Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031865.2 Cucumis melo HOM05D003063 ORTHO05D003242 1.5e-50 202.6 108 100.0
CsaV3_4G002510 Cucumis sativus L. HOM05D003063 ORTHO05D003242 2.6e-42 175.3 113 82.3
ClCG07G011700 Citrullus lanatus HOM05D003063 ORTHO05D003242 2.2e-41 172.2 113 79.6
Sed0026282 Sechium edule HOM05D003063 ORTHO05D003242 2.2e-36 155.6 114 72.8
MELO3C017794.2 Cucumis melo HOM05D003063 ORTHO05D003242 9.1e-27 123.6 87 78.2
QL10p051682 Quercus lobata HOM05D003063 ORTHO05D003242 4.5e-26 121.3 117 54.7
Cpa.g.sc9.325 Carica papaya HOM05D003063 ORTHO05D003242 2.5e-24 115.5 117 52.1
Oeu022687.1 Olea europaea HOM05D003063 ORTHO05D003242 1.2e-23 113.2 113 53.1
Actinidia34575 Actinidia chinensis HOM05D003063 ORTHO05D003242 1.6e-23 112.8 111 54.1
Lj3g0000361 Lotus japonicus HOM05D003063 ORTHO05D003242 3.6e-23 111.7 116 50.0
Prupe.1G199700 Prunus persica HOM05D003063 ORTHO05D003242 6.1e-23 110.9 116 56.9
MSTRG.24571 Avicennia marina HOM05D003063 ORTHO05D003242 7.9e-23 110.5 113 54.0
Oeu035189.1 Olea europaea HOM05D003063 ORTHO05D003242 1.4e-22 109.8 113 49.6
Ciclev10019609m.g Citrus clementina HOM05D003063 ORTHO05D003242 2.3e-22 109.0 117 49.6
Gohir.A10G140900 Gossypium hirsutum HOM05D003063 ORTHO05D003242 3.9e-22 108.2 116 52.6
TPR.G6513 Trifolium pratense HOM05D003063 ORTHO05D003242 5.1e-22 107.8 115 54.8
Atru.chr4.1282 Acer truncatum HOM05D003063 ORTHO05D003242 6.7e-22 107.5 118 52.5
arahy.Tifrunner.gnm1.ann1.J2NQJ1 Arachis hypogaea HOM05D003063 ORTHO05D003242 6.7e-22 107.5 116 50.0
arahy.Tifrunner.gnm1.ann1.NI516C Arachis hypogaea HOM05D003063 ORTHO05D003242 6.7e-22 107.5 116 50.0
AUR62002358 Chenopodium quinoa HOM05D003063 ORTHO05D003242 6.7e-22 107.5 114 48.2
COL.COLO4_06571 Corchorus olitorius HOM05D003063 ORTHO05D003242 6.7e-22 107.5 116 50.9
Gorai.011G139000 Gossypium raimondii HOM05D003063 ORTHO05D003242 6.7e-22 107.5 116 51.7
Duzib151G0337 Durio zibethinus HOM05D003063 ORTHO05D003242 1.1e-21 106.7 116 49.1
Migut.N03092 Erythranthe guttata HOM05D003063 ORTHO05D003242 1.5e-21 106.3 113 48.7
Manes.04G047800 Manihot esculenta HOM05D003063 ORTHO05D003242 3.3e-21 105.1 102 53.9
TAR362G0372 Trochodendron aralioides HOM05D003063 ORTHO05D003242 3.3e-21 105.1 117 47.9
AUR62023827 Chenopodium quinoa HOM05D003063 ORTHO05D003242 4.4e-21 104.8 114 47.4
Cc03_g12310 Coffea canephora HOM05D003063 ORTHO05D003242 4.4e-21 104.8 105 52.4
Gohir.D10G126000 Gossypium hirsutum HOM05D003063 ORTHO05D003242 5.7e-21 104.4 116 50.9
Thecc.04G172800 Theobroma cacao HOM05D003063 ORTHO05D003242 5.7e-21 104.4 116 49.1
MSTRG.4290 Avicennia marina HOM05D003063 ORTHO05D003242 7.4e-21 104.0 113 50.4
Manes.11G126100 Manihot esculenta HOM05D003063 ORTHO05D003242 7.4e-21 104.0 108 52.8
CANSAT78G0998 Cannabis sativa HOM05D003063 ORTHO05D003242 1.3e-20 103.2 114 50.0
TWI63G1624 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 1.3e-20 103.2 118 50.0
Ah.13g073590 Amaranthus hybridus HOM05D003063 ORTHO05D003242 1.7e-20 102.8 116 46.6
MELO3C029505.2 Cucumis melo HOM05D057221 ORTHO05D003242 1.7e-20 102.8 57 87.7
Lalb_Chr24g0396721 Lupinus albus HOM05D003063 ORTHO05D003242 2.2e-20 102.4 116 52.6
PGSC0003DMG400014614 Solanum tuberosum HOM05D003063 ORTHO05D003242 2.2e-20 102.4 112 50.9
Glyma.13G345900 Glycine max HOM05D003063 ORTHO05D003242 2.8e-20 102.1 116 51.7
CiPaw.01G095400 Carya illinoinensis HOM05D003063 ORTHO05D003242 3.7e-20 101.7 117 48.7
Glyma.15G028400 Glycine max HOM05D003063 ORTHO05D003242 3.7e-20 101.7 116 53.4
TAR633G0315 Trochodendron aralioides HOM05D003063 ORTHO05D003242 3.7e-20 101.7 116 49.1
GSVIVG01004107001 Vitis vinifera HOM05D003063 ORTHO05D003242 3.7e-20 101.7 117 49.6
Peaxi162Scf00180g00520 Petunia axillaris HOM05D003063 ORTHO05D003242 4.8e-20 101.3 112 44.6
Psat5g290560 Pisum sativum HOM05D003063 ORTHO05D003242 4.8e-20 101.3 115 47.0
Sabra17G0001800 Salix brachista HOM05D003063 ORTHO05D003242 4.8e-20 101.3 113 52.2
Nn1g09564 Nelumbo nucifera HOM05D003063 ORTHO05D003242 6.3e-20 100.9 116 46.6
Sopen08g004890 Solanum pennellii HOM05D003063 ORTHO05D003242 6.3e-20 100.9 112 49.1
MELO3C000155.2 Cucumis melo HOM05D003063 ORTHO05D003242 8.2e-20 100.5 66 78.8
Eucgr.H00339 Eucalyptus grandis HOM05D003063 ORTHO05D003242 8.2e-20 100.5 116 46.6
Phvul.005G154700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 8.2e-20 100.5 116 50.9
MSTRG.22013 Avicennia marina HOM05D003063 ORTHO05D003242 1.1e-19 100.1 113 46.9
Medtr2g099140 Medicago truncatula HOM05D003063 ORTHO05D003242 1.4e-19 99.8 112 53.6
Peaxi162Scf00075g01551 Petunia axillaris HOM05D003063 ORTHO05D003242 1.4e-19 99.8 110 50.9
Potri.017G023400 Populus trichocarpa HOM05D003063 ORTHO05D003242 1.4e-19 99.8 113 51.3
THA.LOC104804510 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 1.4e-19 99.8 117 45.3
Solyc08g014010.4 Solanum lycopersicum HOM05D003063 ORTHO05D003242 2.4e-19 99.0 112 47.3
Sabra07G0107600 Salix brachista HOM05D003063 ORTHO05D003242 3.1e-19 98.6 113 54.0
Nn7g37566 Nelumbo nucifera HOM05D003063 ORTHO05D003242 4.1e-19 98.2 112 46.4
Potri.007G132601 Populus trichocarpa HOM05D003063 ORTHO05D003242 4.1e-19 98.2 113 52.2
Hund12400 Selenicereus undatus HOM05D003063 ORTHO05D003242 5.3e-19 97.8 107 48.6
HanXRQChr03g0090201 Helianthus annuus HOM05D003063 ORTHO05D003242 9.1e-19 97.1 111 45.9
TWI38G2174 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 9.1e-19 97.1 113 51.3
DCAR_028419 Daucus carota HOM05D003063 ORTHO05D003242 1.2e-18 96.7 113 45.1
Dinv05088 Davidia involucrata HOM05D003063 ORTHO05D003242 1.5e-18 96.3 80 65.0
VMungo1080G0015 Vigna mungo HOM05D003063 ORTHO05D003242 2.0e-18 95.9 116 49.1
Sopen06g029490 Solanum pennellii HOM05D003063 ORTHO05D003242 2.6e-18 95.5 112 48.2
Glyma.12G050400 Glycine max HOM05D003063 ORTHO05D003242 3.4e-18 95.1 112 49.1
Lj3g0022705 Lotus japonicus HOM05D003063 ORTHO05D003242 4.5e-18 94.7 114 44.7
Solyc06g073140.2 Solanum lycopersicum HOM05D003063 ORTHO05D003242 5.9e-18 94.4 100 48.0
Lj6A108T23 Lonicera japonica HOM05D003063 ORTHO05D003242 7.7e-18 94.0 116 48.3
arahy.Tifrunner.gnm1.ann1.01HRZR Arachis hypogaea HOM05D003063 ORTHO05D003242 1.0e-17 93.6 114 45.6
ECA240G0473 Erigeron canadensis HOM05D003063 ORTHO05D003242 1.0e-17 93.6 112 45.5
HanXRQChr13g0419471 Helianthus annuus HOM05D003063 ORTHO05D003242 1.7e-17 92.8 113 45.1
Lsat_1_v5_gn_3_111480 Lactuca sativa HOM05D003063 ORTHO05D003242 1.7e-17 92.8 111 45.0
PGR142G1686 Punica granatum HOM05D003063 ORTHO05D003242 1.7e-17 92.8 114 47.4
VMungo1127G1949 Vigna mungo HOM05D003063 ORTHO05D003242 1.4e-16 89.7 112 42.9
TAR633G1477 Trochodendron aralioides HOM05D003063 ORTHO05D003242 3.2e-16 88.6 98 50.0
MD04G1046200 Malus domestica HOM05D003063 ORTHO05D003242 5.5e-16 87.8 81 63.0
CAN.G65.160 Capsicum annuum HOM05D003063 ORTHO05D003242 7.2e-16 87.4 112 41.1
MBI07_g05951_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 7.2e-16 87.4 116 44.0
Phvul.011G052700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 9.4e-16 87.0 112 42.0
unitig_578.g16252 Utricularia gibba HOM05D003063 ORTHO05D003242 3.6e-15 85.1 109 41.3
Aqoxy4G00265 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 6.1e-15 84.3 118 39.8
HPP92_023721 Vanilla planifolia HOM05D003063 ORTHO05D003242 6.1e-15 84.3 110 41.8
HanXRQChr13g0419461 Helianthus annuus HOM05D003063 ORTHO05D003242 8.0e-15 84.0 101 47.5
PSO837G0062 Papaver somniferum HOM05D003063 ORTHO05D003242 8.0e-15 84.0 116 42.2
SalBow6G7191 Salvia bowleyana HOM05D003063 ORTHO05D003242 1.4e-14 83.2 76 55.3
EL10Ac3g06022 Beta vulgaris HOM05D003063 ORTHO05D003242 2.3e-14 82.4 102 43.1
SalBow2G0231 Salvia bowleyana HOM05D003063 ORTHO05D003242 3.9e-14 81.6 112 42.9
SGA_v2.0_scaffold120G33008 Striga asiatica HOM05D003063 ORTHO05D003242 8.8e-14 80.5 76 51.3
PSO017G4804 Papaver somniferum HOM05D003063 ORTHO05D003242 4.4e-13 78.2 116 42.2
CSS0005943 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 7.4e-13 77.4 76 51.3
CSS0015309 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 7.4e-13 77.4 76 51.3
Ca_01244_v3 Cicer arietinum L. HOM05D003063 ORTHO05D003242 7.4e-13 77.4 79 53.2
Lalb_Chr03g0025991 Lupinus albus HOM05D003063 ORTHO05D003242 7.4e-13 77.4 101 40.6
vmacro00673 Vaccinium macrocarpon HOM05D003063 ORTHO05D003242 1.3e-12 76.6 75 52.0
Zm00001eb168740 Zea mays HOM05D003063 ORTHO05D003242 1.7e-12 76.3 114 38.6
Nitab4.5_0000242g0110 Nicotiana tabacum HOM05D003063 ORTHO05D003242 2.8e-12 75.5 82 45.1
Rhsim09G0017900 Rhododendron simsii HOM05D003063 ORTHO05D003242 6.3e-12 74.3 75 52.0
ATR0743G154 Amborella trichopoda HOM05D003063 ORTHO05D003242 1.1e-11 73.6 117 35.9
Nitab4.5_0001586g0230 Nicotiana tabacum HOM05D003063 ORTHO05D003242 3.1e-11 72.0 75 46.7
PGSC0003DMG400026919 Solanum tuberosum HOM05D003063 ORTHO05D003242 4.1e-11 71.6 112 38.4
TAR633G1709 Trochodendron aralioides HOM05D003063 ORTHO05D003242 9.1e-11 70.5 103 41.7
Nitab4.5_0002553g0050 Nicotiana tabacum HOM05D003063 ORTHO05D003242 1.2e-10 70.1 75 45.3
TPR.G34195 Trifolium pratense HOM05D001295 ORTHO05D003242 3.5e-10 68.6 66 57.6
Hma1.2p1_0487F.1_g163580 Hydrangea macrophylla HOM05D003063 ORTHO05D003242 5.9e-10 67.8 108 38.9
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 1.3e-09 66.6 121 38.0
Os11g0264500 Oryza sativa ssp. japonica HOM05D003063 ORTHO05D003242 2.2e-09 65.9 103 34.0
Ca_20804_v3 Cicer arietinum L. HOM05D001295 ORTHO05D003242 3.8e-09 65.1 79 38.0
VMungo0647G0762 Vigna mungo HOM05D000936 ORTHO05D003242 8.5e-09 63.9 47 61.7
CiPaw.01G004400 Carya illinoinensis HOM05D003063 ORTHO05D003242 3.2e-08 62.0 110 34.5
Prupe.6G220300 Prunus persica HOM05D003063 ORTHO05D003242 5.5e-08 61.2 110 39.1
Aqoxy6G02607 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 1.6e-07 59.7 81 42.0
Oeu011986.1 Olea europaea HOM05D003063 ORTHO05D003242 1.6e-07 59.7 119 36.1
Pp3c10_8020 Physcomitrium patens HOM05D001077 ORTHO05D003242 2.1e-07 59.3 112 31.2
THA.LOC104827634 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 2.1e-07 59.3 114 34.2
Mapoly0006s0022 Marchantia polymorpha HOM05D001077 ORTHO05D003242 2.7e-07 58.9 86 33.7
TAR381G1137 Trochodendron aralioides HOM05D003063 ORTHO05D003242 4.7e-07 58.2 71 45.1
Ciclev10027120m.g Citrus clementina HOM05D003063 ORTHO05D003242 6.1e-07 57.8 67 49.3
Dinv26934 Davidia involucrata HOM05D003063 ORTHO05D003242 8.0e-07 57.4 112 33.0
Atru.chr3.1013 Acer truncatum HOM05D003063 ORTHO05D003242 1.0e-06 57.0 108 35.2
Solyc02g092350.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.0e-06 57.0 111 33.3
Sopen02g036900 Solanum pennellii HOM05D003063 ORTHO05D003242 1.0e-06 57.0 111 33.3
TWI73G0373 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 1.0e-06 57.0 115 33.9
PSO675G8643 Papaver somniferum HOM05D003063 ORTHO05D003242 1.4e-06 56.6 69 43.5
Rhsim08G0093400 Rhododendron simsii HOM05D003063 ORTHO05D003242 1.4e-06 56.6 78 35.9
Cpa.g.sc6.14 Carica papaya HOM05D003063 ORTHO05D003242 2.3e-06 55.8 113 31.0
Nitab4.5_0000142g0080 Nicotiana tabacum HOM05D003063 ORTHO05D003242 2.3e-06 55.8 71 39.4
Nitab4.5_0001521g0050 Nicotiana tabacum HOM05D003063 ORTHO05D003242 2.3e-06 55.8 42 59.5
PGSC0003DMG400021416 Solanum tuberosum HOM05D003063 ORTHO05D003242 2.3e-06 55.8 111 33.3
EL10Ac6g15616 Beta vulgaris HOM05D003063 ORTHO05D003242 3.0e-06 55.5 67 38.8
CDE02G1048 Ceratophyllum demersum HOM05D003063 ORTHO05D003242 3.0e-06 55.5 77 36.4
PSO541G1933 Papaver somniferum HOM05D003063 ORTHO05D003242 3.0e-06 55.5 69 42.0
QL06p039562 Quercus lobata HOM05D003063 ORTHO05D003242 3.0e-06 55.5 125 31.2
AUR62004011 Chenopodium quinoa HOM05D003063 ORTHO05D003242 4.0e-06 55.1 78 37.2
PGR102G0884 Punica granatum HOM05D003063 ORTHO05D003242 4.0e-06 55.1 120 30.8
FvH4_1g17750 Fragaria vesca HOM05D003063 ORTHO05D003242 5.2e-06 54.7 71 42.3
Nitab4.5_0002119g0070 Nicotiana tabacum HOM05D003063 ORTHO05D003242 5.2e-06 54.7 67 40.3
GSVIVG01002076001 Vitis vinifera HOM05D003063 ORTHO05D003242 5.2e-06 54.7 113 34.5
CAN.G1075.39 Capsicum annuum HOM05D003063 ORTHO05D003242 6.7e-06 54.3 71 38.0
FAN07G0719 Fragaria x ananassa HOM05D001077 ORTHO05D001053 6.7e-06 54.3 97 36.1
Pp3c2_14290 Physcomitrium patens HOM05D001077 ORTHO05D003242 6.7e-06 54.3 111 31.5


User provided reference genes

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