Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.7e-76 287.7 140 100.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.7e-63 245.4 155 79.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.5e-58 229.6 155 71.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.8e-51 206.1 157 65.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 2.0e-50 202.6 157 65.0
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.4e-50 201.8 157 64.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 4.4e-50 201.4 157 64.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.4e-50 201.4 157 63.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 4.4e-50 201.4 157 63.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.4e-50 201.4 157 63.1
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 7.6e-50 200.7 157 65.0
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 9.9e-50 200.3 157 63.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.9e-49 198.0 156 64.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 8.4e-49 197.2 159 62.3
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.1e-48 196.8 157 63.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.9e-48 196.1 157 61.8
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.2e-48 195.3 157 62.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.1e-48 194.9 157 62.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.1e-48 194.9 157 61.8
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 7.1e-48 194.1 155 61.3
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.2e-48 193.7 155 62.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 9.2e-48 193.7 157 63.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-47 193.4 158 61.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.6e-47 193.0 157 61.1
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.6e-47 193.0 157 63.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.6e-47 193.0 156 61.5
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.6e-47 193.0 157 61.8
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.1e-47 192.6 157 61.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.1e-47 192.6 157 61.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.5e-47 191.8 155 60.0
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 4.6e-47 191.4 157 59.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 4.6e-47 191.4 158 62.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 6.0e-47 191.0 157 61.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 7.8e-47 190.7 157 60.5
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 7.8e-47 190.7 156 60.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 7.8e-47 190.7 155 59.4
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.0e-46 190.3 157 61.1
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.3e-46 189.9 157 59.2
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.3e-46 189.9 155 59.4
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.7e-46 189.5 157 60.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.0e-46 188.7 157 61.8
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.9e-46 188.3 165 58.2
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.1e-46 188.0 157 60.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.1e-46 188.0 157 60.5
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 6.6e-46 187.6 158 59.5
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 6.6e-46 187.6 157 59.9
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.6e-46 187.2 155 60.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 8.6e-46 187.2 160 60.0
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 8.6e-46 187.2 157 56.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.1e-45 186.8 157 60.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-45 186.0 157 60.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.9e-45 186.0 156 61.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.5e-45 185.7 156 58.3
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.3e-45 184.9 157 59.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 4.3e-45 184.9 157 61.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.6e-45 184.5 156 59.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 5.6e-45 184.5 155 60.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 7.3e-45 184.1 157 59.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.6e-45 183.7 155 60.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.6e-45 183.7 155 60.0
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-44 181.4 155 58.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 8.1e-44 180.6 155 58.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 8.1e-44 180.6 155 57.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.1e-44 180.6 155 60.0
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-43 180.3 157 58.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-43 179.9 157 58.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-43 179.1 156 59.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.1e-43 178.7 155 57.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.0e-43 178.3 154 59.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.9e-43 177.6 157 58.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.2e-42 176.8 122 74.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-42 176.8 156 58.3
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.0e-42 176.0 155 56.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.4e-42 175.3 155 58.1
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 7.6e-42 174.1 154 57.1
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-41 172.6 156 57.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 6.4e-41 171.0 154 54.5
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 6.4e-41 171.0 155 56.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.4e-41 170.6 157 56.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 8.4e-41 170.6 155 54.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.1e-40 170.2 146 58.9
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-40 169.5 157 57.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.9e-40 169.5 154 53.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.4e-40 169.1 157 53.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 4.2e-40 168.3 157 54.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.2e-40 168.3 157 54.1
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.7e-39 165.6 155 54.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-38 163.7 157 52.2
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-38 163.7 157 52.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-38 163.7 157 52.2
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.0e-38 163.7 157 52.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.0e-38 163.7 157 52.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.3e-38 162.5 146 59.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-38 162.2 157 52.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.9e-38 161.8 157 52.2
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 6.6e-38 161.0 157 52.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.1e-37 160.2 157 51.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.5e-37 159.8 157 51.6
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-37 159.5 158 51.3
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.5e-37 159.1 157 53.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 4.3e-37 158.3 158 51.3
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.6e-37 157.9 157 51.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 9.6e-37 157.1 157 51.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.8e-36 155.6 158 50.0
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.8e-36 155.6 157 51.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.1e-36 154.1 147 55.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-35 153.3 158 49.4
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.4e-35 152.5 157 52.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.4e-35 152.5 158 48.7
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.4e-35 152.5 155 48.4
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 4.9e-33 144.8 157 50.3
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.4e-33 144.1 157 51.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 8.4e-33 144.1 157 49.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.2e-31 140.2 147 48.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.6e-31 139.8 71 91.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.7e-31 139.0 157 43.9
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.5e-31 138.7 142 52.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 6.0e-31 137.9 158 48.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.9e-31 137.5 155 46.5
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.8e-30 136.3 170 46.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 4.3e-29 131.7 157 42.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.6e-29 131.3 125 56.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-27 126.3 151 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.9e-25 119.0 159 40.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.8e-22 109.8 166 36.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.1e-22 108.2 167 35.3
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 5.6e-21 104.8 73 67.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-20 103.2 111 52.3
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.1e-20 102.8 104 53.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 8.1e-20 100.9 139 43.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 8.4e-17 90.9 71 56.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.9e-16 89.7 66 63.6
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 7.1e-16 87.8 170 28.8
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.0e-14 84.0 63 66.7
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.0e-14 82.4 168 32.1
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-13 79.3 56 66.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.1e-11 72.4 64 56.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-10 70.5 78 47.4
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.5e-09 64.3 37 73.0
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-07 59.7 31 74.2


User provided reference genes

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