Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 0.0e+00 1194.1 587 100.0
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.8e-223 778.9 489 84.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.2e-211 738.8 501 78.2
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.2e-158 561.2 426 69.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.6e-154 550.4 363 76.6
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-128 464.5 482 53.7
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.5e-128 464.2 478 53.3
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.0e-128 463.8 478 53.1
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 4.9e-127 459.1 482 53.3
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.4e-126 457.6 482 53.1
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 9.3e-126 454.9 487 52.6
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.9e-124 449.5 480 50.6
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 6.7e-124 448.7 497 50.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 8.7e-124 448.4 507 50.1
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 8.7e-124 448.4 484 50.4
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.5e-123 446.8 510 50.0
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 2.1e-122 443.7 471 51.8
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 6.3e-122 442.2 484 52.5
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.1e-121 439.9 494 51.6
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 4.1e-121 439.5 492 51.4
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 9.0e-121 438.3 494 48.6
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 3.4e-120 436.4 491 50.9
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 4.2e-118 429.5 490 50.4
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.5e-118 429.1 483 51.3
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 5.5e-118 429.1 516 49.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 2.3e-116 423.7 531 47.3
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 3.0e-116 423.3 479 50.3
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.1e-115 421.4 469 50.1
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 5.7e-115 419.1 488 48.6
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.4e-115 418.7 491 48.1
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.6e-114 417.5 481 49.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.4e-113 414.5 486 49.0
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.1e-113 413.3 473 49.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 7.7e-112 408.7 485 49.5
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 2.2e-111 407.1 492 46.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.5e-110 403.7 560 42.7
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.5e-110 402.5 496 46.0
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-109 401.4 496 46.2
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.6e-109 401.0 478 49.2
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.6e-109 401.0 507 46.5
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-109 400.6 496 46.0
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 3.6e-109 399.8 485 48.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.6e-109 399.4 499 46.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.0e-108 398.3 498 45.4
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.8e-106 389.4 512 44.3
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.1e-105 388.3 482 47.5
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.7e-103 380.9 483 46.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 8.5e-103 378.6 480 47.9
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.5e-102 377.1 498 44.0
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.2e-102 376.7 477 46.1
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 9.4e-102 375.2 490 45.7
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 9.4e-102 375.2 498 47.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.6e-101 374.4 486 44.7
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.1e-101 374.0 488 44.5
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 3.9e-100 369.8 445 48.1
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 5.2e-100 369.4 518 44.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-99 367.5 484 43.8
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 3.7e-98 363.2 485 44.3
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.3e-98 362.5 484 43.2
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.1e-97 361.7 482 44.0
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.8e-97 360.9 486 42.2
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.8e-97 360.9 485 44.3
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.4e-97 360.5 485 44.3
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 4.1e-97 359.8 480 42.7
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 7.0e-97 359.0 502 42.4
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.2e-96 358.2 473 43.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.6e-96 357.1 487 43.1
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.6e-96 357.1 519 42.8
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 3.5e-96 356.7 487 42.9
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.0e-95 355.1 480 44.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.7e-95 354.4 484 44.0
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 8.5e-95 352.1 492 43.1
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.5e-94 351.3 491 42.4
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.9e-94 350.9 478 44.1
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 3.2e-94 350.1 486 42.2
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 5.5e-94 349.4 485 41.6
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 5.5e-94 349.4 485 41.6
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-93 348.2 485 41.4
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.2e-93 348.2 485 42.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 4.7e-93 346.3 490 42.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 6.1e-93 345.9 504 40.9
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.4e-92 344.7 481 41.0
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.4e-92 344.7 486 42.6
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.3e-92 344.0 486 43.4
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 6.7e-92 342.4 490 43.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 8.8e-92 342.0 487 43.3
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 3.3e-91 340.1 484 41.3
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 3.3e-91 340.1 483 43.3
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 3.3e-91 340.1 481 42.4
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 7.5e-91 339.0 484 41.1
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 1.3e-90 338.2 483 43.1
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.8e-89 334.3 489 40.9
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 5.3e-89 332.8 482 42.7
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 7.0e-89 332.4 678 36.1
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 7.7e-88 328.9 457 42.7
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.1e-86 325.1 477 41.1
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.2e-86 323.6 489 40.5
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 7.2e-86 322.4 482 41.1
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.6e-85 321.2 478 41.8
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.8e-82 310.5 509 39.7
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.3e-79 301.6 484 39.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 4.2e-78 296.6 488 40.4
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 3.6e-77 293.5 329 48.6
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 6.1e-77 292.7 487 38.0
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 2.6e-75 287.3 276 55.8
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 7.5e-75 285.8 334 47.6
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.8e-74 283.9 491 36.5
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.0e-71 275.4 485 37.9
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.0e-71 275.4 512 36.3
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.9e-71 273.9 461 39.0
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.8e-71 273.5 455 39.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 8.6e-71 272.3 474 38.6
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 6.8e-68 262.7 367 43.3
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-66 258.5 356 44.1
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.2e-66 257.7 476 38.7
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 3.7e-66 256.9 503 36.0
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 5.9e-64 249.6 471 36.3
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 5.9e-64 249.6 499 34.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 3.0e-63 247.3 285 47.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 6.8e-60 236.1 273 46.9
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.2e-59 235.3 300 44.7
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.4e-57 228.4 511 31.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.9e-54 218.0 423 35.2
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.6e-51 207.6 480 32.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 7.5e-51 206.1 264 47.0
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.2e-45 186.4 265 42.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 6.2e-45 186.4 424 33.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.7e-42 178.3 175 51.4
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 6.9e-36 156.4 319 36.7
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.1e-30 139.0 351 30.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 6.9e-28 129.8 208 37.5
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 9.9e-27 125.9 114 50.0
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.7e-26 125.2 112 50.0
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.6e-24 118.6 109 48.6
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.1e-23 113.6 135 46.7
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 8.7e-23 112.8 147 42.2
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-20 105.9 464 25.2
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 6.9e-20 103.2 180 37.8
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.2e-19 102.4 170 40.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 5.8e-19 100.1 169 41.4
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 9.3e-17 92.8 210 28.6
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 8.7e-15 86.3 609 22.3
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.9e-14 85.1 130 43.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 5.6e-14 83.6 250 29.2
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 9.0e-12 76.3 278 27.7
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 7.9e-08 63.2 122 31.1
CsaV3_3G017160 Cucumis sativus L. HOM05D004671 ORTHO05D005638 5.1e-07 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 4.3e-06 57.4 91 39.6
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 4.3e-06 57.4 87 42.5


User provided reference genes

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