Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030851.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.2e-127 457.2 225 100.0
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.7e-48 194.9 100 94.0
MELO3C034976.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.5e-33 146.0 91 80.2
MELO3C001574.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-30 136.3 88 76.1
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 1.3e-27 127.5 95 55.8
MELO3C033907.2 Cucumis melo HOM05D009894 ORTHO05D013589 2.2e-27 126.7 66 90.9
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.5e-27 125.2 95 58.9
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.9e-26 123.6 103 53.4
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.5e-26 123.2 94 53.2
MELO3C028643.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-24 117.5 103 51.5
MELO3C034786.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-24 117.1 103 50.5
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.4e-23 111.7 93 49.5
MELO3C033140.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.4e-23 111.7 85 56.5
MELO3C034611.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.8e-22 109.8 81 58.0
MELO3C034305.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.7e-22 109.4 85 57.6
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 3.4e-20 102.8 95 51.6
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 3.4e-20 102.8 95 51.6
MELO3C034533.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.5e-20 102.4 116 44.8
MELO3C028546.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.0e-19 99.0 48 95.8
MELO3C028353.2 Cucumis melo HOM05D027665 ORTHO05D000592 8.5e-19 98.2 91 58.2
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 2.5e-18 96.7 80 50.0
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 2.5e-18 96.7 80 50.0
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 4.2e-18 95.9 80 50.0
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 4.2e-18 95.9 80 48.8
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 4.2e-18 95.9 80 48.8
MELO3C031440.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.5e-18 95.5 65 70.8
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 9.4e-18 94.7 80 48.8
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 2.1e-17 93.6 80 48.8
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-15 85.1 101 41.6
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-15 85.1 101 42.6
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-15 85.1 101 42.6
MELO3C033279.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-15 84.7 72 52.8
MELO3C033501.2 Cucumis melo HOM05D000539 ORTHO05D003213 6.3e-14 82.0 49 69.4
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 8.2e-14 81.6 101 40.6
MELO3C028760.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.1e-13 78.2 48 77.1
MELO3C032727.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-11 72.8 97 44.3
MELO3C028814.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.0e-11 72.4 67 49.3
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 8.5e-11 71.6 102 35.3
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 1.5e-10 70.9 70 47.1
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 1.9e-10 70.5 73 42.5
Sed0025490 Sechium edule HOM05D000539 ORTHO05D000592 3.2e-10 69.7 67 49.3
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 9.4e-10 68.2 70 44.3
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.2e-09 67.8 102 34.3
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.2e-09 67.8 71 45.1
RcHm_v2.0_Chr1g0355551 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-09 67.4 83 42.2
MELO3C028265.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-09 67.0 34 91.2
ClCG10G009520 Citrullus lanatus HOM05D000539 ORTHO05D000592 2.7e-09 66.6 49 53.1
MELO3C030592.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.7e-09 66.6 98 35.7
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.7e-09 66.6 99 31.3
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.7e-09 66.6 71 43.7
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.6e-09 66.2 77 44.2
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 8.0e-09 65.1 65 41.5
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 8.0e-09 65.1 67 44.8
SHI15762 Sapria himalayana HOM05D003883 ORTHO05D004605 8.0e-09 65.1 79 38.0
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.0e-08 64.7 118 29.7
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.4e-08 64.3 98 30.6
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-08 64.3 73 46.6
MELO3C032017.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-08 63.9 94 35.1
MELO3C032631.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-08 63.9 70 35.7
MELO3C034518.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-08 63.9 75 38.7
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.8e-08 63.9 102 36.3
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 1.8e-08 63.9 71 39.4
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 2.3e-08 63.5 130 25.4
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-08 63.5 71 39.4
MELO3C032739.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.0e-08 63.2 81 38.3
Prupe.3G119600 Prunus persica HOM05D000539 ORTHO05D000592 3.0e-08 63.2 106 38.7
Sed0011074 Sechium edule HOM05D007110 ORTHO05D000592 3.0e-08 63.2 87 39.1
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-08 62.8 70 42.9
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 4.0e-08 62.8 70 44.3
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 4.0e-08 62.8 66 45.5
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 5.2e-08 62.4 68 45.6
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 5.2e-08 62.4 113 30.1
MELO3C028520.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.7e-08 62.0 93 35.5
Prupe.1G199400 Prunus persica HOM05D000539 ORTHO05D000592 6.7e-08 62.0 106 37.7
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.8e-08 61.6 98 31.6
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.8e-08 61.6 98 29.6
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 8.8e-08 61.6 70 42.9
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-08 61.6 106 34.0
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 8.8e-08 61.6 105 34.3
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-07 61.2 96 37.5
MELO3C034500.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-07 61.2 68 36.8
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 1.1e-07 61.2 70 41.4
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 1.1e-07 61.2 70 41.4
Prupe.1G028600 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 38.7
Prupe.1G036300 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.2G053400 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 38.7
Prupe.2G089500 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.2G157500 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 38.7
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 38.7
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 38.7
Prupe.7G057400 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 61.2 106 36.8
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 1.5e-07 60.8 87 39.1
MELO3C029607.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-07 60.8 102 29.4
Prupe.1G184100 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-07 60.8 97 38.1
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-07 60.8 106 36.8
CANSAT54G1430 Cannabis sativa HOM05D000539 ORTHO05D000592 2.0e-07 60.5 103 32.0
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-07 60.5 76 39.5
Prupe.2G011100 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-07 60.5 106 37.7
Prupe.3G118800 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-07 60.5 106 36.8
Prupe.3G153900 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-07 60.5 106 37.7
Prupe.7G008900 Prunus persica HOM05D000539 ORTHO05D000592 2.0e-07 60.5 106 37.7
MELO3C028238.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.6e-07 60.1 67 37.3
MELO3C030650.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.6e-07 60.1 61 49.2
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 2.6e-07 60.1 106 35.8
Prupe.4G253500 Prunus persica HOM05D000539 ORTHO05D000592 2.6e-07 60.1 106 36.8
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 2.6e-07 60.1 97 37.1
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-07 59.7 71 38.0
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 3.3e-07 59.7 106 35.8
Prupe.5G062900 Prunus persica HOM05D000539 ORTHO05D000592 3.3e-07 59.7 102 38.2
Prupe.8G059600 Prunus persica HOM05D000539 ORTHO05D000592 3.3e-07 59.7 102 38.2
SHI29099 Sapria himalayana HOM05D000616 ORTHO05D000233 3.3e-07 59.7 62 48.4
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 3.3e-07 59.7 59 49.2
MELO3C033823.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.4e-07 59.3 75 41.3
Prupe.1G173700 Prunus persica HOM05D000539 ORTHO05D000592 4.4e-07 59.3 98 40.8
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.4e-07 59.3 99 31.3
Medtr2g060850 Medicago truncatula HOM05D002644 ORTHO05D000592 5.7e-07 58.9 83 33.7
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 5.7e-07 58.9 102 38.2
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 7.5e-07 58.5 72 37.5
CANSAT21G0837 Cannabis sativa HOM05D000539 ORTHO05D000592 7.5e-07 58.5 103 31.1
FvH4_4g09210 Fragaria vesca HOM05D000539 ORTHO05D000592 7.5e-07 58.5 73 42.5
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.5e-07 58.5 95 30.5
RcHm_v2.0_Chr2g0164701 Rosa chinensis HOM05D000539 ORTHO05D000592 7.5e-07 58.5 100 37.0
SHI32661 Sapria himalayana HOM05D000616 ORTHO05D000233 7.5e-07 58.5 89 38.2
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 7.5e-07 58.5 101 31.7
CANSAT80G2084 Cannabis sativa HOM05D000539 ORTHO05D000592 9.7e-07 58.2 103 31.1
MELO3C027269.2 Cucumis melo HOM05D000036 ORTHO05D000592 9.7e-07 58.2 93 34.4
PSO455G0190 Papaver somniferum HOM05D022837 ORTHO05D000233 9.7e-07 58.2 70 40.0
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 9.7e-07 58.2 102 38.2
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 9.7e-07 58.2 102 36.3
SHI38698 Sapria himalayana HOM05D000616 ORTHO05D000233 9.7e-07 58.2 65 46.2
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 1.3e-06 57.8 61 44.3
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 1.3e-06 57.8 70 40.0
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-06 57.8 107 31.8
MELO3C030090.2 Cucumis melo HOM05D009894 ORTHO05D169354 1.3e-06 57.8 33 81.8
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 1.3e-06 57.8 102 34.3
PSO170G1580 Papaver somniferum HOM05D022837 ORTHO05D000592 1.3e-06 57.8 70 38.6
Prupe.4G092400 Prunus persica HOM05D000539 ORTHO05D000592 1.3e-06 57.8 102 38.2
SHI22555 Sapria himalayana HOM05D000616 ORTHO05D000233 1.3e-06 57.8 64 45.3
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.7e-06 57.4 97 28.9
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.7e-06 57.4 63 38.1
RhsimUnG0164900 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.7e-06 57.4 81 35.8
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.2e-06 57.0 107 32.7
MELO3C028275.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.2e-06 57.0 122 29.5
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-06 57.0 70 40.0
MELO3C033275.2 Cucumis melo HOM05D013245 ORTHO05D000592 2.2e-06 57.0 63 47.6
Prupe.4G261200 Prunus persica HOM05D000539 ORTHO05D000592 2.2e-06 57.0 102 37.3
Prupe.7G033400 Prunus persica HOM05D000539 ORTHO05D000592 2.2e-06 57.0 102 35.3
SalBow7G1279 Salvia bowleyana HOM05D000539 ORTHO05D000592 2.2e-06 57.0 82 34.1
SHI00755 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 57.0 83 38.6
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.8e-06 56.6 105 32.4
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-06 56.6 65 35.4
MELO3C029685.2 Cucumis melo HOM05D000539 ORTHO05D016267 2.8e-06 56.6 95 34.7
MELO3C032622.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-06 56.6 59 45.8
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 2.8e-06 56.6 107 34.6
SHI22978 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-06 56.6 59 47.5
SHI35917 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-06 56.6 65 44.6
SHI42493 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-06 56.6 69 46.4
Prupe.1G174000 Prunus persica HOM05D000539 ORTHO05D000592 3.7e-06 56.2 102 37.3
Prupe.2G045600 Prunus persica HOM05D000539 ORTHO05D000592 3.7e-06 56.2 106 35.8
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 3.7e-06 56.2 75 41.3
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.8e-06 55.8 106 33.0
Ca_07064_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.8e-06 55.8 63 41.3
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.8e-06 55.8 90 34.4
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.8e-06 55.8 96 32.3
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.8e-06 55.8 96 32.3
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 4.8e-06 55.8 105 34.3
SalBow3G2933 Salvia bowleyana HOM05D000539 ORTHO05D000592 4.8e-06 55.8 105 30.5
SHI07772 Sapria himalayana HOM05D000616 ORTHO05D000233 4.8e-06 55.8 70 40.0
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 4.8e-06 55.8 100 33.0
Ca_05034_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.3e-06 55.5 73 38.4
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.3e-06 55.5 63 39.7
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.3e-06 55.5 69 40.6
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 6.3e-06 55.5 104 28.8
Medtr0089s0100 Medicago truncatula HOM05D002644 ORTHO05D015702 6.3e-06 55.5 67 43.3
SHI42234 Sapria himalayana HOM05D000616 ORTHO05D000233 6.3e-06 55.5 69 42.0
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 8.2e-06 55.1 104 35.6
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.2e-06 55.1 63 39.7
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.2e-06 55.1 96 34.4
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 8.2e-06 55.1 93 35.5
SHI38771 Sapria himalayana HOM05D000616 ORTHO05D000233 8.2e-06 55.1 58 44.8


User provided reference genes

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