Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031743.2 Cucumis melo HOM05D001309 ORTHO05D034971 5.6e-104 380.9 191 100.0
ClCG11G001650 Citrullus lanatus HOM05D000606 ORTHO05D002249 1.5e-19 100.5 54 90.7
QL05p002086 Quercus lobata HOM05D008595 ORTHO05D000385 2.1e-18 96.7 147 36.7
CsaV3_2G001350 Cucumis sativus L. HOM05D000606 ORTHO05D002249 3.6e-18 95.9 54 85.2
Sed0020907 Sechium edule HOM05D000606 ORTHO05D002249 6.7e-17 91.7 56 78.6
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 3.3e-16 89.4 131 39.7
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 5.7e-16 88.6 133 39.8
MD15G1435100 Malus domestica HOM05D008595 ORTHO05D000669 8.2e-15 84.7 131 38.9
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 7.0e-14 81.6 136 37.5
QL02p084387 Quercus lobata HOM05D000002 ORTHO05D000001 2.9e-12 76.3 96 39.6
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.0e-12 75.5 124 33.1
Potri.018G050800 Populus trichocarpa HOM05D000606 ORTHO05D002249 3.2e-11 72.8 54 70.4
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.2e-11 72.4 124 32.3
CiPaw.04G147300 Carya illinoinensis HOM05D000606 ORTHO05D002249 7.2e-11 71.6 55 70.9
Manes.03G037000 Manihot esculenta HOM05D000606 ORTHO05D002249 7.2e-11 71.6 55 69.1
CiPaw.03G211300 Carya illinoinensis HOM05D000606 ORTHO05D002249 9.4e-11 71.2 53 66.0
Gohir.A05G031900 Gossypium hirsutum HOM05D000606 ORTHO05D002249 3.6e-10 69.3 56 66.1
Cfa003048 Carpinus fangiana HOM05D000606 ORTHO05D002249 4.7e-10 68.9 53 67.9
Duzib150G0785 Durio zibethinus HOM05D000606 ORTHO05D002249 6.1e-10 68.6 44 77.3
MSTRG.26450 Avicennia marina HOM05D000606 ORTHO05D002249 8.0e-10 68.2 53 64.2
Hma1.2p1_0672F.1_g200940 Hydrangea macrophylla HOM05D000606 ORTHO05D002249 8.0e-10 68.2 53 62.3
arahy.Tifrunner.gnm1.ann1.465ER6 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.0e-09 67.8 129 32.6
Duzib187G1509 Durio zibethinus HOM05D000606 ORTHO05D002249 1.0e-09 67.8 58 60.3
MD15G1434900 Malus domestica HOM05D005763 ORTHO05D005970 1.0e-09 67.8 151 30.5
Nitab4.5_0002642g0020 Nicotiana tabacum HOM05D000606 ORTHO05D002249 1.0e-09 67.8 53 64.2
Nitab4.5_0002824g0020 Nicotiana tabacum HOM05D000606 ORTHO05D002249 1.0e-09 67.8 53 64.2
arahy.Tifrunner.gnm1.ann1.LQJ2G8 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.4e-09 67.4 129 32.6
Dinv36796 Davidia involucrata HOM05D000606 ORTHO05D002249 1.4e-09 67.4 50 64.0
Potri.006G146500 Populus trichocarpa HOM05D000606 ORTHO05D002249 1.4e-09 67.4 54 66.7
Thecc.09G083200 Theobroma cacao HOM05D000606 ORTHO05D002249 1.8e-09 67.0 57 63.2
Gohir.D06G073000 Gossypium hirsutum HOM05D000606 ORTHO05D002249 2.3e-09 66.6 56 60.7
Gorai.010G085300 Gossypium raimondii HOM05D000606 ORTHO05D002249 2.3e-09 66.6 56 60.7
Atru.chr7.1645 Acer truncatum HOM05D000606 ORTHO05D002249 3.0e-09 66.2 57 64.9
Cc06_g11750 Coffea canephora HOM05D000606 ORTHO05D002249 3.0e-09 66.2 68 55.9
Migut.J00670 Erythranthe guttata HOM05D000606 ORTHO05D034971 3.0e-09 66.2 52 63.5
Migut.L01528 Erythranthe guttata HOM05D000606 ORTHO05D002249 3.0e-09 66.2 52 63.5
Gohir.D05G033400 Gossypium hirsutum HOM05D000606 ORTHO05D002249 3.0e-09 66.2 56 64.3
Solyc12g009020.2 Solanum lycopersicum HOM05D000606 ORTHO05D002249 3.0e-09 66.2 50 66.0
Sopen12g003950 Solanum pennellii HOM05D000606 ORTHO05D002249 3.0e-09 66.2 50 66.0
PGSC0003DMG400000273 Solanum tuberosum HOM05D000606 ORTHO05D002249 3.0e-09 66.2 50 66.0
Sabra18G0047400 Salix brachista HOM05D000606 ORTHO05D002249 5.2e-09 65.5 54 64.8
TAR623G0534 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.2e-09 65.5 137 30.7
CAN.G1583.10 Capsicum annuum HOM05D000606 ORTHO05D002249 6.8e-09 65.1 50 64.0
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 6.8e-09 65.1 135 28.9
Actinidia25233 Actinidia chinensis HOM05D000606 ORTHO05D002249 8.8e-09 64.7 53 60.4
Gohir.A06G074200 Gossypium hirsutum HOM05D000606 ORTHO05D002249 8.8e-09 64.7 58 58.6
HanXRQChr12g0354521 Helianthus annuus HOM05D000606 ORTHO05D002249 8.8e-09 64.7 53 62.3
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 8.8e-09 64.7 146 28.1
Duzib168G0241 Durio zibethinus HOM05D000606 ORTHO05D002249 1.5e-08 63.9 54 64.8
Aqoxy7G04017 Aquilegia oxysepala HOM05D002258 ORTHO05D002249 2.0e-08 63.5 55 63.6
ECA234G0695 Erigeron canadensis HOM05D000606 ORTHO05D002249 2.0e-08 63.5 55 65.5
Nn8g38765 Nelumbo nucifera HOM05D000606 ORTHO05D002249 2.0e-08 63.5 66 50.0
Prupe.7G204700 Prunus persica HOM05D000606 ORTHO05D002249 2.0e-08 63.5 52 61.5
TWI34G1899 Tripterygium wilfordii HOM05D000606 ORTHO05D002249 2.6e-08 63.2 56 57.1
TAR626G1448 Trochodendron aralioides HOM05D000606 ORTHO05D002249 2.6e-08 63.2 55 61.8
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.6e-08 63.2 148 33.1
Lsat_1_v5_gn_5_143381 Lactuca sativa HOM05D000606 ORTHO05D002249 3.4e-08 62.8 55 63.6
MD02G1084700 Malus domestica HOM05D000606 ORTHO05D002249 3.4e-08 62.8 52 61.5
MD15G1212100 Malus domestica HOM05D000606 ORTHO05D002249 3.4e-08 62.8 52 61.5
Thecc.09G083300 Theobroma cacao HOM05D000101 ORTHO05D002249 3.4e-08 62.8 58 56.9
Ciclev10008579m.g Citrus clementina HOM05D000606 ORTHO05D002249 4.4e-08 62.4 55 61.8
TAR374G1072 Trochodendron aralioides HOM05D001201 ORTHO05D001100 4.4e-08 62.4 118 30.5
TAR413G0007 Trochodendron aralioides HOM05D000606 ORTHO05D002249 4.4e-08 62.4 50 62.0
QL02p061836 Quercus lobata HOM05D000606 ORTHO05D002249 5.7e-08 62.0 53 60.4
TAR625G0459 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.7e-08 62.0 129 28.7
Manes.16G099100 Manihot esculenta HOM05D000606 ORTHO05D002249 7.5e-08 61.6 47 68.1
PGR142G0336 Punica granatum HOM05D000606 ORTHO05D002249 7.5e-08 61.6 52 63.5
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.5e-08 61.6 149 32.9
QL04p025547 Quercus lobata HOM05D001903 ORTHO05D001847 9.8e-08 61.2 89 40.4
TPR.G18098 Trifolium pratense HOM05D000606 ORTHO05D002249 9.8e-08 61.2 51 56.9
Actinidia39699 Actinidia chinensis HOM05D000606 ORTHO05D002249 1.3e-07 60.8 53 58.5
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 1.3e-07 60.8 134 26.9
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.3e-07 60.8 127 30.7
HanXRQChr10g0319531 Helianthus annuus HOM05D000606 ORTHO05D002249 1.3e-07 60.8 55 58.2
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.3e-07 60.8 126 31.7
SGA_v2.0_scaffold23G10045 Striga asiatica HOM05D000606 ORTHO05D002249 1.3e-07 60.8 52 59.6
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-07 60.5 112 32.1
Nitab4.5_0000999g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-07 60.5 138 29.0
Nitab4.5_0001078g0120 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.7e-07 60.5 127 30.7
THA.LOC104817763 Tarenaya hassleriana HOM05D000606 ORTHO05D002249 1.7e-07 60.5 49 55.1
arahy.Tifrunner.gnm1.ann1.CXU7YK Arachis hypogaea HOM05D010482 ORTHO05D000385 2.2e-07 60.1 111 32.4
Gohir.A07G013100 Gossypium hirsutum HOM05D000606 ORTHO05D002249 2.2e-07 60.1 75 48.0
Sabra06G0115700 Salix brachista HOM05D000606 ORTHO05D002249 2.2e-07 60.1 49 63.3
SalBow8G2569 Salvia bowleyana HOM05D014977 ORTHO05D013333 2.2e-07 60.1 109 33.9
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 2.2e-07 60.1 127 29.1
arahy.Tifrunner.gnm1.ann1.5MEJ54 Arachis hypogaea HOM05D010482 ORTHO05D000385 2.8e-07 59.7 97 35.1
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 2.8e-07 59.7 129 28.7
TPR.G9468 Trifolium pratense HOM05D000606 ORTHO05D002249 2.8e-07 59.7 55 61.8
PSO210G5580 Papaver somniferum HOM05D000606 ORTHO05D002249 3.7e-07 59.3 60 51.7
SalBow6G2770 Salvia bowleyana HOM05D000606 ORTHO05D002249 3.7e-07 59.3 58 51.7
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.8e-07 58.9 138 28.3
FAN23G1803 Fragaria x ananassa HOM05D000606 ORTHO05D002249 6.3e-07 58.5 49 61.2
FAN26G1651 Fragaria x ananassa HOM05D000606 ORTHO05D002249 6.3e-07 58.5 49 61.2
FAN26G2279 Fragaria x ananassa HOM05D000606 ORTHO05D002249 6.3e-07 58.5 49 61.2
Psat1g131480 Pisum sativum HOM05D000606 ORTHO05D002249 6.3e-07 58.5 54 53.7
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.3e-07 58.2 124 31.5
Aa31LG2G20730 Aethionema arabicum HOM05D000606 ORTHO05D002249 1.1e-06 57.8 54 57.4
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 1.1e-06 57.8 97 33.0
Lj4g0011656 Lotus japonicus HOM05D000606 ORTHO05D002249 1.1e-06 57.8 46 60.9
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 1.1e-06 57.8 135 28.9
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 1.1e-06 57.8 108 32.4
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 1.1e-06 57.8 133 27.8
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.1e-06 57.8 108 33.3
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 1.4e-06 57.4 121 30.6
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.4e-06 57.4 129 29.5
Dinv42349 Davidia involucrata HOM05D000606 ORTHO05D002249 1.4e-06 57.4 50 68.0
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-06 57.4 115 27.8
Medtr4g125800 Medicago truncatula HOM05D000606 ORTHO05D002249 1.4e-06 57.4 55 58.2
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.4e-06 57.4 128 28.1
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 1.8e-06 57.0 112 30.4
Ca_13139_v3 Cicer arietinum L. HOM05D000606 ORTHO05D002249 1.8e-06 57.0 54 55.6
CsaV3_1G040690 Cucumis sativus L. HOM05D000606 ORTHO05D002249 1.8e-06 57.0 49 59.2
Nn6g35554 Nelumbo nucifera HOM05D000606 ORTHO05D034971 1.8e-06 57.0 50 56.0
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.8e-06 57.0 134 26.1
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 1.8e-06 57.0 145 27.6
THA.LOC104811755 Tarenaya hassleriana HOM05D000606 ORTHO05D002249 1.8e-06 57.0 59 47.5
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 2.4e-06 56.6 116 31.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.4e-06 56.6 126 28.6
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 2.4e-06 56.6 114 32.5
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 2.4e-06 56.6 112 32.1
Medtr2g040510 Medicago truncatula HOM05D000606 ORTHO05D002249 2.4e-06 56.6 54 53.7
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.4e-06 56.6 119 29.4
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-06 56.6 116 34.5
GSVIVG01015155001 Vitis vinifera HOM05D000606 ORTHO05D002249 2.4e-06 56.6 48 58.3
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 3.1e-06 56.2 112 29.5
Dinv04435 Davidia involucrata HOM05D001309 ORTHO05D013539 3.1e-06 56.2 117 35.0
FAN28G1541 Fragaria x ananassa HOM05D000606 ORTHO05D002249 3.1e-06 56.2 49 61.2
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.1e-06 56.2 134 23.9
TWI32G0436 Tripterygium wilfordii HOM05D000606 ORTHO05D002249 3.1e-06 56.2 58 56.9
A01p08350 Brassica napus HOM05D000606 ORTHO05D002249 4.1e-06 55.8 55 58.2
C01p09390 Brassica napus HOM05D000606 ORTHO05D002249 4.1e-06 55.8 55 58.2
ClCG03G015350 Citrullus lanatus HOM05D000606 ORTHO05D002249 4.1e-06 55.8 49 57.1
Gohir.D07G012900 Gossypium hirsutum HOM05D000606 ORTHO05D002249 4.1e-06 55.8 57 56.1
Gorai.001G013600 Gossypium raimondii HOM05D000606 ORTHO05D002249 4.1e-06 55.8 57 56.1
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.1e-06 55.8 115 26.1
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.1e-06 55.8 154 26.6
Nitab4.5_0001988g0060 Nicotiana tabacum HOM05D009290 ORTHO05D009597 4.1e-06 55.8 124 30.6
PSO210G7333 Papaver somniferum HOM05D000606 ORTHO05D002249 4.1e-06 55.8 60 48.3
Phvul.003G134100 Phaseolus vulgaris HOM05D000606 ORTHO05D002249 4.1e-06 55.8 55 58.2
SGA_v2.0_scaffold192G40635 Striga asiatica HOM05D000606 ORTHO05D002249 4.1e-06 55.8 68 44.1
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-06 55.8 135 26.7
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 4.1e-06 55.8 135 26.7
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-06 55.8 135 26.7
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-06 55.8 129 32.6
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-06 55.8 129 26.4
MELO3C015497.2 Cucumis melo HOM05D000606 ORTHO05D002249 5.4e-06 55.5 49 57.1
Glyma.13G106900 Glycine max HOM05D000606 ORTHO05D002249 5.4e-06 55.5 55 58.2
Glyma.17G052400 Glycine max HOM05D000606 ORTHO05D002249 5.4e-06 55.5 55 58.2
Lj6g0001338 Lotus japonicus HOM05D000606 ORTHO05D002249 5.4e-06 55.5 54 51.9
Psat4g016480 Pisum sativum HOM05D000606 ORTHO05D002249 5.4e-06 55.5 45 62.2
RcHm_v2.0_Chr2g0094061 Rosa chinensis HOM05D000606 ORTHO05D002249 5.4e-06 55.5 49 59.2
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 5.4e-06 55.5 135 26.7
arahy.Tifrunner.gnm1.ann1.U7U33W Arachis hypogaea HOM05D010482 ORTHO05D000385 7.0e-06 55.1 122 30.3
EL10Ac8g19161 Beta vulgaris HOM05D000606 ORTHO05D002249 7.0e-06 55.1 46 65.2
Carub.0007s1488 Capsella rubella HOM05D000606 ORTHO05D002249 7.0e-06 55.1 46 56.5
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 7.0e-06 55.1 119 29.4
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.0e-06 55.1 115 27.8
SalBow6G0449 Salvia bowleyana HOM05D014977 ORTHO05D013333 7.0e-06 55.1 102 35.3
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.0e-06 55.1 120 28.3
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 7.0e-06 55.1 126 30.2
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.1e-06 54.7 97 28.9
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 9.1e-06 54.7 122 27.9


User provided reference genes

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