Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031552.2 Cucumis melo HOM05D000005 ORTHO05D168212 2.1e-45 185.3 91 100.0
CsaV3_2G004940 Cucumis sativus L. HOM05D000005 ORTHO05D000012 1.1e-22 109.8 147 46.3
CsaV3_2G005270 Cucumis sativus L. HOM05D000005 ORTHO05D014188 6.3e-21 104.0 147 46.3
MELO3C004262.2 Cucumis melo HOM05D000005 ORTHO05D014188 9.0e-20 100.1 147 44.9
MELO3C031543.2 Cucumis melo HOM05D000005 ORTHO05D000294 1.7e-18 95.9 138 44.9
Sed0000589 Sechium edule HOM05D000005 ORTHO05D000012 1.2e-16 89.7 147 40.1
Sed0001473 Sechium edule HOM05D000005 ORTHO05D000012 1.2e-16 89.7 147 40.1
Sed0008531 Sechium edule HOM05D000005 ORTHO05D000012 1.2e-16 89.7 147 40.1
MELO3C004309.2 Cucumis melo HOM05D000005 ORTHO05D000012 2.7e-16 88.6 147 39.5
CsaV3_2G005210 Cucumis sativus L. HOM05D000005 ORTHO05D000012 3.6e-16 88.2 147 38.8
CsaV3_2G004890 Cucumis sativus L. HOM05D000005 ORTHO05D000012 7.9e-16 87.0 147 38.8
CsaV3_2G004870 Cucumis sativus L. HOM05D000005 ORTHO05D000012 1.9e-14 82.4 147 36.7
MELO3C004289.2 Cucumis melo HOM05D000005 ORTHO05D000012 6.3e-13 77.4 147 37.4
CsaV3_5G025850 Cucumis sativus L. HOM05D000005 ORTHO05D000012 9.1e-12 73.6 149 34.9
ClCG02G016100 Citrullus lanatus HOM05D000005 ORTHO05D000012 9.4e-09 63.5 149 32.2
RcHm_v2.0_Chr5g0064871 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-08 62.8 60 53.3
MELO3C004301.2 Cucumis melo HOM05D000005 ORTHO05D014188 2.1e-08 62.4 145 33.1
MELO3C004259.2 Cucumis melo HOM05D000005 ORTHO05D014188 4.7e-08 61.2 145 33.1
QL03p025185 Quercus lobata HOM05D000005 ORTHO05D000012 4.7e-08 61.2 67 49.3
RcHm_v2.0_Chr5g0064561 Rosa chinensis HOM05D000005 ORTHO05D000012 4.7e-08 61.2 60 51.7
RcHm_v2.0_Chr3g0481981 Rosa chinensis HOM05D000005 ORTHO05D000012 7.9e-08 60.5 60 51.7
RcHm_v2.0_Chr5g0064701 Rosa chinensis HOM05D000005 ORTHO05D000012 7.9e-08 60.5 60 51.7
CsaV3_2G005050 Cucumis sativus L. HOM05D000005 ORTHO05D000012 1.0e-07 60.1 149 30.2
RcHm_v2.0_Chr4g0413991 Rosa chinensis HOM05D000005 ORTHO05D000012 1.0e-07 60.1 147 30.6
RcHm_v2.0_Chr7g0216131 Rosa chinensis HOM05D000005 ORTHO05D000294 1.0e-07 60.1 140 32.9
FvH4_1g11570 Fragaria vesca HOM05D000005 ORTHO05D000012 3.0e-07 58.5 60 51.7
FAN05G1815 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-07 58.5 61 49.2
QL03p005139 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-07 58.5 57 54.4
RcHm_v2.0_Chr4g0411931 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-07 58.5 59 52.5
RcHm_v2.0_Chr4g0413961 Rosa chinensis HOM05D000005 ORTHO05D000294 3.0e-07 58.5 140 32.1
FvH4_6g04250 Fragaria vesca HOM05D000005 ORTHO05D000012 5.1e-07 57.8 60 48.3
FAN02G3145 Fragaria x ananassa HOM05D000005 ORTHO05D000294 5.1e-07 57.8 61 49.2
FAN05G5750 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.1e-07 57.8 61 47.5
Gohir.A11G282539 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.1e-07 57.8 59 49.2
MD05G1022400 Malus domestica HOM05D000005 ORTHO05D000012 5.1e-07 57.8 60 50.0
QL11p020288 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-07 57.8 67 44.8
RcHm_v2.0_Chr3g0482041 Rosa chinensis HOM05D000005 ORTHO05D000012 5.1e-07 57.8 59 49.2
FAN02G1613 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.7e-07 57.4 60 48.3
FAN05G0011 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.7e-07 57.4 61 47.5
FAN05G1394 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.7e-07 57.4 60 48.3
CiPaw.05G247400 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.8e-07 57.0 149 30.2
MELO3C004292.2 Cucumis melo HOM05D000005 ORTHO05D000012 8.8e-07 57.0 145 29.7
FvH4_6g05610 Fragaria vesca HOM05D000005 ORTHO05D000012 8.8e-07 57.0 60 48.3
FvH4_6g49490 Fragaria vesca HOM05D000005 ORTHO05D024891 8.8e-07 57.0 60 51.7
QL03p006103 Quercus lobata HOM05D000005 ORTHO05D000294 8.8e-07 57.0 57 52.6
QL03p006134 Quercus lobata HOM05D000005 ORTHO05D000012 8.8e-07 57.0 57 52.6
RcHm_v2.0_Chr4g0413891 Rosa chinensis HOM05D000005 ORTHO05D000012 8.8e-07 57.0 150 30.0
FvH4_6g04730 Fragaria vesca HOM05D000005 ORTHO05D000012 1.1e-06 56.6 60 48.3
FAN09G2091 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-06 56.6 60 48.3
FAN09G4901 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-06 56.6 60 48.3
FAN19G1333 Fragaria x ananassa HOM05D000005 ORTHO05D000402 1.1e-06 56.6 60 48.3
Lj2g0025475 Lotus japonicus HOM05D000005 ORTHO05D000294 1.1e-06 56.6 60 46.7
PGSC0003DMG401020581 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.1e-06 56.6 113 36.3
Ciclev10030396m.g Citrus clementina HOM05D000005 ORTHO05D000294 2.0e-06 55.8 124 31.5
CsaV3_2G005060 Cucumis sativus L. HOM05D000005 ORTHO05D000012 2.0e-06 55.8 147 27.9
CsaV3_2G005290 Cucumis sativus L. HOM05D000005 ORTHO05D000294 2.0e-06 55.8 135 33.3
FvH4_3g08681 Fragaria vesca HOM05D000005 ORTHO05D000012 2.0e-06 55.8 150 31.3
FAN11G1874 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.0e-06 55.8 150 31.3
FAN14G2024 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.0e-06 55.8 60 46.7
Gohir.D11G312800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.0e-06 55.8 122 32.8
GSVIVG01001491001 Vitis vinifera HOM05D000005 ORTHO05D000012 2.0e-06 55.8 47 53.2
BcaNung07093 Brassica carinata HOM05D000005 ORTHO05D000012 2.6e-06 55.5 57 52.6
C08p32760 Brassica napus HOM05D000005 ORTHO05D000012 2.6e-06 55.5 57 52.6
BolC8t50887H Brassica oleracea HOM05D000005 ORTHO05D000012 2.6e-06 55.5 57 52.6
Ciclev10018573m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.6e-06 55.5 56 48.2
Ciclev10023975m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.6e-06 55.5 60 48.3
FvH4_6g04350 Fragaria vesca HOM05D000005 ORTHO05D000012 2.6e-06 55.5 61 47.5
FAN05G4047 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.6e-06 55.5 61 47.5
FAN14G4126 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.6e-06 55.5 61 47.5
Manes.13G002100 Manihot esculenta HOM05D000005 ORTHO05D000012 2.6e-06 55.5 59 54.2
Gohir.A01G064400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.3e-06 55.1 59 52.5
Phvul.010G055100 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 3.3e-06 55.1 87 36.8
Prupe.8G021700 Prunus persica HOM05D000005 ORTHO05D000012 3.3e-06 55.1 60 46.7
FAN23G1655 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.4e-06 54.7 60 46.7
Glyma.16G006400 Glycine max HOM05D000005 ORTHO05D000012 4.4e-06 54.7 57 47.4
Gohir.D11G295850 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.4e-06 54.7 59 47.5
Manes.18G112080 Manihot esculenta HOM05D000005 ORTHO05D000012 4.4e-06 54.7 59 45.8
Ciclev10018189m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.7e-06 54.3 60 45.0
Ciclev10023913m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.7e-06 54.3 55 45.5
Ciclev10023985m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.7e-06 54.3 69 42.0
FvH4_1g11580 Fragaria vesca HOM05D000005 ORTHO05D000012 5.7e-06 54.3 60 48.3
FAN08G0846 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-06 54.3 59 50.8
FAN08G1990 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-06 54.3 59 50.8
FAN08G2688 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-06 54.3 59 50.8
FAN19G2664 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-06 54.3 60 48.3
Potri.007G143300 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.7e-06 54.3 47 51.1
Prupe.1G018700 Prunus persica HOM05D000005 ORTHO05D000012 5.7e-06 54.3 59 52.5
QL02p014810 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 54.3 47 55.3
QL03p004732 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 54.3 47 55.3
QL09p000406 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 54.3 46 52.2
QL09p026102 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 54.3 47 55.3
Sopen07g028980 Solanum pennellii HOM05D000005 ORTHO05D000012 5.7e-06 54.3 48 56.2
Ciclev10018611m.g Citrus clementina HOM05D000005 ORTHO05D000012 7.4e-06 53.9 60 46.7
FAN16G0432 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.4e-06 53.9 59 49.2
Potri.007G142600 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.4e-06 53.9 47 51.1
QL03p004829 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-06 53.9 47 53.2
QL03p004867 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-06 53.9 47 53.2
PGSC0003DMG400017317 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.4e-06 53.9 48 56.2
Ciclev10023454m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.7e-06 53.5 61 47.5
Ciclev10024534m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.7e-06 53.5 61 44.3
Duzib212G0136 Durio zibethinus HOM05D000005 ORTHO05D000012 9.7e-06 53.5 50 54.0
Duzib212G0801 Durio zibethinus HOM05D000005 ORTHO05D000012 9.7e-06 53.5 50 54.0
Duzib212G0923 Durio zibethinus HOM05D000005 ORTHO05D000012 9.7e-06 53.5 50 54.0
FAN08G0486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.7e-06 53.5 47 59.6
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.7e-06 53.5 60 48.3
Gohir.A11G283865 Gossypium hirsutum HOM05D000005 ORTHO05D000294 9.7e-06 53.5 59 45.8
Gohir.D11G296916 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.7e-06 53.5 67 41.8
Lsat_1_v5_gn_8_49880 Lactuca sativa HOM05D000005 ORTHO05D000012 9.7e-06 53.5 57 43.9
MD03G1083600 Malus domestica HOM05D000005 ORTHO05D013913 9.7e-06 53.5 99 35.4
QL06p019462 Quercus lobata HOM05D000005 ORTHO05D000294 9.7e-06 53.5 57 47.4
QL10p024950 Quercus lobata HOM05D000005 ORTHO05D000012 9.7e-06 53.5 149 29.5


User provided reference genes

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