Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 7.0e-221 770.4 411 100.0
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 6.5e-158 561.2 359 82.7
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 1.5e-151 540.0 411 76.9
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 3.0e-107 392.9 412 60.0
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.3e-97 360.9 411 56.2
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 9.0e-67 258.5 374 43.9
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.1e-61 241.5 347 42.9
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 3.6e-60 236.5 401 43.6
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.8e-57 226.5 343 43.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 5.5e-56 222.6 366 42.3
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 7.1e-56 222.2 398 43.0
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.6e-55 221.1 373 41.3
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 7.4e-53 212.2 361 41.8
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.7e-52 209.9 340 42.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.1e-51 208.4 307 45.3
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.4e-51 207.2 373 42.9
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 6.9e-51 205.7 342 41.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 9.0e-51 205.3 332 42.5
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 9.0e-51 205.3 370 40.3
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.8e-50 202.6 321 43.9
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 7.6e-50 202.2 375 40.5
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.3e-49 201.4 347 43.2
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.1e-48 198.4 388 39.4
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.9e-48 197.6 363 41.0
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 7.1e-48 195.7 350 40.3
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 7.1e-48 195.7 350 40.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.3e-46 191.4 406 39.4
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.5e-45 187.2 351 38.2
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.1e-44 184.1 317 41.6
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.8e-44 183.7 379 38.3
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.7e-44 183.3 323 41.2
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 4.8e-44 183.0 343 40.5
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.1e-43 180.3 335 39.1
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.1e-43 179.9 318 39.6
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.9e-43 179.1 328 40.2
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 1.2e-42 178.3 372 39.5
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 2.6e-42 177.2 354 40.1
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 4.5e-42 176.4 310 39.0
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 5.9e-42 176.0 357 38.1
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.9e-41 173.7 352 38.4
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 8.4e-41 172.2 379 36.7
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.9e-40 171.0 371 38.3
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.9e-40 171.0 439 35.1
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.5e-40 170.6 356 36.8
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.5e-40 169.5 390 37.4
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 9.3e-40 168.7 356 38.5
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-39 168.3 304 40.5
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.2e-39 168.3 390 37.2
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.1e-39 167.5 407 36.9
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 2.1e-39 167.5 264 45.5
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 3.5e-39 166.8 326 36.8
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.6e-39 166.4 358 37.2
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.8e-38 164.5 357 37.3
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 5.1e-38 162.9 308 39.6
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.1e-38 162.9 292 39.7
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.1e-37 161.8 364 37.9
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.5e-37 161.4 337 35.0
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.9e-37 161.0 363 37.5
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 4.3e-37 159.8 209 46.9
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.3e-37 159.8 209 46.9
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.3e-37 159.8 209 46.9
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 4.3e-37 159.8 361 37.4
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 5.7e-37 159.5 361 36.6
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 9.7e-37 158.7 354 36.4
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.3e-36 158.3 290 40.0
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.3e-36 158.3 309 40.1
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.3e-36 158.3 322 36.0
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.7e-36 156.8 361 35.5
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.7e-36 156.8 353 36.5
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 8.2e-36 155.6 353 36.0
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.1e-35 155.2 221 46.6
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.4e-35 154.8 318 36.8
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.8e-35 154.5 248 42.7
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 2.4e-35 154.1 360 35.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.1e-35 153.7 309 38.8
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 3.1e-35 153.7 309 39.2
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 4.1e-35 153.3 303 39.3
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.2e-34 151.8 304 37.8
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.5e-34 151.4 371 35.3
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.0e-33 148.7 207 45.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 2.9e-33 147.1 371 32.9
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.9e-33 147.1 350 35.4
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 5.0e-33 146.4 356 37.4
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 6.5e-33 146.0 335 37.0
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 3.2e-32 143.7 327 38.8
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.5e-32 142.9 340 36.2
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 9.4e-32 142.1 319 34.5
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.6e-31 141.4 311 36.3
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 3.6e-31 140.2 299 34.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 4.6e-31 139.8 337 33.5
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 7.9e-31 139.0 384 33.9
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-30 138.7 371 35.3
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-30 138.3 389 35.2
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 6.7e-30 136.0 324 33.0
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.5e-29 134.8 324 36.4
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.5e-29 134.8 332 36.4
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.3e-29 133.3 310 34.8
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 2.2e-28 131.0 395 35.2
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.8e-28 129.8 339 32.2
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.8e-27 127.9 316 37.3
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.3e-25 121.7 353 34.0
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 2.2e-25 120.9 274 38.3
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 2.9e-25 120.6 341 33.4
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 2.9e-25 120.6 302 33.1
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 5.0e-25 119.8 353 32.6
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.9e-24 117.9 330 31.2
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.9e-24 117.9 377 34.5
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.9e-24 117.9 357 33.1
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.3e-22 110.9 134 47.8
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.0e-22 110.5 313 32.6
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.9e-22 110.2 359 32.3
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 8.8e-22 109.0 381 32.0
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.5e-21 108.2 337 30.6
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.3e-20 105.1 215 38.1
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.3e-20 105.1 200 37.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.7e-20 104.8 352 32.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 5.3e-19 99.8 245 33.9
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 7.0e-19 99.4 182 36.3
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 9.1e-19 99.0 210 34.3
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 7.7e-18 95.9 94 55.3
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.5e-16 91.7 96 53.1
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.2e-16 90.1 234 34.2
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 7.2e-16 89.4 318 30.5
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 1.2e-15 88.6 94 55.3
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.6e-15 88.2 323 29.1
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 2.7e-15 87.4 232 35.8
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.8e-14 84.7 336 30.1
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 6.3e-12 76.3 89 50.6
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.0e-10 71.2 262 28.6
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 4.5e-10 70.1 381 27.6
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-09 68.2 90 48.9
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.5e-08 64.3 162 33.3
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.6e-07 61.6 167 31.7
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 1.8e-06 58.2 337 28.5
Hma1.2p1_3637F.1_g337120 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 5.2e-06 56.6 118 36.4
Haze_10420 Corylus avellana HOM05D002938 ORTHO05D002074 6.8e-06 56.2 131 35.1
Haze_10425 Corylus avellana HOM05D002938 ORTHO05D002074 6.8e-06 56.2 131 35.1
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 6.8e-06 56.2 250 27.2
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 8.8e-06 55.8 117 32.5


User provided reference genes

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