Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031102.2 Cucumis melo HOM05D002370 ORTHO05D015007 8.8e-63 243.4 121 100.0
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.0e-47 193.4 119 84.9
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.0e-47 193.4 119 84.9
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.0e-47 193.4 119 84.9
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 3.0e-47 191.8 119 84.0
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 5.2e-47 191.0 119 84.0
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 1.5e-46 189.5 119 83.2
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.5e-46 189.5 119 83.2
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.5e-46 189.5 119 83.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.5e-46 189.5 119 83.2
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.5e-46 189.5 119 83.2
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.0e-46 189.1 119 83.2
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.6e-46 188.7 119 82.4
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 2.6e-46 188.7 119 82.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.6e-46 188.7 119 83.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 3.4e-46 188.3 119 83.2
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 3.4e-46 188.3 119 82.4
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 4.4e-46 188.0 120 82.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 5.7e-46 187.6 119 82.4
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 5.7e-46 187.6 119 82.4
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 7.5e-46 187.2 119 81.5
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 7.5e-46 187.2 119 81.5
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 9.8e-46 186.8 119 81.5
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 9.8e-46 186.8 119 80.7
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.3e-45 186.4 119 82.4
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.3e-45 186.4 119 81.5
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.3e-45 186.4 119 81.5
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.3e-45 186.4 119 81.5
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.7e-45 186.0 119 81.5
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.7e-45 186.0 119 81.5
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.7e-45 186.0 119 81.5
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.7e-45 186.0 119 80.7
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 80.7
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 80.7
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 81.5
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 81.5
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 80.7
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.2e-45 185.7 119 80.7
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.8e-45 185.3 119 80.7
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.8e-45 185.3 119 81.5
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 81.5
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 82.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 79.8
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 79.8
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 80.7
SalBow6G7047 Salvia bowleyana HOM05D002370 ORTHO05D003878 3.7e-45 184.9 119 79.8
Cpa.g.sc520.2 Carica papaya HOM05D002370 ORTHO05D003878 4.8e-45 184.5 119 80.7
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 4.8e-45 184.5 115 83.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 4.8e-45 184.5 119 80.7
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.8e-45 184.5 119 81.5
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 4.8e-45 184.5 119 81.5
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 4.8e-45 184.5 119 80.7
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 81.5
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 79.8
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 79.8
arahy.Tifrunner.gnm1.ann1.UC42H8 Arachis hypogaea HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 79.8
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 79.0
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 8.3e-45 183.7 119 79.0
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.1e-44 183.3 119 79.8
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 1.4e-44 183.0 119 79.0
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.4e-44 183.0 115 82.6
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.8e-44 182.6 119 79.8
Hma1.2p1_0661F.1_g197990 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.8e-44 182.6 119 79.8
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.8e-44 182.6 119 79.8
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.4e-44 182.2 119 79.0
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 3.1e-44 181.8 119 79.8
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 4.1e-44 181.4 119 78.2
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 5.4e-44 181.0 119 78.2
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 5.4e-44 181.0 119 78.2
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 7.0e-44 180.6 119 79.0
TPR.G8287 Trifolium pratense HOM05D002370 ORTHO05D003878 7.0e-44 180.6 115 81.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 9.1e-44 180.3 119 78.2
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 9.1e-44 180.3 119 79.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 1.2e-43 179.9 119 77.3
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.2e-43 179.9 115 80.9
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 1.6e-43 179.5 119 78.2
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.6e-43 179.5 119 79.0
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 2.0e-43 179.1 115 80.9
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.0e-43 179.1 119 78.2
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 2.7e-43 178.7 119 77.3
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 2.7e-43 178.7 119 77.3
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.7e-43 178.7 115 80.9
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 4.5e-43 177.9 119 77.3
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 5.9e-43 177.6 119 79.0
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.0e-42 176.8 119 75.6
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.0e-42 176.8 119 75.6
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.0e-42 176.8 119 75.6
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 1.0e-42 176.8 119 75.6
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 1.0e-42 176.8 119 75.6
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.3e-42 176.4 119 77.3
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.7e-42 176.0 119 77.3
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.7e-42 176.0 119 75.6
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 2.2e-42 175.6 119 78.2
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.2e-42 175.6 118 78.8
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.2e-42 175.6 115 80.0
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 2.9e-42 175.3 119 76.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.8e-42 174.9 119 74.8
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 3.8e-42 174.9 119 76.5
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 76.5
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 5.0e-42 174.5 119 74.8
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 6.5e-42 174.1 119 74.8
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 6.5e-42 174.1 119 75.6
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 3.2e-41 171.8 119 76.5
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 3.2e-41 171.8 119 76.5
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 9.5e-41 170.2 119 75.6
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.7e-40 167.9 119 74.8
Eucgr.I02504 Eucalyptus grandis HOM05D002370 ORTHO05D003878 8.0e-40 167.2 120 71.7
SEGI_21899 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.0e-39 166.8 119 74.8
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.0e-39 166.8 119 74.8
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.3e-39 165.6 115 77.4
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 2.3e-39 165.6 119 73.9
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.7e-37 159.5 119 71.4
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.8e-37 158.7 148 57.4
SEGI_07133 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.7e-37 158.3 119 71.4
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 7.8e-35 150.6 101 77.2
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.0e-34 150.2 119 66.4
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.1e-33 146.7 119 67.2
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 2.5e-33 145.6 115 68.7
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 4.3e-33 144.8 119 67.2
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 1.0e-31 140.2 119 64.7
Hund06505 Selenicereus undatus HOM05D002370 ORTHO05D003878 5.2e-31 137.9 96 77.1
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 9.8e-30 133.7 115 58.3
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 1.7e-29 132.9 115 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.1e-28 130.2 119 61.3
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 4.6e-27 124.8 70 87.1
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 8.6e-26 120.6 115 56.5
FAN05G1179 Fragaria x ananassa HOM05D002370 ORTHO05D015007 4.6e-19 98.2 51 94.1
FAN25G3390 Fragaria x ananassa HOM05D002370 ORTHO05D015007 4.6e-19 98.2 51 94.1
Psat3g066680 Pisum sativum HOM05D002370 ORTHO05D032982 7.8e-19 97.4 61 80.3
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 1.1e-17 93.6 115 40.9
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 3.7e-13 78.6 114 41.2
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 6.0e-11 71.2 37 94.6
Psat4g228960 Pisum sativum HOM05D002370 ORTHO05D003878 1.0e-10 70.5 35 97.1
Atru.chr5.2258 Acer truncatum HOM05D002370 ORTHO05D003878 1.3e-10 70.1 37 97.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.3e-10 70.1 38 89.5
Psat4g136640 Pisum sativum HOM05D000188 ORTHO05D003976 1.1e-07 60.5 36 75.0
Psat4g136680 Pisum sativum HOM05D000188 ORTHO05D003976 1.1e-07 60.5 36 75.0
MELO3C016143.2 Cucumis melo HOM05D002370 ORTHO05D003878 5.8e-06 54.7 34 82.4


User provided reference genes

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