Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.2e-76 287.0 144 100.0
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.1e-67 260.0 144 90.3
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.3e-60 234.2 143 83.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.4e-54 216.5 143 76.2
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.8e-54 216.1 144 77.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.7e-52 208.4 142 74.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 3.6e-39 165.2 140 58.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.2e-36 156.0 140 54.3
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 8.3e-36 154.1 143 57.3
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 5.4e-35 151.4 143 52.4
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 3.5e-34 148.7 134 56.0
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.5e-34 148.7 143 55.2
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 7.8e-34 147.5 143 55.2
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.3e-33 146.7 141 53.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.7e-33 146.4 141 54.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 2.3e-33 146.0 143 52.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 6.6e-33 144.4 141 51.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.6e-33 144.4 143 53.1
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 8.6e-33 144.1 143 53.1
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.3e-32 141.7 142 51.4
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 9.5e-32 140.6 135 53.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.2e-31 140.2 139 50.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.6e-31 139.8 145 50.3
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.1e-31 139.4 143 50.3
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 2.1e-31 139.4 143 50.3
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.1e-31 137.5 138 49.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.4e-30 136.0 142 49.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.0e-30 135.2 137 48.2
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.0e-30 135.2 141 49.6
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.0e-30 135.2 141 51.1
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 6.8e-30 134.4 139 49.6
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.2e-29 133.7 135 49.6
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.4e-29 132.1 143 46.2
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.4e-29 132.1 143 48.3
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.4e-29 131.7 143 49.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 4.4e-29 131.7 144 50.7
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 7.6e-29 131.0 144 46.5
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 9.9e-29 130.6 143 46.2
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.3e-28 130.2 143 46.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.2e-28 129.4 143 49.0
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.8e-28 128.6 136 53.7
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.8e-28 128.6 143 48.3
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 4.9e-28 128.3 143 45.5
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 8.4e-28 127.5 135 48.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 8.4e-28 127.5 143 47.6
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 8.4e-28 127.5 143 48.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 8.4e-28 127.5 135 48.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 8.4e-28 127.5 136 47.8
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-27 126.7 143 46.9
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.4e-27 125.9 136 50.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.2e-27 125.6 143 45.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 4.1e-27 125.2 143 46.2
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.1e-27 124.4 143 45.5
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.2e-27 124.0 136 52.9
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.2e-26 123.6 145 46.9
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.2e-26 123.6 142 45.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.2e-26 123.6 143 43.4
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.6e-26 123.2 139 48.2
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.6e-26 123.2 143 46.2
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.6e-26 123.2 136 52.2
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.1e-26 122.9 144 45.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.7e-26 122.5 143 43.4
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.7e-26 122.5 136 52.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.7e-26 122.5 136 52.2
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.7e-26 122.5 141 46.1
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.7e-26 122.5 135 44.4
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.7e-26 122.5 143 44.8
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.5e-26 122.1 143 44.8
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 4.6e-26 121.7 143 44.8
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.6e-26 121.7 143 44.1
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.6e-26 121.7 143 44.8
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 4.6e-26 121.7 143 44.8
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 6.0e-26 121.3 143 44.8
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 7.8e-26 120.9 141 46.1
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 7.8e-26 120.9 142 47.9
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.0e-25 120.6 141 47.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.0e-25 120.6 141 47.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.3e-25 120.2 143 42.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-25 120.2 143 44.1
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.3e-25 120.2 137 48.9
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.3e-25 120.2 142 45.1
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.3e-25 119.4 135 49.6
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 3.0e-25 119.0 143 44.1
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 3.0e-25 119.0 143 44.1
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.0e-25 119.0 143 44.8
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.1e-25 118.2 136 49.3
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 8.7e-25 117.5 143 43.4
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.1e-24 117.1 143 42.7
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-24 117.1 136 48.5
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.1e-24 117.1 144 44.4
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.5e-24 115.9 142 44.4
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 3.3e-24 115.5 141 48.2
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.3e-24 115.5 143 48.3
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 3.3e-24 115.5 141 44.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 4.3e-24 115.2 142 44.4
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 7.3e-24 114.4 142 44.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 7.3e-24 114.4 143 42.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.3e-24 114.4 143 41.3
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.6e-24 114.0 143 47.6
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 9.6e-24 114.0 143 44.1
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.6e-23 113.2 143 47.6
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.6e-23 113.2 142 43.0
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.8e-23 112.5 143 43.4
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-23 112.5 139 45.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.7e-23 111.7 125 46.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.8e-22 109.8 135 44.4
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.4e-22 109.4 139 43.9
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.1e-22 109.0 133 44.4
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.0e-21 106.3 139 41.7
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.4e-21 105.5 143 39.2
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 3.4e-21 105.5 142 41.5
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-21 105.5 143 45.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.4e-21 105.1 138 44.2
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 5.8e-21 104.8 160 38.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 4.9e-20 101.7 142 40.1
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 9.3e-19 97.4 139 40.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 9.3e-19 97.4 127 43.3
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.7e-18 95.9 144 41.0
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-16 90.5 143 37.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-16 90.1 140 38.6
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.5e-16 90.1 171 30.4
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.3e-16 88.6 135 37.8
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.1e-14 84.0 139 38.1
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-14 84.0 106 42.5
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.4e-14 83.6 86 48.8
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 9.0e-14 80.9 141 36.9
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.4e-12 74.3 143 37.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 2.4e-11 72.8 141 32.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.6e-10 68.6 122 32.8
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.5e-08 62.8 141 28.4
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 7.4e-08 61.2 142 31.7


User provided reference genes

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