Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 2.3e-156 555.4 263 100.0
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 1.4e-28 131.0 68 97.1
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 4.0e-28 129.4 70 95.7
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 4.9e-26 122.5 66 92.4
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 7.1e-25 118.6 66 86.4
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 2.1e-24 117.1 66 84.8
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 4.6e-24 115.9 70 82.9
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 6.0e-24 115.5 70 82.9
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 6.0e-24 115.5 93 63.4
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 7.8e-24 115.2 66 83.3
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 1.0e-23 114.8 70 78.6
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 1.3e-23 114.4 66 84.8
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 1.7e-23 114.0 66 84.8
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 1.7e-23 114.0 70 78.6
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 2.3e-23 113.6 70 80.0
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 3.9e-23 112.8 66 86.4
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 6.6e-23 112.1 75 74.7
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.7e-23 111.7 66 84.8
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.7e-23 111.7 66 84.8
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 8.7e-23 111.7 66 84.8
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 1.5e-22 110.9 70 75.7
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 1.5e-22 110.9 67 77.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 1.5e-22 110.9 67 77.6
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 1.9e-22 110.5 66 78.8
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 1.9e-22 110.5 66 78.8
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 1.9e-22 110.5 95 63.2
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 1.9e-22 110.5 65 81.5
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 2.5e-22 110.2 95 62.1
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 2.5e-22 110.2 65 81.5
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 3.3e-22 109.8 66 78.8
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 3.3e-22 109.8 66 78.8
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 4.3e-22 109.4 92 65.2
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 4.3e-22 109.4 70 75.7
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 4.3e-22 109.4 70 77.1
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 5.6e-22 109.0 70 75.7
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 5.6e-22 109.0 66 83.3
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 7.3e-22 108.6 93 64.5
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 7.3e-22 108.6 70 74.3
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 7.3e-22 108.6 70 78.6
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 7.3e-22 108.6 70 78.6
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 7.3e-22 108.6 66 80.3
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 7.3e-22 108.6 66 80.3
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 9.6e-22 108.2 70 70.0
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 9.6e-22 108.2 66 77.3
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 1.3e-21 107.8 70 74.3
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 1.3e-21 107.8 70 77.1
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.3e-21 107.8 70 77.1
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.3e-21 107.8 66 81.8
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 1.3e-21 107.8 65 80.0
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 1.3e-21 107.8 75 74.7
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.6e-21 107.5 70 75.7
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.6e-21 107.5 68 76.5
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.6e-21 107.5 67 79.1
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.6e-21 107.5 89 66.3
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 1.6e-21 107.5 66 81.8
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 2.1e-21 107.1 92 63.0
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 2.1e-21 107.1 70 77.1
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 2.1e-21 107.1 66 81.8
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 2.1e-21 107.1 66 81.8
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 2.1e-21 107.1 95 61.1
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 2.8e-21 106.7 70 77.1
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 3.6e-21 106.3 66 77.3
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 3.6e-21 106.3 66 80.3
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 4.8e-21 105.9 66 81.8
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 6.2e-21 105.5 70 68.6
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 6.2e-21 105.5 66 77.3
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 6.2e-21 105.5 70 74.3
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 6.2e-21 105.5 70 74.3
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 6.2e-21 105.5 70 74.3
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 8.1e-21 105.1 68 73.5
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 8.1e-21 105.1 70 74.3
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 8.1e-21 105.1 70 74.3
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 8.1e-21 105.1 66 77.3
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 8.1e-21 105.1 70 72.9
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.1e-21 105.1 66 80.3
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.1e-21 105.1 66 80.3
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 8.1e-21 105.1 68 72.1
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 8.1e-21 105.1 70 75.7
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.1e-20 104.8 66 80.3
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 1.1e-20 104.8 92 59.8
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.1e-20 104.8 70 72.9
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 1.1e-20 104.8 70 74.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.1e-20 104.8 70 74.3
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 1.1e-20 104.8 66 75.8
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 1.4e-20 104.4 66 77.3
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 1.4e-20 104.4 65 75.4
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 1.4e-20 104.4 70 72.9
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.8e-20 104.0 70 67.1
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 1.8e-20 104.0 68 70.6
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 1.8e-20 104.0 70 72.9
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 1.8e-20 104.0 70 71.4
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 1.8e-20 104.0 95 57.9
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 1.8e-20 104.0 66 77.3
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 1.8e-20 104.0 70 72.9
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 2.4e-20 103.6 70 70.0
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 2.4e-20 103.6 68 70.6
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 2.4e-20 103.6 68 70.6
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.4e-20 103.6 68 67.6
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 2.4e-20 103.6 70 71.4
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 2.4e-20 103.6 70 72.9
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 3.1e-20 103.2 68 70.6
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 3.1e-20 103.2 70 72.9
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 3.1e-20 103.2 131 43.5
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 3.1e-20 103.2 66 77.3
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 3.1e-20 103.2 70 71.4
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 4.0e-20 102.8 70 72.9
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 5.3e-20 102.4 70 67.1
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 6.9e-20 102.1 66 69.7
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 9.0e-20 101.7 68 69.1
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 9.0e-20 101.7 70 71.4
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 1.2e-19 101.3 70 68.6
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 1.2e-19 101.3 70 68.6
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 2.6e-19 100.1 68 69.1
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 2.6e-19 100.1 66 71.2
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 3.4e-19 99.8 70 67.1
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 3.4e-19 99.8 70 70.0
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 9.9e-19 98.2 68 67.6
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 1.3e-18 97.8 68 67.6
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 1.3e-18 97.8 70 68.6
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 1.7e-18 97.4 68 66.2
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 1.7e-18 97.4 70 68.6
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 2.9e-18 96.7 70 62.9
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 3.8e-18 96.3 70 67.1
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 3.8e-18 96.3 66 66.7
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 3.8e-18 96.3 66 66.7
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 6.4e-18 95.5 70 62.9
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 8.4e-18 95.1 66 68.2
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 1.9e-17 94.0 66 65.2
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.2e-17 92.8 66 65.2
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 4.2e-17 92.8 97 55.7
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 5.4e-17 92.4 67 64.2
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 9.3e-17 91.7 71 63.4
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 2.1e-16 90.5 70 65.7
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 2.1e-16 90.5 66 62.1
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.7e-16 90.1 69 63.8
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.7e-16 90.1 69 63.8
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 4.6e-16 89.4 133 39.8
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 6.0e-16 89.0 69 63.8
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 7.9e-16 88.6 69 62.3
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 3.9e-15 86.3 66 63.6
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 6.7e-15 85.5 68 58.8
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 8.7e-15 85.1 46 82.6
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 1.8e-12 77.4 66 57.6
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 2.0e-11 73.9 67 53.7
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.4e-11 73.2 44 79.5
HPP92_001782 Vanilla planifolia HOM05D004888 ORTHO05D005792 3.4e-11 73.2 70 50.0
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 1.3e-10 71.2 66 53.0
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 1.3e-10 71.2 41 73.2
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.7e-10 70.9 64 51.6
Sc16g0006310 Simmondsia chinensis HOM05D004888 ORTHO05D005792 2.1e-08 63.9 95 37.9
RcHm_v2.0_Chr7g0216541 Rosa chinensis HOM05D004888 ORTHO05D005792 1.3e-07 61.2 54 63.0
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.0e-07 60.1 68 52.9
TPR.G14115 Trifolium pratense HOM05D004956 ORTHO05D006284 1.5e-06 57.8 98 38.8
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.9e-06 57.4 43 69.8
Zm00001eb106080 Zea mays HOM05D004888 ORTHO05D005792 1.9e-06 57.4 62 50.0
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.3e-06 56.6 66 42.4
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 5.6e-06 55.8 58 48.3


User provided reference genes

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