Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.5e-90 334.3 175 100.0
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 5.4e-53 211.5 130 84.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 6.5e-51 204.5 130 80.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 9.4e-50 200.7 130 82.3
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.2e-44 183.7 135 70.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 6.1e-41 171.4 138 65.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 8.9e-40 167.5 128 66.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-39 167.2 128 66.4
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.0e-39 166.4 128 66.4
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.4e-39 165.2 128 66.4
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.4e-39 165.2 126 65.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 9.8e-39 164.1 126 69.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.3e-38 163.7 126 69.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.7e-38 163.3 127 67.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.7e-38 163.3 127 65.4
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.9e-38 162.5 128 64.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.7e-38 162.2 128 65.6
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.7e-38 162.2 138 65.2
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.9e-38 161.8 128 65.6
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.4e-38 161.4 128 64.8
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 8.3e-38 161.0 132 62.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 8.3e-38 161.0 127 65.4
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.1e-37 160.6 128 64.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.8e-37 159.8 121 66.9
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.8e-37 159.8 137 62.0
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.2e-37 159.1 128 64.8
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.2e-37 159.1 84 94.0
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.1e-37 158.7 133 66.2
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.1e-37 158.7 127 66.1
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 9.2e-37 157.5 125 65.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.2e-37 157.5 139 62.6
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 9.2e-37 157.5 149 59.7
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.2e-36 157.1 147 58.5
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.0e-36 156.4 128 62.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.7e-36 156.0 126 65.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.5e-36 155.6 144 56.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.6e-36 155.2 128 62.5
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.9e-36 154.8 127 63.8
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 5.9e-36 154.8 125 64.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.9e-36 154.8 128 62.5
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.9e-36 154.8 130 63.1
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.9e-36 154.8 127 63.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 7.8e-36 154.5 126 65.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.3e-35 153.7 127 65.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.3e-35 153.7 126 64.3
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.7e-35 153.3 123 65.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-35 153.3 126 64.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 2.3e-35 152.9 133 60.9
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.9e-35 152.5 128 63.3
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.0e-35 151.8 123 63.4
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 5.0e-35 151.8 124 63.7
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 6.6e-35 151.4 127 62.2
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 8.6e-35 151.0 128 62.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.6e-35 151.0 124 63.7
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.1e-34 150.6 135 60.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-34 150.6 128 62.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.9e-34 149.8 122 63.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.9e-34 149.8 129 61.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.5e-34 149.4 122 62.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.5e-34 149.4 124 64.5
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 5.6e-34 148.3 124 60.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 7.3e-34 147.9 124 61.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-33 147.1 132 62.9
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-33 146.7 132 62.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-33 146.7 132 62.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 8.0e-33 144.4 122 58.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.0e-33 144.4 122 58.2
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 8.0e-33 144.4 128 59.4
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.0e-32 144.1 125 59.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.0e-32 144.1 122 57.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.0e-32 144.1 122 56.6
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.8e-32 143.3 123 61.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.8e-32 143.3 128 57.0
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.8e-32 143.3 122 57.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.3e-32 142.9 122 56.6
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.3e-32 142.9 127 57.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.1e-32 142.5 128 57.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.0e-32 142.1 129 55.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.0e-32 142.1 129 58.1
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.0e-32 142.1 127 58.3
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 5.2e-32 141.7 129 58.9
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 5.2e-32 141.7 127 60.6
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.8e-32 141.4 127 57.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 8.9e-32 141.0 128 55.5
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.2e-31 140.6 140 57.1
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.2e-31 140.6 127 57.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.5e-31 140.2 124 59.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-31 140.2 130 58.5
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.5e-31 140.2 132 59.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.5e-31 140.2 128 56.2
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-31 139.8 129 59.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.6e-31 139.4 129 57.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.4e-31 138.7 129 55.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.4e-31 138.7 127 59.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.8e-31 138.3 129 56.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 7.5e-31 137.9 133 54.9
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 7.5e-31 137.9 127 59.1
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 9.8e-31 137.5 129 58.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.7e-30 136.7 130 56.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.9e-30 136.0 129 58.1
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 2.9e-30 136.0 127 58.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 3.7e-30 135.6 129 58.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 6.4e-30 134.8 130 56.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.4e-30 134.8 130 56.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 6.4e-30 134.8 130 56.2
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.4e-30 134.8 129 55.8
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 8.3e-30 134.4 130 56.2
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 8.3e-30 134.4 130 56.2
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.9e-29 133.3 100 59.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 7.0e-29 131.3 125 56.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.2e-28 130.6 126 51.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.6e-28 130.2 123 57.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-27 127.5 129 53.5
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.0e-27 127.5 129 53.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.3e-27 126.3 129 53.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.0e-27 125.9 101 59.4
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 9.5e-26 120.9 98 59.2
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.2e-25 120.6 102 58.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-25 120.6 122 57.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-25 120.2 131 52.7
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 8.1e-25 117.9 91 62.6
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 8.1e-25 117.9 128 53.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.8e-23 110.9 107 52.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.7e-22 110.2 98 55.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.2e-22 109.8 150 50.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.4e-22 108.2 99 59.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 6.4e-22 108.2 86 54.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.4e-21 107.1 99 59.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.1e-21 105.5 99 59.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.4e-21 105.1 119 47.1
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-20 102.4 112 50.9
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.0e-20 101.7 90 51.1
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 6.0e-20 101.7 128 50.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.0e-19 100.9 73 63.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.7e-19 100.1 83 56.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.0e-19 99.4 64 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.1e-19 98.6 122 41.0
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.5e-18 96.3 92 50.0
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.7e-17 92.0 84 48.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-16 90.9 124 44.4
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.6e-15 84.7 83 59.0
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.7e-14 83.6 73 54.8
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.9e-14 82.8 74 52.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.4e-13 80.5 144 39.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.2e-12 77.4 82 54.9
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.7e-12 76.3 91 41.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 4.6e-12 75.5 84 44.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-08 63.5 67 56.7
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.4e-08 63.2 65 41.5
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.4e-08 63.2 67 44.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 4.0e-08 62.4 65 58.5
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.2e-08 62.0 57 59.6
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.8e-08 61.6 63 57.1
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 8.9e-08 61.2 57 59.6
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.9e-08 61.2 59 61.0
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.9e-08 61.2 59 61.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.9e-08 61.2 66 56.1
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.2e-07 60.8 70 42.9
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-07 60.8 67 56.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 2.0e-07 60.1 92 34.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-06 57.4 67 52.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.7e-06 57.0 39 69.2
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 6.4e-06 55.1 52 46.2


User provided reference genes

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