Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.1e-84 314.7 160 100.0
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 8.9e-71 270.4 160 86.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.3e-69 266.5 160 83.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.3e-55 219.2 164 70.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 8.3e-53 210.7 168 65.5
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.4e-52 209.9 162 64.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.4e-52 209.9 168 64.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.4e-52 209.1 165 65.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.1e-52 208.4 159 67.3
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 5.4e-52 208.0 165 63.6
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.2e-51 206.8 159 67.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.2e-51 206.8 165 67.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.5e-51 205.3 166 62.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 3.9e-50 201.8 167 61.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.6e-50 201.1 130 82.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 8.6e-50 200.7 167 61.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.1e-49 200.3 160 65.0
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.5e-49 199.9 168 61.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.9e-49 199.5 169 62.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.5e-49 199.1 166 63.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.3e-49 198.7 165 62.4
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.3e-49 198.7 166 63.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.3e-49 198.7 165 62.4
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.3e-49 198.4 168 60.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.6e-49 198.0 159 64.8
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.3e-49 197.6 162 63.6
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.3e-49 197.6 160 63.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.5e-49 197.2 167 60.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.2e-48 196.8 167 60.5
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-48 196.1 169 61.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.1e-48 196.1 168 61.3
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 2.1e-48 196.1 167 60.5
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.8e-48 195.7 168 60.7
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.8e-48 195.7 163 60.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.6e-48 195.3 165 61.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 8.1e-48 194.1 168 61.3
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.2e-47 191.4 168 58.3
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.2e-47 191.4 160 60.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.2e-47 191.4 172 61.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.2e-47 191.4 172 56.4
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.8e-47 191.0 165 60.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.8e-47 191.0 168 56.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 8.9e-47 190.7 165 58.2
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.0e-46 189.5 161 61.5
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.4e-46 188.3 165 61.8
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.8e-46 188.0 166 56.6
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 5.8e-46 188.0 162 61.1
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.6e-46 187.6 162 59.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.7e-45 186.4 162 60.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.9e-45 185.7 161 59.6
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 4.9e-45 184.9 161 62.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.4e-45 184.5 172 60.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.4e-45 184.5 164 59.8
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 8.4e-45 184.1 172 59.9
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-44 183.3 172 59.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-44 183.0 162 61.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.4e-44 182.6 158 58.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 2.4e-44 182.6 162 59.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 2.4e-44 182.6 161 59.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.4e-44 182.6 164 60.4
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-44 182.6 164 59.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-44 182.6 163 59.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.2e-44 182.2 157 61.8
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.4e-44 181.4 171 57.9
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.2e-44 180.6 167 55.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.1e-43 179.5 156 60.3
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.0e-43 177.9 169 57.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 7.8e-43 177.6 163 57.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.8e-43 177.6 158 58.2
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 7.8e-43 177.6 163 57.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 7.8e-43 177.6 158 59.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.0e-42 177.2 168 56.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.3e-42 176.8 162 56.8
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.3e-42 176.8 167 57.5
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.7e-42 176.4 167 58.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.7e-42 176.4 167 55.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.7e-42 176.4 166 55.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.3e-42 176.0 158 59.5
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.3e-42 176.0 158 59.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.0e-42 175.6 167 57.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.9e-42 175.3 169 55.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.9e-42 175.3 166 59.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.7e-42 174.1 158 58.2
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.1e-41 173.7 168 55.4
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.1e-41 173.7 162 57.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.5e-41 173.3 161 57.8
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.5e-41 173.3 168 54.8
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.3e-41 172.2 168 54.8
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.3e-41 172.2 168 54.8
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.6e-41 171.4 168 54.8
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.6e-41 171.4 157 55.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.3e-41 171.0 152 57.9
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 9.6e-41 170.6 161 57.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-40 169.9 168 54.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.6e-40 169.9 168 54.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-40 169.5 168 54.2
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 4.7e-40 168.3 152 60.5
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.7e-40 168.3 163 54.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.1e-40 167.5 169 55.0
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.4e-39 166.8 152 60.5
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-39 166.0 167 52.7
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.0e-39 165.2 167 52.1
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.2e-38 163.7 163 56.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.0e-38 162.9 162 56.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 9.9e-38 160.6 165 52.7
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 6.4e-37 157.9 161 52.2
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 7.1e-36 154.5 125 59.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.1e-35 152.9 165 47.9
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-35 152.5 166 50.6
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.3e-34 150.2 155 54.2
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.7e-34 149.8 168 51.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-34 149.8 169 49.7
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.7e-34 149.8 169 49.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.1e-34 148.3 131 61.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 5.1e-34 148.3 172 52.9
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.9e-33 146.4 127 57.5
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.9e-33 146.4 121 62.0
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.1e-32 142.9 84 89.3
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.1e-31 140.6 163 49.1
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.5e-30 135.2 126 57.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.8e-30 134.8 135 53.3
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.8e-30 134.8 126 61.1
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.2e-29 132.9 157 51.6
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 6.4e-29 131.3 113 58.4
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 9.3e-28 127.5 172 44.2
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-27 127.1 131 51.9
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-27 127.1 168 45.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.5e-27 125.6 136 47.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 6.0e-27 124.8 158 40.5
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.0e-26 124.0 170 45.3
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.0e-26 122.5 170 45.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.7e-26 120.9 104 56.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.5e-25 120.2 97 59.8
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 2.1e-24 116.3 172 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.0e-22 109.8 165 38.8
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.6e-22 109.4 155 39.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 7.6e-22 107.8 119 47.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.1e-20 104.0 92 59.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-20 103.6 149 44.3
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.5e-20 101.7 150 38.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.9e-17 93.2 173 30.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.1e-16 89.7 69 63.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 8.2e-16 87.8 143 40.6
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-15 86.3 81 50.6
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-12 77.4 162 34.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 5.5e-12 75.1 82 52.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.7e-11 72.8 114 39.5
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.3e-10 69.7 81 51.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 6.7e-10 68.2 60 63.3
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.3e-09 65.9 61 59.0
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.3e-09 65.9 63 50.8
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.7e-09 65.1 53 64.2
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-08 63.9 60 58.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.2e-08 63.2 61 57.4
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.7e-08 62.4 57 57.9
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.3e-08 61.6 64 54.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-07 60.5 73 49.3
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-07 60.5 73 49.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.9e-06 55.1 86 43.0


User provided reference genes

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