Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 0.0e+00 1220.3 598 100.0
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 3.0e-204 715.7 615 65.4
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 6.7e-188 661.4 615 59.2
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 7.7e-176 621.3 540 60.9
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 7.4e-171 604.7 540 60.6
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 9.7e-171 604.4 538 59.5
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.7e-170 603.6 540 59.8
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 8.2e-170 601.3 540 59.4
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.6e-168 596.3 540 58.0
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 3.4e-168 595.9 538 58.2
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 5.9e-168 595.1 538 58.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 7.7e-168 594.7 540 58.7
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.0e-167 594.3 540 59.8
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.3e-167 594.0 540 58.0
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 2.9e-167 592.8 540 58.1
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 3.8e-167 592.4 539 58.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.0e-167 592.0 540 57.4
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.0e-167 592.0 540 58.7
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 8.5e-167 591.3 540 58.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.1e-166 590.9 536 59.0
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.4e-166 590.5 541 58.0
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.5e-166 589.7 540 57.8
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 5.5e-166 588.6 538 57.4
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.2e-165 587.4 538 57.8
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.6e-165 587.0 540 58.1
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.6e-165 587.0 536 57.5
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.6e-165 585.9 538 58.2
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.3e-164 583.2 541 57.5
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.0e-164 582.8 540 56.9
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.2e-164 582.0 540 57.0
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 8.8e-164 581.3 542 57.4
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 1.1e-163 580.9 540 57.4
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 3.3e-163 579.3 558 55.7
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.3e-163 579.3 540 56.7
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.3e-163 579.3 537 56.8
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.4e-163 578.9 540 56.5
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 5.7e-163 578.6 541 57.1
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 7.4e-163 578.2 540 56.3
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 7.4e-163 578.2 538 56.5
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 2.8e-162 576.2 536 57.8
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.3e-162 575.1 540 55.9
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 8.2e-162 574.7 539 57.1
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.4e-161 573.9 541 55.6
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.4e-161 573.9 539 56.6
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 3.1e-161 572.8 540 55.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 3.1e-161 572.8 540 56.3
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 4.1e-161 572.4 540 56.3
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 7.0e-161 571.6 538 56.1
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.0e-161 571.6 540 55.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 9.1e-161 571.2 537 57.7
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 9.1e-161 571.2 504 59.9
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.2e-160 570.9 540 56.3
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.6e-160 570.5 538 55.4
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.6e-160 570.5 540 55.0
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.6e-160 569.7 538 57.1
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.9e-159 566.2 536 56.0
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 2.9e-159 566.2 536 56.2
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 6.5e-159 565.1 536 56.0
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-158 564.3 536 55.8
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.1e-158 564.3 538 55.4
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.9e-158 563.5 539 56.2
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 4.2e-158 562.4 539 55.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.6e-157 559.3 504 58.1
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 4.7e-157 558.9 538 55.4
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 6.1e-157 558.5 536 55.4
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 8.0e-157 558.1 537 55.5
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 8.0e-157 558.1 540 57.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.0e-156 557.8 505 57.6
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.4e-156 557.4 507 58.2
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.8e-156 557.0 624 54.2
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 3.0e-156 556.2 511 57.9
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 5.2e-156 555.4 538 54.8
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 6.7e-156 555.1 545 55.2
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 8.8e-156 554.7 536 55.0
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 8.8e-156 554.7 540 55.2
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.1e-155 554.3 538 55.4
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.6e-155 553.1 507 57.8
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.3e-155 552.7 513 56.7
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.4e-155 552.4 508 58.1
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 5.7e-155 552.0 537 54.7
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.8e-154 549.7 540 54.6
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 8.2e-154 548.1 538 55.4
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.2e-152 544.3 538 53.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 4.5e-152 542.3 533 55.0
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.9e-152 542.0 540 54.3
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.3e-151 540.8 538 55.0
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 8.5e-151 538.1 548 55.3
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.5e-150 536.6 507 56.2
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 2.5e-150 536.6 537 53.1
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.7e-149 532.3 508 55.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 2.3e-148 530.0 556 53.4
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.5e-147 527.3 448 64.5
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.7e-147 525.4 508 55.3
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 4.2e-142 509.2 492 54.9
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.2e-140 502.3 551 49.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 6.8e-140 501.9 540 50.0
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.5e-139 498.4 535 49.7
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.3e-135 487.6 433 58.7
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 3.6e-133 479.6 479 53.9
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 4.0e-132 476.1 526 51.1
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 6.8e-124 448.7 521 49.1
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.6e-123 446.8 450 55.1
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 7.3e-118 428.7 549 45.0
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.2e-117 427.9 541 45.7
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.8e-117 426.8 539 43.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 8.1e-117 425.2 535 44.5
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.4e-116 424.5 540 44.8
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.1e-116 423.3 526 45.2
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.3e-110 402.9 538 43.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.3e-108 397.1 567 42.9
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.6e-104 382.9 506 43.3
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.3e-102 376.7 507 42.8
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.6e-96 357.8 314 61.1
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.6e-96 357.8 488 42.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.8e-93 347.1 291 62.2
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.8e-93 347.1 284 62.7
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 4.6e-88 329.7 327 53.2
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.9e-82 310.5 294 57.1
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.2e-72 278.5 420 37.6
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.9e-71 273.5 213 62.9
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.1e-71 273.1 211 64.9
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 3.4e-67 260.4 552 32.6
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 2.7e-64 250.8 586 31.2
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.3e-63 248.4 211 60.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.3e-62 243.4 195 63.6
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.7e-48 196.8 199 49.2
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.9e-47 193.7 203 50.2
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.5e-43 180.6 278 39.9
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 2.3e-39 167.9 107 70.1
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 4.7e-32 143.7 498 27.3
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.5e-30 138.7 123 52.8
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 5.4e-28 130.2 134 50.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 7.0e-28 129.8 129 54.3
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.2e-27 129.0 77 70.1
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.6e-24 118.6 135 48.9
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.4e-23 115.5 127 48.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.7e-21 108.6 62 74.2
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.7e-21 108.6 145 41.4
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.4e-20 103.6 109 55.0
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.0e-19 101.7 96 52.1
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.3e-15 88.2 112 43.8
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 5.2e-15 87.0 112 49.1
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.8e-14 82.8 70 55.7
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.8e-12 78.6 95 46.3
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 7.0e-12 76.6 103 44.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 9.2e-12 76.3 187 33.2
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.3e-09 67.4 67 53.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 6.2e-08 63.5 101 38.6
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.6e-06 58.2 35 71.4


User provided reference genes

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