-08 63.5 37 81.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.1e-06 56.2 104 38.5


User provided reference genes

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