Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 5.5e-245 850.5 420 100.0
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 1.9e-160 569.7 370 83.8
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 7.1e-160 567.8 393 77.9
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 6.2e-140 501.5 367 74.7
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 1.7e-57 227.6 372 42.7
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 7.3e-56 222.2 414 40.3
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 4.4e-53 213.0 412 39.1
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 2.4e-51 207.2 420 39.5
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 3.5e-50 203.4 383 40.2
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 1.5e-48 198.0 358 40.8
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 1.9e-48 197.6 395 38.5
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 4.3e-48 196.4 386 38.9
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 7.3e-48 195.7 413 38.7
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 3.6e-47 193.4 412 36.9
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 8.9e-46 188.7 376 38.0
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 7.5e-45 185.7 362 38.7
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 7.5e-45 185.7 395 37.5
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 3.7e-44 183.3 465 33.3
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 8.3e-44 182.2 372 37.4
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 2.4e-43 180.6 376 37.5
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 2.4e-43 180.6 390 36.9
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 3.5e-42 176.8 416 35.3
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 1.7e-41 174.5 422 34.4
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 3.9e-41 173.3 426 35.2
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 5.1e-41 172.9 360 37.2
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 4.3e-40 169.9 393 34.6
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.8e-39 167.2 379 35.4
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 4.7e-39 166.4 404 35.6
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.2e-39 166.0 378 36.5
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.2e-39 166.0 378 36.5
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 1.4e-38 164.9 416 34.6
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 1.8e-38 164.5 310 39.0
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 1.8e-38 164.5 411 32.4
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 3.1e-38 163.7 403 35.0
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 3.1e-38 163.7 341 38.1
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 6.8e-38 162.5 392 34.2
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 1.7e-36 157.9 465 30.8
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 6.4e-36 156.0 367 35.4
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.4e-36 156.0 382 35.1
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 1.1e-35 155.2 435 30.8
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 4.2e-35 153.3 404 33.7
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 9.2e-35 152.1 398 32.2
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 1.6e-34 151.4 372 33.6
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 2.7e-34 150.6 309 36.9
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 1.0e-33 148.7 315 34.3
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 1.7e-33 147.9 409 32.3
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 1.7e-33 147.9 231 43.3
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 2.5e-32 144.1 180 47.2
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 5.6e-32 142.9 327 33.3
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 9.6e-32 142.1 248 41.1
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 3.6e-31 140.2 409 33.0
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 1.1e-30 138.7 356 33.1
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 1.8e-30 137.9 307 32.6
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 6.9e-30 136.0 387 31.8
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 9.0e-30 135.6 387 32.3
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 9.0e-30 135.6 374 33.7
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 3.4e-29 133.7 422 31.5
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 4.4e-29 133.3 345 33.3
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 7.6e-29 132.5 298 36.9
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 9.9e-29 132.1 291 36.4
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 1.3e-28 131.7 293 32.8
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 1.7e-28 131.3 359 31.5
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 3.8e-28 130.2 461 30.4
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 6.4e-28 129.4 400 29.2
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 1.4e-27 128.3 370 31.4
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 3.2e-27 127.1 303 33.7
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 2.7e-26 124.0 385 30.4
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.0e-26 122.9 378 32.3
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 1.6e-23 114.8 395 28.4
MD16G1175700 Malus domestica HOM05D007369 ORTHO05D009369 5.3e-22 109.8 100 57.0
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 6.9e-22 109.4 282 30.9
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 3.4e-21 107.1 154 40.3
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 4.5e-21 106.7 366 28.7
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 2.2e-20 104.4 461 28.0
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 2.2e-20 104.4 367 30.5
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 8.4e-20 102.4 152 42.8
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 4.2e-19 100.1 269 30.5
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 3.5e-18 97.1 324 29.0
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 1.1e-16 92.0 320 31.9
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 2.8e-15 87.4 150 34.7
Hund24911 Selenicereus undatus HOM05D007369 ORTHO05D009369 3.1e-14 84.0 367 27.2
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 6.9e-14 82.8 165 35.8
Lsat_1_v5_gn_5_50560 Lactuca sativa HOM05D007369 ORTHO05D009369 1.2e-13 82.0 72 58.3
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 4.9e-12 76.6 286 30.8
Zm00001eb410560 Zea mays HOM05D007369 ORTHO05D009369 2.7e-10 70.9 275 27.3
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 3.9e-09 67.0 148 34.5
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 2.5e-08 64.3 170 34.7
Lalb_Chr20g0118171 Lupinus albus HOM05D007369 ORTHO05D009369 4.3e-08 63.5 56 53.6
MD16G1175500 Malus domestica HOM05D007369 ORTHO05D009369 1.6e-07 61.6 121 35.5
PGSC0003DMG401010654 Solanum tuberosum HOM05D007369 ORTHO05D009369 8.2e-07 59.3 51 54.9


User provided reference genes

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