Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031298.2 Cucumis melo HOM05D002109 ORTHO05D002149 1.8e-122 442.6 226 100.0
MELO3C021055.2 Cucumis melo HOM05D002109 ORTHO05D002149 4.7e-17 92.4 50 94.0
ClCG09G008840 Citrullus lanatus HOM05D002109 ORTHO05D002149 1.8e-16 90.5 50 92.0
CsaV3_7G026030 Cucumis sativus L. HOM05D002109 ORTHO05D002149 1.2e-15 87.8 50 88.0
Sed0010614 Sechium edule HOM05D002109 ORTHO05D002149 2.2e-14 83.6 48 89.6
Cpa.g.sc17.96 Carica papaya HOM05D002109 ORTHO05D002149 5.4e-13 79.0 50 78.0
Manes.14G122400 Manihot esculenta HOM05D002109 ORTHO05D002149 3.5e-12 76.3 50 74.0
Haze_05772 Corylus avellana HOM05D002109 ORTHO05D002149 7.7e-12 75.1 50 74.0
CiPaw.09G116000 Carya illinoinensis HOM05D002109 ORTHO05D002149 1.3e-11 74.3 50 74.0
Duzib132G1017 Durio zibethinus HOM05D002109 ORTHO05D002149 1.3e-11 74.3 50 70.0
Ciclev10016636m.g Citrus clementina HOM05D002109 ORTHO05D002149 2.2e-11 73.6 48 77.1
Cfa000833 Carpinus fangiana HOM05D002109 ORTHO05D002149 2.9e-11 73.2 50 72.0
COL.COLO4_17683 Corchorus olitorius HOM05D002109 ORTHO05D002149 2.9e-11 73.2 50 70.0
Gohir.D12G044600 Gossypium hirsutum HOM05D002109 ORTHO05D002149 2.9e-11 73.2 50 68.0
Gorai.008G046900 Gossypium raimondii HOM05D002109 ORTHO05D002149 2.9e-11 73.2 50 68.0
Gohir.A12G045533 Gossypium hirsutum HOM05D002109 ORTHO05D002149 3.8e-11 72.8 50 68.0
Ah.14g087480 Amaranthus hybridus HOM05D002109 ORTHO05D002149 5.0e-11 72.4 50 66.0
Sc17g0004660 Simmondsia chinensis HOM05D002109 ORTHO05D002149 6.5e-11 72.0 50 70.0
Thecc.02G012400 Theobroma cacao HOM05D002109 ORTHO05D002149 1.1e-10 71.2 50 68.0
TWI09G1384 Tripterygium wilfordii HOM05D002109 ORTHO05D002149 1.5e-10 70.9 60 60.0
TAR626G0561 Trochodendron aralioides HOM05D002109 ORTHO05D002149 1.9e-10 70.5 50 70.0
CANSAT35G1726 Cannabis sativa HOM05D002109 ORTHO05D002149 3.2e-10 69.7 51 68.6
MD05G1274400 Malus domestica HOM05D002109 ORTHO05D002149 3.2e-10 69.7 50 68.0
Sabra06G0036400 Salix brachista HOM05D002109 ORTHO05D002149 3.2e-10 69.7 50 66.0
Sabra16G0058000 Salix brachista HOM05D002109 ORTHO05D002149 4.2e-10 69.3 50 66.0
Nn3g20248 Nelumbo nucifera HOM05D002109 ORTHO05D002149 5.5e-10 68.9 50 66.0
QL05p053263 Quercus lobata HOM05D002109 ORTHO05D002149 5.5e-10 68.9 51 70.6
TAR624G0261 Trochodendron aralioides HOM05D002109 ORTHO05D002149 5.5e-10 68.9 50 66.0
Potri.016G055300 Populus trichocarpa HOM05D002109 ORTHO05D002149 7.2e-10 68.6 50 64.0
Sp4g16970 Schrenkiella parvula HOM05D002109 ORTHO05D002149 7.2e-10 68.6 50 68.0
Thhalv10017082m.g Eutrema salsugineum HOM05D002109 ORTHO05D002149 9.4e-10 68.2 50 68.0
EL10Ac8g20232 Beta vulgaris HOM05D002109 ORTHO05D002149 1.2e-09 67.8 53 60.4
GSVIVG01021615001 Vitis vinifera HOM05D002109 ORTHO05D002149 1.2e-09 67.8 50 62.0
Aqoxy1G01644 Aquilegia oxysepala HOM05D002109 ORTHO05D002149 1.6e-09 67.4 50 64.0
Dinv15923 Davidia involucrata HOM05D002109 ORTHO05D002149 1.6e-09 67.4 54 66.7
Potri.006G051800 Populus trichocarpa HOM05D002109 ORTHO05D002149 1.6e-09 67.4 50 64.0
Prupe.4G089300 Prunus persica HOM05D002109 ORTHO05D002149 1.6e-09 67.4 50 64.0
RcHm_v2.0_Chr5g0015711 Rosa chinensis HOM05D002109 ORTHO05D002149 1.6e-09 67.4 50 66.0
Ah.09g234060 Amaranthus hybridus HOM05D002109 ORTHO05D002149 2.1e-09 67.0 52 59.6
FvH4_3g09960 Fragaria vesca HOM05D002109 ORTHO05D002149 2.1e-09 67.0 50 64.0
FAN21G2409 Fragaria x ananassa HOM05D002109 ORTHO05D002149 2.1e-09 67.0 50 64.0
FAN25G2973 Fragaria x ananassa HOM05D002109 ORTHO05D002149 2.1e-09 67.0 50 64.0
C03p22440 Brassica napus HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 66.0
Carub.0004s1638 Capsella rubella HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 66.0
AUR62012827 Chenopodium quinoa HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 62.0
FAN11G2577 Fragaria x ananassa HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 64.0
Hund21141 Selenicereus undatus HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 62.0
THA.LOC104814320 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 2.7e-09 66.6 50 62.0
TWI73G0873 Tripterygium wilfordii HOM05D002109 ORTHO05D002149 2.7e-09 66.6 52 63.5
BolC3t14627H Brassica oleracea HOM05D002109 ORTHO05D002149 3.6e-09 66.2 50 66.0
Aa31LG10G6640 Aethionema arabicum HOM05D002109 ORTHO05D002149 4.7e-09 65.9 50 64.0
BcaC01g05782 Brassica carinata HOM05D002109 ORTHO05D002149 4.7e-09 65.9 50 66.0
Eucgr.G00858 Eucalyptus grandis HOM05D002109 ORTHO05D002149 4.7e-09 65.9 50 64.0
MBI02_g11455_MAGBIO Magnolia biondii HOM05D002109 ORTHO05D002149 4.7e-09 65.9 50 66.0
PSO675G0854 Papaver somniferum HOM05D002109 ORTHO05D002149 4.7e-09 65.9 50 66.0
A03p19240 Brassica napus HOM05D002109 ORTHO05D002149 6.1e-09 65.5 50 64.0
BraA03t11179Z Brassica rapa HOM05D002109 ORTHO05D002149 6.1e-09 65.5 50 64.0
PSO541G4444 Papaver somniferum HOM05D002109 ORTHO05D002149 6.1e-09 65.5 50 66.0
Atru.chr10.893 Acer truncatum HOM05D002109 ORTHO05D002149 8.0e-09 65.1 52 63.5
ATR0686G237 Amborella trichopoda HOM05D002109 ORTHO05D002149 8.0e-09 65.1 50 60.0
HanXRQChr13g0400261 Helianthus annuus HOM05D002109 ORTHO05D002149 1.0e-08 64.7 52 61.5
MD10G1254100 Malus domestica HOM05D002109 ORTHO05D002149 1.0e-08 64.7 50 64.0
AL4G30680 Arabidopsis lyrata HOM05D002109 ORTHO05D002149 1.4e-08 64.3 50 64.0
AT2G34690 Arabidopsis thaliana HOM05D002109 ORTHO05D002149 1.4e-08 64.3 50 64.0
THA.LOC104812684 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 1.4e-08 64.3 50 60.0
CARHR128820 Cardamine hirsuta HOM05D002109 ORTHO05D002149 1.8e-08 63.9 50 62.0
Hma1.2p1_0333F.1_g128360 Hydrangea macrophylla HOM05D002109 ORTHO05D002149 2.3e-08 63.5 55 56.4
Psat1g168600 Pisum sativum HOM05D002109 ORTHO05D002149 2.3e-08 63.5 52 71.2
PGR031G1251 Punica granatum HOM05D002109 ORTHO05D002149 2.3e-08 63.5 53 62.3
ATR0165G009 Amborella trichopoda HOM05D002109 ORTHO05D002149 3.0e-08 63.2 50 58.0
Dinv15917 Davidia involucrata HOM05D002109 ORTHO05D002149 4.0e-08 62.8 54 61.1
VMungo0540G1859 Vigna mungo HOM05D002109 ORTHO05D002149 5.2e-08 62.4 49 63.3
Lsat_1_v5_gn_9_80980 Lactuca sativa HOM05D002109 ORTHO05D002149 8.8e-08 61.6 53 58.5
CSS0038948 Camellia sinensis var. sinensis HOM05D002109 ORTHO05D002149 1.2e-07 61.2 52 59.6
Cc09_g08080 Coffea canephora HOM05D002109 ORTHO05D002149 1.2e-07 61.2 54 57.4
Eucgr.E02492 Eucalyptus grandis HOM05D002109 ORTHO05D002149 1.2e-07 61.2 52 61.5
Nitab4.5_0001181g0030 Nicotiana tabacum HOM05D002109 ORTHO05D002149 2.6e-07 60.1 64 51.6
Solyc02g070250.4 Solanum lycopersicum HOM05D002109 ORTHO05D002149 2.6e-07 60.1 73 49.3
CAN.G660.44 Capsicum annuum HOM05D002109 ORTHO05D002149 4.4e-07 59.3 54 55.6
ECA236G4401 Erigeron canadensis HOM05D002109 ORTHO05D002149 5.7e-07 58.9 50 60.0
HPP92_017712 Vanilla planifolia HOM05D002109 ORTHO05D002149 5.7e-07 58.9 50 58.0
Glyma.09G022100 Glycine max HOM05D002109 ORTHO05D002149 7.5e-07 58.5 51 56.9
Nitab4.5_0012442g0010 Nicotiana tabacum HOM05D002109 ORTHO05D002149 7.5e-07 58.5 54 55.6
Peaxi162Scf00195g00120 Petunia axillaris HOM05D002109 ORTHO05D002149 7.5e-07 58.5 51 56.9
Lj2C328G2 Lonicera japonica HOM05D002109 ORTHO05D002149 9.8e-07 58.2 60 51.7
Phvul.006G130300 Phaseolus vulgaris HOM05D002109 ORTHO05D002149 9.8e-07 58.2 49 59.2
Sopen02g019340 Solanum pennellii HOM05D002109 ORTHO05D002149 9.8e-07 58.2 64 50.0
PGSC0003DMG400021103 Solanum tuberosum HOM05D002109 ORTHO05D002149 9.8e-07 58.2 54 55.6
Migut.G00584 Erythranthe guttata HOM05D002109 ORTHO05D002149 1.3e-06 57.8 52 55.8
Lalb_Chr20g0119981 Lupinus albus HOM05D002109 ORTHO05D002149 1.7e-06 57.4 50 60.0
SGA_v2.0_scaffold4G02001 Striga asiatica HOM05D002109 ORTHO05D002149 1.7e-06 57.4 52 53.8
Lj6g0010433 Lotus japonicus HOM05D002109 ORTHO05D002149 2.2e-06 57.0 49 59.2
DCAR_027862 Daucus carota HOM05D002109 ORTHO05D002149 2.8e-06 56.6 62 46.8
MSTRG.4189 Avicennia marina HOM05D002109 ORTHO05D002149 3.7e-06 56.2 54 51.9
Oeu007548.1 Olea europaea HOM05D002109 ORTHO05D002149 3.7e-06 56.2 56 51.8
Lalb_Chr15g0088711 Lupinus albus HOM05D002109 ORTHO05D002149 4.9e-06 55.8 50 60.0
Rhsim02G0160300 Rhododendron simsii HOM05D002109 ORTHO05D002149 6.3e-06 55.5 59 52.5
Ca_00800_v3 Cicer arietinum L. HOM05D002109 ORTHO05D002149 8.3e-06 55.1 52 61.5
Medtr2g029520 Medicago truncatula HOM05D002109 ORTHO05D002149 8.3e-06 55.1 52 63.5


User provided reference genes

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