Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.4e-71 272.7 129 100.0
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 7.0e-18 94.4 74 64.9
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 2.0e-17 92.8 76 63.2
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 3.5e-17 92.0 74 62.2
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 3.5e-17 92.0 74 63.5
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 4.6e-17 91.7 74 62.2
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 5.9e-17 91.3 67 67.2
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 5.9e-17 91.3 78 61.5
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 5.9e-17 91.3 73 64.4
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 1.0e-16 90.5 74 62.2
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.3e-16 90.1 78 59.0
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 1.7e-16 89.7 77 58.4
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 2.3e-16 89.4 77 55.8
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 3.0e-16 89.0 79 59.5
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 3.9e-16 88.6 80 55.0
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 3.9e-16 88.6 77 54.5
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 5.0e-16 88.2 77 59.7
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 5.0e-16 88.2 67 62.7
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 5.0e-16 88.2 78 60.3
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 6.6e-16 87.8 80 56.2
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 6.6e-16 87.8 67 62.7
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 6.6e-16 87.8 79 60.8
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.5e-15 86.7 74 62.2
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 1.5e-15 86.7 74 62.2
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 1.5e-15 86.7 60 66.7
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 1.5e-15 86.7 74 55.4
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.5e-15 86.7 60 68.3
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.3e-15 85.1 74 60.8
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 4.3e-15 85.1 58 69.0
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 4.3e-15 85.1 58 69.0
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 5.6e-15 84.7 76 55.3
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 5.6e-15 84.7 74 59.5
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 5.6e-15 84.7 74 56.8
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 7.3e-15 84.3 60 65.0
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 9.5e-15 84.0 60 65.0
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 9.5e-15 84.0 76 56.6
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 1.2e-14 83.6 72 59.7
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.6e-14 83.2 73 57.5
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 2.1e-14 82.8 78 56.4
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 2.8e-14 82.4 93 47.3
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 3.6e-14 82.0 60 63.3
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 4.7e-14 81.6 72 58.3
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 4.7e-14 81.6 73 58.9
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 6.2e-14 81.3 74 56.8
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 1.4e-13 80.1 58 65.5
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 1.8e-13 79.7 74 54.1
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.8e-13 79.7 74 54.1
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.8e-13 79.7 77 49.4
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 1.8e-13 79.7 73 53.4
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 2.3e-13 79.3 60 61.7
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 2.3e-13 79.3 58 65.5
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 3.1e-13 79.0 48 75.0
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 3.1e-13 79.0 72 58.3
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 6.8e-13 77.8 88 48.9
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.8e-13 77.8 77 53.2
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.8e-13 77.8 77 53.2
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 6.8e-13 77.8 74 54.1
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 6.8e-13 77.8 60 61.7
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 8.9e-13 77.4 67 55.2
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.2e-12 77.0 67 53.7
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 1.2e-12 77.0 67 53.7
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.5e-12 76.6 89 49.4
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 2.0e-12 76.3 58 65.5
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 2.6e-12 75.9 50 68.0
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 3.4e-12 75.5 74 51.4
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 3.4e-12 75.5 74 56.8
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 3.4e-12 75.5 74 55.4
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 4.4e-12 75.1 60 61.7
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 7.5e-12 74.3 56 62.5
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.3e-11 73.6 89 47.2
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 1.3e-11 73.6 74 55.4
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.7e-11 73.2 44 77.3
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 2.2e-11 72.8 73 52.1
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 2.9e-11 72.4 62 54.8
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 3.7e-11 72.0 70 54.3
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 6.4e-11 71.2 83 42.2
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 6.4e-11 71.2 80 52.5
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 6.4e-11 71.2 62 53.2
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 1.1e-10 70.5 73 47.9
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 9.2e-10 67.4 60 56.7
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 9.2e-10 67.4 60 56.7
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.2e-09 67.0 77 46.8
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 1.2e-09 67.0 77 46.8
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 2.7e-09 65.9 71 47.9
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 7.8e-09 64.3 77 45.5
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 5.0e-08 61.6 72 38.9
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 6.6e-08 61.2 69 49.3
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 6.6e-08 61.2 62 51.6
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 8.6e-08 60.8 93 37.6


User provided reference genes

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