Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031862.2 Cucumis melo HOM05D002696 ORTHO05D169332 1.3e-112 409.8 220 100.0
MELO3C023269.2 Cucumis melo HOM05D000028 ORTHO05D001176 3.1e-34 149.4 93 86.0
CsaV3_2G018040 Cucumis sativus L. HOM05D000028 ORTHO05D001176 8.8e-29 131.3 94 77.7
CsaV3_2G018030 Cucumis sativus L. HOM05D000028 ORTHO05D001176 3.5e-25 119.4 95 65.3
MELO3C023270.2 Cucumis melo HOM05D000028 ORTHO05D001176 2.3e-24 116.7 95 64.2
ClCG02G000730 Citrullus lanatus HOM05D000028 ORTHO05D001176 3.6e-22 109.4 95 62.1
Sed0006768 Sechium edule HOM05D000028 ORTHO05D001176 1.8e-21 107.1 96 62.5
Sed0007505 Sechium edule HOM05D000028 ORTHO05D001176 2.9e-19 99.8 96 58.3
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 2.0e-17 93.6 59 83.1
CSS0023892 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D001176 4.7e-14 82.4 93 44.1
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 6.2e-14 82.0 53 84.9
Medtr3g095460 Medicago truncatula HOM05D000028 ORTHO05D001176 1.0e-13 81.3 95 44.2
Medtr8g092650 Medicago truncatula HOM05D000028 ORTHO05D001176 1.8e-13 80.5 95 48.4
Psat7g048840 Pisum sativum HOM05D000028 ORTHO05D001176 4.0e-13 79.3 95 47.4
Ciclev10026240m.g Citrus clementina HOM05D000028 ORTHO05D001176 8.9e-13 78.2 95 47.4
TPR.G2203 Trifolium pratense HOM05D000028 ORTHO05D001176 2.6e-12 76.6 95 44.2
Lj4g0005572 Lotus japonicus HOM05D000028 ORTHO05D001176 5.8e-12 75.5 95 45.3
QL06p030793 Quercus lobata HOM05D000028 ORTHO05D001176 1.3e-11 74.3 93 47.3
CiPaw.03G129300 Carya illinoinensis HOM05D000028 ORTHO05D001176 1.7e-11 73.9 93 44.1
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 1.7e-11 73.9 52 78.8
Actinidia12236 Actinidia chinensis HOM05D000028 ORTHO05D001176 3.7e-11 72.8 95 45.3
GSVIVG01026614001 Vitis vinifera HOM05D000028 ORTHO05D001176 3.7e-11 72.8 95 43.2
Atru.chr4.573 Acer truncatum HOM05D000028 ORTHO05D001176 4.9e-11 72.4 93 43.0
Cfa002812 Carpinus fangiana HOM05D000028 ORTHO05D001176 6.4e-11 72.0 93 43.0
PGR119G0333 Punica granatum HOM05D000028 ORTHO05D001176 6.4e-11 72.0 92 42.4
PGR119G0238 Punica granatum HOM05D000028 ORTHO05D001176 8.3e-11 71.6 92 42.4
Dinv15099 Davidia involucrata HOM05D000028 ORTHO05D001176 1.4e-10 70.9 93 43.0
Lj1g0025602 Lotus japonicus HOM05D000028 ORTHO05D001176 1.4e-10 70.9 95 42.1
Eucgr.I00251 Eucalyptus grandis HOM05D000028 ORTHO05D001176 2.4e-10 70.1 92 43.5
FAN26G1978 Fragaria x ananassa HOM05D000028 ORTHO05D001176 2.4e-10 70.1 107 39.3
Thecc.01G119700 Theobroma cacao HOM05D000028 ORTHO05D001176 2.4e-10 70.1 93 43.0
VMungo0251G2152 Vigna mungo HOM05D000028 ORTHO05D001176 3.2e-10 69.7 95 43.2
Lalb_Chr11g0068231 Lupinus albus HOM05D000028 ORTHO05D001176 4.1e-10 69.3 95 45.3
COL.COLO4_22396 Corchorus olitorius HOM05D000028 ORTHO05D001176 5.4e-10 68.9 94 44.7
Phvul.002G268800 Phaseolus vulgaris HOM05D000028 ORTHO05D001176 5.4e-10 68.9 95 42.1
Lj2A577T33 Lonicera japonica HOM05D000028 ORTHO05D001176 9.2e-10 68.2 92 43.5
Actinidia30983 Actinidia chinensis HOM05D000028 ORTHO05D001176 1.6e-09 67.4 93 40.9
arahy.Tifrunner.gnm1.ann1.0J3BLQ Arachis hypogaea HOM05D000028 ORTHO05D001176 2.0e-09 67.0 95 43.2
RcHm_v2.0_Chr2g0119241 Rosa chinensis HOM05D000028 ORTHO05D001176 2.0e-09 67.0 105 38.1
Duzib147G0114 Durio zibethinus HOM05D000028 ORTHO05D001176 2.7e-09 66.6 93 41.9
TAR628G0456 Trochodendron aralioides HOM05D000028 ORTHO05D001176 2.7e-09 66.6 95 37.9
VMungo1309G2257 Vigna mungo HOM05D000028 ORTHO05D001176 2.7e-09 66.6 95 41.1
Sc03g0004710 Simmondsia chinensis HOM05D000028 ORTHO05D001176 3.5e-09 66.2 96 40.6
TAR376G0987 Trochodendron aralioides HOM05D000028 ORTHO05D001176 3.5e-09 66.2 94 39.4
Aqoxy6G02746 Aquilegia oxysepala HOM05D000028 ORTHO05D001176 4.6e-09 65.9 93 37.6
arahy.Tifrunner.gnm1.ann1.B0W2CD Arachis hypogaea HOM05D000028 ORTHO05D001176 4.6e-09 65.9 94 40.4
Manes.12G149200 Manihot esculenta HOM05D000028 ORTHO05D001176 4.6e-09 65.9 94 44.7
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 7.8e-09 65.1 58 53.4
vmacro18653 Vaccinium macrocarpon HOM05D000028 ORTHO05D001176 7.8e-09 65.1 93 37.6
ClCG01G015670 Citrullus lanatus HOM05D000028 ORTHO05D001176 1.0e-08 64.7 98 38.8
MELO3C008027.2 Cucumis melo HOM05D000028 ORTHO05D001176 1.0e-08 64.7 95 40.0
Glyma.05G187900 Glycine max HOM05D000028 ORTHO05D001176 1.0e-08 64.7 95 40.0
Sed0018047 Sechium edule HOM05D000028 ORTHO05D001176 1.0e-08 64.7 95 42.1
CAN.G249.20 Capsicum annuum HOM05D000028 ORTHO05D001176 1.3e-08 64.3 140 35.0
CsaV3_6G041950 Cucumis sativus L. HOM05D000028 ORTHO05D001176 1.3e-08 64.3 95 40.0
Potri.019G004100 Populus trichocarpa HOM05D000028 ORTHO05D001176 1.3e-08 64.3 93 41.9
Sabra19G0003900 Salix brachista HOM05D000028 ORTHO05D001176 1.3e-08 64.3 93 41.9
Sabra19G0021400 Salix brachista HOM05D000028 ORTHO05D001176 1.3e-08 64.3 93 41.9
TPR.G32954 Trifolium pratense HOM05D000028 ORTHO05D001176 1.3e-08 64.3 95 40.0
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 1.7e-08 63.9 60 56.7
Cc07_g17010 Coffea canephora HOM05D000028 ORTHO05D001176 1.7e-08 63.9 140 32.1
arahy.Tifrunner.gnm1.ann1.Y3E92V Arachis hypogaea HOM05D000028 ORTHO05D001176 2.3e-08 63.5 94 39.4
Glyma.06G149500 Glycine max HOM05D000028 ORTHO05D001176 2.3e-08 63.5 95 40.0
HanXRQChr09g0253791 Helianthus annuus HOM05D000028 ORTHO05D001176 2.3e-08 63.5 93 41.9
Nn5g28741 Nelumbo nucifera HOM05D000028 ORTHO05D001176 2.3e-08 63.5 93 35.5
Phvul.009G147200 Phaseolus vulgaris HOM05D000028 ORTHO05D001176 2.3e-08 63.5 95 40.0
Aa31LG1G17210 Aethionema arabicum HOM05D000028 ORTHO05D001176 3.0e-08 63.2 92 41.3
CDE08G0760 Ceratophyllum demersum HOM05D000028 ORTHO05D001176 3.0e-08 63.2 92 41.3
DCAR_011476 Daucus carota HOM05D000028 ORTHO05D001176 3.0e-08 63.2 108 38.0
Lalb_Chr23g0272491 Lupinus albus HOM05D000028 ORTHO05D001176 3.0e-08 63.2 95 37.9
MSTRG.2513 Avicennia marina HOM05D000028 ORTHO05D001176 3.9e-08 62.8 141 31.9
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 3.9e-08 62.8 66 47.0
MELO3C008025.2 Cucumis melo HOM05D000028 ORTHO05D001176 3.9e-08 62.8 93 40.9
Migut.L00045 Erythranthe guttata HOM05D000028 ORTHO05D001176 3.9e-08 62.8 160 31.2
Glyma.08G146100 Glycine max HOM05D000028 ORTHO05D001176 3.9e-08 62.8 95 36.8
Potri.001G307800 Populus trichocarpa HOM05D000028 ORTHO05D001176 3.9e-08 62.8 96 40.6
TPR.G18718 Trifolium pratense HOM05D000028 ORTHO05D001176 3.9e-08 62.8 95 40.0
BcaC01g02702 Brassica carinata HOM05D000028 ORTHO05D001176 5.0e-08 62.4 92 41.3
BolC3t18405H Brassica oleracea HOM05D000028 ORTHO05D001176 5.0e-08 62.4 92 41.3
Os01g0546400 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001176 5.0e-08 62.4 93 38.7
Sed0000353 Sechium edule HOM05D000028 ORTHO05D001176 5.0e-08 62.4 93 40.9
Nn1g06082 Nelumbo nucifera HOM05D000028 ORTHO05D001176 6.6e-08 62.0 93 35.5
Os01g0207700 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001176 6.6e-08 62.0 92 41.3
A06p31490 Brassica napus HOM05D000028 ORTHO05D001176 8.6e-08 61.6 92 41.3
C03p61470 Brassica napus HOM05D000028 ORTHO05D001176 8.6e-08 61.6 92 41.3
BraA06t26088Z Brassica rapa HOM05D000028 ORTHO05D001176 8.6e-08 61.6 92 41.3
Rhsim08G0004000 Rhododendron simsii HOM05D000028 ORTHO05D001176 8.6e-08 61.6 95 37.9
RcHm_v2.0_Chr5g0041201 Rosa chinensis HOM05D000002 ORTHO05D000001 8.6e-08 61.6 118 34.7
Dinv12125 Davidia involucrata HOM05D000028 ORTHO05D001176 1.1e-07 61.2 93 39.8
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.1e-07 61.2 55 56.4
SGA_v2.0_scaffold2G01253 Striga asiatica HOM05D000028 ORTHO05D001176 1.1e-07 61.2 144 31.2
AT5G64700 Arabidopsis thaliana HOM05D000028 ORTHO05D001176 1.5e-07 60.8 93 41.9
BolC9t53909H Brassica oleracea HOM05D000028 ORTHO05D001176 1.5e-07 60.8 108 35.2
Carub.0008s2551 Capsella rubella HOM05D000028 ORTHO05D001176 1.5e-07 60.8 92 41.3
CsaV3_6G041910 Cucumis sativus L. HOM05D000028 ORTHO05D001176 1.5e-07 60.8 93 37.6
Lalb_Chr08g0238671 Lupinus albus HOM05D000028 ORTHO05D001176 1.5e-07 60.8 95 36.8
Manes.13G082200 Manihot esculenta HOM05D000028 ORTHO05D001176 1.5e-07 60.8 95 36.8
Zm00001eb267200 Zea mays HOM05D000028 ORTHO05D001176 1.5e-07 60.8 164 32.3
ClCG01G015700 Citrullus lanatus HOM05D000028 ORTHO05D001176 1.9e-07 60.5 92 38.0
Sopen11g001440 Solanum pennellii HOM05D000028 ORTHO05D001176 1.9e-07 60.5 140 32.9
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.9e-07 60.5 70 45.7
arahy.Tifrunner.gnm1.ann1.B0V0GT Arachis hypogaea HOM05D000028 ORTHO05D001176 2.5e-07 60.1 95 44.2
Peaxi162Scf00025g02433 Petunia axillaris HOM05D000028 ORTHO05D001176 2.5e-07 60.1 148 31.1
EL10Ac6g15246 Beta vulgaris HOM05D000028 ORTHO05D001176 3.3e-07 59.7 93 32.3
Cc07_g17000 Coffea canephora HOM05D000028 ORTHO05D001176 3.3e-07 59.7 93 38.7
Gohir.D11G233300 Gossypium hirsutum HOM05D000028 ORTHO05D001176 3.3e-07 59.7 99 37.4
Medtr3g095420 Medicago truncatula HOM05D000028 ORTHO05D001176 3.3e-07 59.7 93 31.2
QL06p030845 Quercus lobata HOM05D000028 ORTHO05D001176 3.3e-07 59.7 93 37.6
A09p08790 Brassica napus HOM05D000028 ORTHO05D001176 4.3e-07 59.3 92 38.0
BraA09t36531Z Brassica rapa HOM05D000028 ORTHO05D001176 4.3e-07 59.3 92 38.0
Cc07_g17560 Coffea canephora HOM05D000028 ORTHO05D001176 4.3e-07 59.3 93 38.7
Gohir.A11G226625 Gossypium hirsutum HOM05D000028 ORTHO05D001176 4.3e-07 59.3 93 37.6
Gorai.002G150700 Gossypium raimondii HOM05D000028 ORTHO05D001176 4.3e-07 59.3 93 37.6
Sp2g27770 Schrenkiella parvula HOM05D000028 ORTHO05D001176 4.3e-07 59.3 92 40.2
CARHR278690 Cardamine hirsuta HOM05D000028 ORTHO05D001176 5.6e-07 58.9 93 39.8
MELO3C032911.2 Cucumis melo HOM05D000028 ORTHO05D001176 5.6e-07 58.9 92 38.0
Os05g0106200 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001176 5.6e-07 58.9 143 31.5
Sabra16G0193700 Salix brachista HOM05D000028 ORTHO05D001176 5.6e-07 58.9 94 39.4
Sed0024243 Sechium edule HOM05D000028 ORTHO05D001176 5.6e-07 58.9 96 41.7
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 5.6e-07 58.9 70 45.7
ATR0820G056 Amborella trichopoda HOM05D000028 ORTHO05D001176 7.3e-07 58.5 96 40.6
AL8G42150 Arabidopsis lyrata HOM05D000028 ORTHO05D001176 7.3e-07 58.5 94 40.4
MSTRG.3824 Avicennia marina HOM05D000028 ORTHO05D001176 7.3e-07 58.5 93 39.8
BcaC04g23294 Brassica carinata HOM05D000028 ORTHO05D001176 7.3e-07 58.5 108 35.2
C09p10050 Brassica napus HOM05D000028 ORTHO05D001176 7.3e-07 58.5 108 35.2
FAN28G2706 Fragaria x ananassa HOM05D000028 ORTHO05D001176 7.3e-07 58.5 148 32.4
Nitab4.5_0004021g0050 Nicotiana tabacum HOM05D000028 ORTHO05D001176 7.3e-07 58.5 140 33.6
Prupe.6G160300 Prunus persica HOM05D000028 ORTHO05D001176 7.3e-07 58.5 93 36.6
Zm00001eb356070 Zea mays HOM05D000028 ORTHO05D001176 7.3e-07 58.5 166 29.5
ClCG01G015710 Citrullus lanatus HOM05D000028 ORTHO05D001176 9.5e-07 58.2 93 36.6
MELO3C008026.2 Cucumis melo HOM05D000028 ORTHO05D001176 9.5e-07 58.2 93 38.7
Glyma.06G149600 Glycine max HOM05D000028 ORTHO05D001176 9.5e-07 58.2 132 32.6
Os07g0524900 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001176 9.5e-07 58.2 93 44.1
CANSAT01G1216 Cannabis sativa HOM05D000028 ORTHO05D001176 1.2e-06 57.8 97 39.2
Thhalv10004484m.g Eutrema salsugineum HOM05D000028 ORTHO05D001176 1.2e-06 57.8 92 41.3
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-06 57.8 60 48.3
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.2e-06 57.8 71 43.7
Gohir.A02G137800 Gossypium hirsutum HOM05D000028 ORTHO05D001176 1.2e-06 57.8 92 40.2
Gohir.D03G048500 Gossypium hirsutum HOM05D000028 ORTHO05D001176 1.2e-06 57.8 92 40.2
Gorai.003G049700 Gossypium raimondii HOM05D000028 ORTHO05D001176 1.2e-06 57.8 92 40.2
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 1.6e-06 57.4 60 48.3
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.6e-06 57.4 60 48.3
CsaV3_6G041980 Cucumis sativus L. HOM05D000028 ORTHO05D001176 2.1e-06 57.0 93 36.6
BcaB04g19987 Brassica carinata HOM05D000028 ORTHO05D001176 2.8e-06 56.6 92 39.1
CsaV3_6G041960 Cucumis sativus L. HOM05D000028 ORTHO05D001176 2.8e-06 56.6 93 36.6
FvH4_1g23640 Fragaria vesca HOM05D000028 ORTHO05D001176 2.8e-06 56.6 93 36.6
unitig_88.g27745 Utricularia gibba HOM05D000028 ORTHO05D001176 2.8e-06 56.6 96 38.5
TWI79G1298 Tripterygium wilfordii HOM05D000028 ORTHO05D001176 3.6e-06 56.2 92 41.3
MELO3C027201.2 Cucumis melo HOM05D000028 ORTHO05D001176 4.7e-06 55.8 92 37.0
MELO3C033068.2 Cucumis melo HOM05D000028 ORTHO05D001176 4.7e-06 55.8 96 33.3
CsaV3_6G041920 Cucumis sativus L. HOM05D000028 ORTHO05D001176 4.7e-06 55.8 96 35.4
Zm00001eb267230 Zea mays HOM05D000028 ORTHO05D001176 4.7e-06 55.8 164 27.4
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 6.2e-06 55.5 64 42.2
Duzib187G1732 Durio zibethinus HOM05D000028 ORTHO05D001176 6.2e-06 55.5 93 37.6
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.2e-06 55.5 85 38.8
Nitab4.5_0019010g0010 Nicotiana tabacum HOM05D000028 ORTHO05D001176 6.2e-06 55.5 130 33.8
CSS0048401 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 8.1e-06 55.1 88 42.0
Duzib147G0414 Durio zibethinus HOM05D000028 ORTHO05D001176 8.1e-06 55.1 93 39.8
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 8.1e-06 55.1 76 40.8
Os07g0527000 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001176 8.1e-06 55.1 91 38.5


User provided reference genes

Program Settings