Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030747.2 Cucumis melo HOM05D001535 ORTHO05D170562 2.9e-227 791.6 401 100.0
MELO3C023989.2 Cucumis melo HOM05D001535 ORTHO05D004010 1.1e-11 75.5 39 84.6
CsaV3_3G032020 Cucumis sativus L. HOM05D001535 ORTHO05D004010 2.3e-11 74.3 39 82.1
Lj3g0004407 Lotus japonicus HOM05D001535 ORTHO05D004010 4.4e-10 70.1 39 74.4
COL.COLO4_04874 Corchorus olitorius HOM05D001535 ORTHO05D004010 7.5e-10 69.3 39 74.4
QL11p053824 Quercus lobata HOM05D001535 ORTHO05D004010 7.5e-10 69.3 39 76.9
Thecc.01G408100 Theobroma cacao HOM05D001535 ORTHO05D004010 7.5e-10 69.3 39 74.4
Ca_14185_v3 Cicer arietinum L. HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 74.4
MELO3C023990.2 Cucumis melo HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 71.8
CsaV3_3G032010 Cucumis sativus L. HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 71.8
Medtr3g032530 Medicago truncatula HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 74.4
Sed0009367 Sechium edule HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 71.8
Sed0019833 Sechium edule HOM05D001535 ORTHO05D004010 9.8e-10 68.9 39 71.8
CANSAT80G0784 Cannabis sativa HOM05D001535 ORTHO05D004010 1.7e-09 68.2 39 71.8
Eucgr.G03364 Eucalyptus grandis HOM05D001535 ORTHO05D004010 1.7e-09 68.2 39 71.8
Eucgr.G03363 Eucalyptus grandis HOM05D001535 ORTHO05D004010 2.2e-09 67.8 39 69.2
MD07G1018200 Malus domestica HOM05D001535 ORTHO05D004010 2.2e-09 67.8 39 71.8
Duzib133G1041 Durio zibethinus HOM05D001535 ORTHO05D004010 2.9e-09 67.4 39 71.8
Gohir.A08G054900 Gossypium hirsutum HOM05D001535 ORTHO05D004010 2.9e-09 67.4 39 71.8
Gohir.D08G064400 Gossypium hirsutum HOM05D001535 ORTHO05D004010 2.9e-09 67.4 39 71.8
Gorai.004G066700 Gossypium raimondii HOM05D001535 ORTHO05D004010 2.9e-09 67.4 39 71.8
PSO339G0058 Papaver somniferum HOM05D001535 ORTHO05D004010 2.9e-09 67.4 37 75.7
THA.LOC104809850 Tarenaya hassleriana HOM05D001535 ORTHO05D004010 2.9e-09 67.4 39 71.8
Duzib138G0178 Durio zibethinus HOM05D001535 ORTHO05D004010 3.7e-09 67.0 39 71.8
Lalb_Chr25g0282831 Lupinus albus HOM05D001535 ORTHO05D004010 3.7e-09 67.0 39 71.8
arahy.Tifrunner.gnm1.ann1.8BL5SS Arachis hypogaea HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 69.2
arahy.Tifrunner.gnm1.ann1.ZH6VX0 Arachis hypogaea HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 69.2
Cpa.g.sc125.30 Carica papaya HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
Ciclev10031748m.g Citrus clementina HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 69.2
Haze_03171 Corylus avellana HOM05D001535 ORTHO05D004010 4.9e-09 66.6 83 44.6
FvH4_7g01390 Fragaria vesca HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
FAN03G0911 Fragaria x ananassa HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
FAN06G1492 Fragaria x ananassa HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
FAN10G1771 Fragaria x ananassa HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
Glyma.12G009200 Glycine max HOM05D001535 ORTHO05D004010 4.9e-09 66.6 40 67.5
MD02G1307400 Malus domestica HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 69.2
QL04p008841 Quercus lobata HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
RcHm_v2.0_Chr1g0317111 Rosa chinensis HOM05D001535 ORTHO05D004010 4.9e-09 66.6 39 71.8
ATR0332G047 Amborella trichopoda HOM05D001535 ORTHO05D004010 6.4e-09 66.2 37 75.7
Lj3g0001696 Lotus japonicus HOM05D001535 ORTHO05D004010 6.4e-09 66.2 39 66.7
Lj3g0026980 Lotus japonicus HOM05D001535 ORTHO05D004010 6.4e-09 66.2 39 66.7
Phvul.011G011800 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 6.4e-09 66.2 39 69.2
Hund08393 Selenicereus undatus HOM05D001535 ORTHO05D004010 6.4e-09 66.2 37 73.0
ATR0332G035 Amborella trichopoda HOM05D001535 ORTHO05D004010 8.3e-09 65.9 37 75.7
CiPaw.13G007200 Carya illinoinensis HOM05D001535 ORTHO05D004010 8.3e-09 65.9 39 69.2
Glyma.12G009300 Glycine max HOM05D001535 ORTHO05D004010 8.3e-09 65.9 39 66.7
HanXRQChr16g0524821 Helianthus annuus HOM05D001535 ORTHO05D004010 8.3e-09 65.9 37 73.0
HanXRQChr17g0563031 Helianthus annuus HOM05D001535 ORTHO05D004010 8.3e-09 65.9 37 73.0
Psat5g210200 Pisum sativum HOM05D001535 ORTHO05D004010 8.3e-09 65.9 39 71.8
Sed0009889 Sechium edule HOM05D001535 ORTHO05D004010 8.3e-09 65.9 39 71.8
Thecc.01G407900 Theobroma cacao HOM05D001535 ORTHO05D004010 8.3e-09 65.9 39 69.2
Eucgr.G03316 Eucalyptus grandis HOM05D001535 ORTHO05D004010 1.1e-08 65.5 37 73.0
Eucgr.G03330 Eucalyptus grandis HOM05D001535 ORTHO05D004010 1.1e-08 65.5 37 73.0
Manes.07G007800 Manihot esculenta HOM05D001535 ORTHO05D004010 1.1e-08 65.5 49 59.2
PSO384G2229 Papaver somniferum HOM05D001535 ORTHO05D004010 1.1e-08 65.5 37 73.0
PGR031G0628 Punica granatum HOM05D001535 ORTHO05D004010 1.1e-08 65.5 39 69.2
RhsimUnG0121800 Rhododendron simsii HOM05D001535 ORTHO05D004010 1.1e-08 65.5 48 62.5
FAN01G2128 Fragaria x ananassa HOM05D001535 ORTHO05D004010 1.4e-08 65.1 39 69.2
Manes.10G139400 Manihot esculenta HOM05D001535 ORTHO05D004010 1.4e-08 65.1 39 69.2
Potri.009G058600 Populus trichocarpa HOM05D001535 ORTHO05D004010 1.4e-08 65.1 39 69.2
VMungo1080G0569 Vigna mungo HOM05D001535 ORTHO05D004010 1.4e-08 65.1 39 69.2
GSVIVG01032155001 Vitis vinifera HOM05D001535 ORTHO05D004010 1.4e-08 65.1 37 73.0
Glyma.10G090500 Glycine max HOM05D001535 ORTHO05D004010 1.9e-08 64.7 39 69.2
Hma1.2p1_1328F.1_g275930 Hydrangea macrophylla HOM05D001535 ORTHO05D004010 1.9e-08 64.7 37 73.0
Lsat_1_v5_gn_4_31180 Lactuca sativa HOM05D001535 ORTHO05D004010 1.9e-08 64.7 37 70.3
Prupe.2G019200 Prunus persica HOM05D001535 ORTHO05D004010 1.9e-08 64.7 39 69.2
Sc10g0000200 Simmondsia chinensis HOM05D001535 ORTHO05D004010 1.9e-08 64.7 37 70.3
CDE05G0501 Ceratophyllum demersum HOM05D001535 ORTHO05D004010 2.4e-08 64.3 37 73.0
Glyma.15G276300 Glycine max HOM05D001535 ORTHO05D004010 2.4e-08 64.3 39 69.2
Rhsim05G0184300 Rhododendron simsii HOM05D001535 ORTHO05D004010 2.4e-08 64.3 37 73.0
TAR633G1865 Trochodendron aralioides HOM05D001535 ORTHO05D004010 2.4e-08 64.3 37 73.0
Atru.chr11.2584 Acer truncatum HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
BcaB01g05340 Brassica carinata HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
BcaC04g24264 Brassica carinata HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
A03p06150 Brassica napus HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
C03p07160 Brassica napus HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
CiPaw.14G001900 Carya illinoinensis HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 69.2
AUR62009400 Chenopodium quinoa HOM05D001535 ORTHO05D004010 3.2e-08 63.9 37 70.3
AUR62023083 Chenopodium quinoa HOM05D001535 ORTHO05D004010 3.2e-08 63.9 37 70.3
ECA234G3998 Erigeron canadensis HOM05D001535 ORTHO05D004010 3.2e-08 63.9 37 70.3
Thhalv10014014m.g Eutrema salsugineum HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
Sp6g30310 Schrenkiella parvula HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 66.7
Thecc.01G408000 Theobroma cacao HOM05D001535 ORTHO05D004010 3.2e-08 63.9 39 69.2
Thecc.05G156300 Theobroma cacao HOM05D001535 ORTHO05D004010 3.2e-08 63.9 38 71.1
TAR369G0519 Trochodendron aralioides HOM05D001535 ORTHO05D004010 3.2e-08 63.9 37 73.0
vmacro13686 Vaccinium macrocarpon HOM05D001535 ORTHO05D004010 3.2e-08 63.9 37 70.3
AL6G24320 Arabidopsis lyrata HOM05D001535 ORTHO05D004010 4.1e-08 63.5 39 66.7
AT5G13710 Arabidopsis thaliana HOM05D001535 ORTHO05D004010 4.1e-08 63.5 39 66.7
Carub.0006s1189 Capsella rubella HOM05D001535 ORTHO05D004010 4.1e-08 63.5 39 66.7
Lj9C638G10 Lonicera japonica HOM05D001535 ORTHO05D004010 4.1e-08 63.5 37 70.3
Phvul.005G023700 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 4.1e-08 63.5 39 66.7
Sabra09G0043000 Salix brachista HOM05D001535 ORTHO05D004010 4.1e-08 63.5 39 69.2
Aqoxy1G00258 Aquilegia oxysepala HOM05D001535 ORTHO05D004010 5.4e-08 63.2 38 65.8
EL10Ac2g04347 Beta vulgaris HOM05D001535 ORTHO05D004010 5.4e-08 63.2 37 67.6
Cc02_g28350 Coffea canephora HOM05D001535 ORTHO05D004010 5.4e-08 63.2 37 70.3
Lalb_Chr20g0107911 Lupinus albus HOM05D001535 ORTHO05D004010 5.4e-08 63.2 39 66.7
Nn7g36263 Nelumbo nucifera HOM05D001535 ORTHO05D004010 5.4e-08 63.2 37 70.3
MSTRG.20568 Avicennia marina HOM05D001535 ORTHO05D004010 7.0e-08 62.8 37 67.6
BcaNung04191 Brassica carinata HOM05D001535 ORTHO05D004010 7.0e-08 62.8 39 66.7
A02p02120 Brassica napus HOM05D001535 ORTHO05D004010 7.0e-08 62.8 39 66.7
C02p06370 Brassica napus HOM05D001535 ORTHO05D004010 7.0e-08 62.8 39 66.7
BraA02t05184Z Brassica rapa HOM05D001535 ORTHO05D004010 7.0e-08 62.8 39 66.7
CSS0002789 Camellia sinensis var. sinensis HOM05D001535 ORTHO05D004010 7.0e-08 62.8 38 68.4
SEGI_27559 Sequoiadendron giganteum HOM05D001535 ORTHO05D004010 7.0e-08 62.8 37 70.3
TAR623G1785 Trochodendron aralioides HOM05D000636 ORTHO05D004010 7.0e-08 62.8 37 73.0
CARHR199730 Cardamine hirsuta HOM05D001535 ORTHO05D004010 9.2e-08 62.4 39 66.7
COL.COLO4_28257 Corchorus olitorius HOM05D001535 ORTHO05D004010 9.2e-08 62.4 38 68.4
Oeu049488.1 Olea europaea HOM05D001535 ORTHO05D004010 9.2e-08 62.4 37 70.3
Oeu049489.1 Olea europaea HOM05D001535 ORTHO05D004010 9.2e-08 62.4 37 70.3
RhsimUnG0121500 Rhododendron simsii HOM05D001535 ORTHO05D004010 9.2e-08 62.4 37 70.3
Aa31LG5G16620 Aethionema arabicum HOM05D001535 ORTHO05D004010 1.2e-07 62.0 49 55.1
COL.COLO4_28253 Corchorus olitorius HOM05D001535 ORTHO05D004010 1.2e-07 62.0 37 70.3
QL07p000219 Quercus lobata HOM05D001535 ORTHO05D004010 1.2e-07 62.0 38 68.4
SGA_v2.0_scaffold4G02505 Striga asiatica HOM05D001535 ORTHO05D004010 1.2e-07 62.0 37 67.6
THA.LOC104819087 Tarenaya hassleriana HOM05D001535 ORTHO05D004010 1.2e-07 62.0 39 64.1
TWI09G1006 Tripterygium wilfordii HOM05D001535 ORTHO05D004010 1.2e-07 62.0 39 64.1
TWI53G1786 Tripterygium wilfordii HOM05D001535 ORTHO05D004010 1.2e-07 62.0 39 64.1
Actinidia19407 Actinidia chinensis HOM05D001535 ORTHO05D004010 1.6e-07 61.6 92 40.2
Aa31LG9G6280 Aethionema arabicum HOM05D001535 ORTHO05D004010 1.6e-07 61.6 39 64.1
Potri.016G056000 Populus trichocarpa HOM05D001535 ORTHO05D004010 1.6e-07 61.6 38 68.4
Sabra16G0161900 Salix brachista HOM05D001535 ORTHO05D004010 1.6e-07 61.6 39 64.1
SEGI_06554 Sequoiadendron giganteum HOM05D001535 ORTHO05D004010 1.6e-07 61.6 37 67.6
Dinv09326 Davidia involucrata HOM05D001535 ORTHO05D004010 2.0e-07 61.2 37 73.0
Lsat_1_v5_gn_1_105621 Lactuca sativa HOM05D001535 ORTHO05D004010 2.0e-07 61.2 37 67.6
Nitab4.5_0002645g0030 Nicotiana tabacum HOM05D001535 ORTHO05D004010 2.0e-07 61.2 37 64.9
Potri.001G263700 Populus trichocarpa HOM05D001535 ORTHO05D004010 2.0e-07 61.2 39 64.1
Rhsim07G0057300 Rhododendron simsii HOM05D001535 ORTHO05D004010 2.0e-07 61.2 37 67.6
Rhsim07G0057400 Rhododendron simsii HOM05D001535 ORTHO05D004010 2.0e-07 61.2 47 57.4
Rhsim07G0057500 Rhododendron simsii HOM05D001535 ORTHO05D004010 2.0e-07 61.2 47 57.4
Migut.B01280 Erythranthe guttata HOM05D001535 ORTHO05D004010 2.7e-07 60.8 37 64.9
SMO119G0140 Selaginella moellendorffii HOM05D001535 ORTHO05D004010 2.7e-07 60.8 37 62.2
SGA_v2.0_scaffold119G32749 Striga asiatica HOM05D001535 ORTHO05D004010 2.7e-07 60.8 37 64.9
Actinidia21543 Actinidia chinensis HOM05D001535 ORTHO05D004010 3.5e-07 60.5 47 55.3
Nn2g15264 Nelumbo nucifera HOM05D001535 ORTHO05D004010 3.5e-07 60.5 37 64.9
PSO210G3275 Papaver somniferum HOM05D001535 ORTHO05D004010 3.5e-07 60.5 37 67.6
Hma1.2p1_1328F.1_g275940 Hydrangea macrophylla HOM05D001535 ORTHO05D004010 4.6e-07 60.1 37 70.3
Os07g0206700 Oryza sativa ssp. japonica HOM05D001535 ORTHO05D004010 4.6e-07 60.1 38 63.2
Nitab4.5_0001509g0020 Nicotiana tabacum HOM05D001535 ORTHO05D004010 6.0e-07 59.7 39 61.5
THA.LOC104819086 Tarenaya hassleriana HOM05D001535 ORTHO05D004010 7.8e-07 59.3 39 61.5
Atru.chr1.1082 Acer truncatum HOM05D001535 ORTHO05D004010 1.0e-06 58.9 39 61.5
CSS0001823 Camellia sinensis var. sinensis HOM05D001535 ORTHO05D004010 1.0e-06 58.9 37 67.6
CAN.G128.10 Capsicum annuum HOM05D001535 ORTHO05D004010 1.0e-06 58.9 39 59.0
Nitab4.5_0000707g0230 Nicotiana tabacum HOM05D001535 ORTHO05D004010 1.0e-06 58.9 37 62.2
RcHm_v2.0_Chr3g0482141 Rosa chinensis HOM05D001535 ORTHO05D004010 1.0e-06 58.9 39 61.5
GSVIVG01033285001 Vitis vinifera HOM05D001535 ORTHO05D004010 1.0e-06 58.9 38 63.2
Zm00001eb303010 Zea mays HOM05D001535 ORTHO05D004010 1.0e-06 58.9 38 60.5
Nitab4.5_0004587g0050 Nicotiana tabacum HOM05D001535 ORTHO05D004010 1.3e-06 58.5 39 59.0
Nitab4.5_0006340g0030 Nicotiana tabacum HOM05D001535 ORTHO05D004010 1.3e-06 58.5 37 62.2
Peaxi162Scf00354g00224 Petunia axillaris HOM05D001535 ORTHO05D004010 1.3e-06 58.5 39 59.0
RhsimUnG0121400 Rhododendron simsii HOM05D001535 ORTHO05D004010 1.3e-06 58.5 33 69.7
Solyc10g080150.2 Solanum lycopersicum HOM05D001535 ORTHO05D004010 1.3e-06 58.5 39 59.0
Sopen10g030760 Solanum pennellii HOM05D001535 ORTHO05D004010 1.3e-06 58.5 39 59.0
Manes.08G051000 Manihot esculenta HOM05D001535 ORTHO05D004010 3.0e-06 57.4 37 64.9
HPP92_023572 Vanilla planifolia HOM05D001535 ORTHO05D004010 3.9e-06 57.0 37 62.2
Peaxi162Scf00019g00016 Petunia axillaris HOM05D001535 ORTHO05D004010 8.6e-06 55.8 37 59.5
Phvul.011G011900 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 8.6e-06 55.8 40 57.5
RhsimUnG0121700 Rhododendron simsii HOM05D001535 ORTHO05D004010 8.6e-06 55.8 33 66.7


User provided reference genes

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