Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030669.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.1e-179 633.3 329 100.0
MELO3C034336.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.7e-87 325.9 309 63.8
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.0e-52 209.1 171 72.5
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-46 191.0 164 70.7
MELO3C004885.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-46 190.3 300 47.0
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.2e-41 172.6 184 58.2
MELO3C034413.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-39 166.8 160 63.8
MELO3C027571.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-36 158.3 136 72.8
MELO3C034371.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.1e-35 154.8 297 42.1
MELO3C027188.2 Cucumis melo HOM05D000583 ORTHO05D000233 1.1e-27 128.3 144 46.5
MELO3C027955.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.3e-27 125.6 131 51.1
CsaV3_6G018640 Cucumis sativus L. HOM05D000539 ORTHO05D000233 5.2e-25 119.4 99 60.6
ClCG09G008820 Citrullus lanatus HOM05D000539 ORTHO05D000233 1.5e-24 117.9 121 49.6
Sed0019036 Sechium edule HOM05D000539 ORTHO05D000592 1.3e-23 114.8 199 41.7
MELO3C028993.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.7e-23 113.2 124 58.1
Sed0011713 Sechium edule HOM05D000539 ORTHO05D000233 3.7e-23 113.2 107 51.4
MELO3C033845.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.9e-23 112.8 117 47.9
ClCG02G012710 Citrullus lanatus HOM05D000539 ORTHO05D000233 2.4e-22 110.5 105 54.3
MELO3C035567.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.1e-22 109.8 100 67.0
MELO3C033352.2 Cucumis melo HOM05D058482 ORTHO05D000592 5.4e-22 109.4 80 76.2
MELO3C028232.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.0e-22 109.0 60 91.7
ClCG02G009460 Citrullus lanatus HOM05D000616 ORTHO05D000233 1.2e-21 108.2 139 44.6
MELO3C031516.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-19 101.3 106 63.2
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.9e-19 100.9 93 52.7
Sed0019136 Sechium edule HOM05D000539 ORTHO05D000233 2.5e-19 100.5 116 44.0
MELO3C032241.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.6e-18 97.8 101 47.5
MELO3C029587.2 Cucumis melo HOM05D000616 ORTHO05D000233 8.0e-18 95.5 84 54.8
Sed0009359 Sechium edule HOM05D000107 ORTHO05D000062 1.8e-17 94.4 114 43.9
Sed0022033 Sechium edule HOM05D000539 ORTHO05D000233 2.3e-17 94.0 104 48.1
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.0e-17 93.2 101 47.5
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 5.2e-17 92.8 110 42.7
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 5.2e-17 92.8 107 43.0
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 6.8e-17 92.4 120 40.8
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 6.8e-17 92.4 101 46.5
MELO3C030505.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.5e-16 91.3 141 40.4
Sed0016258 Sechium edule HOM05D000539 ORTHO05D000233 2.9e-15 87.0 98 46.9
CsaV3_4G008540 Cucumis sativus L. HOM05D000539 ORTHO05D000233 3.7e-15 86.7 109 41.3
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.9e-15 86.3 166 31.3
MELO3C031353.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.9e-15 86.3 114 43.9
MELO3C030143.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.4e-15 85.9 76 68.4
ClCG02G006470 Citrullus lanatus HOM05D000539 ORTHO05D000233 1.4e-14 84.7 116 40.5
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 5.4e-14 82.8 113 39.8
Sed0010052 Sechium edule HOM05D000539 ORTHO05D000233 1.6e-13 81.3 100 43.0
MELO3C035597.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.5e-13 80.1 214 30.8
ClCG03G012240 Citrullus lanatus HOM05D016206 ORTHO05D000233 1.0e-12 78.6 162 33.3
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 1.3e-12 78.2 123 35.8
MELO3C027932.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.0e-12 77.0 111 34.2
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 6.6e-12 75.9 132 31.8
RhsimUnG0218400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-11 75.1 123 32.5
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-11 73.6 49 81.6
CsaV3_3G020500 Cucumis sativus L. HOM05D007110 ORTHO05D000233 3.3e-11 73.6 172 27.3
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 4.3e-11 73.2 115 31.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 7.3e-11 72.4 234 27.4
MELO3C027432.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.2e-10 71.6 148 29.1
MELO3C030421.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.2e-10 71.6 125 29.6
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.2e-10 71.6 119 32.8
MELO3C033340.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.8e-10 70.5 77 48.1
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.4e-09 68.2 115 32.2
Sed0004787 Sechium edule HOM05D000539 ORTHO05D000233 1.4e-09 68.2 110 37.3
MELO3C029326.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.3e-09 67.4 210 31.0
MELO3C030626.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.3e-09 67.4 68 48.5
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 2.3e-09 67.4 109 34.9
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 4.0e-09 66.6 116 31.9
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-09 66.2 134 32.8
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 5.2e-09 66.2 103 35.0
CANSAT01G0116 Cannabis sativa HOM05D000539 ORTHO05D000233 8.9e-09 65.5 110 32.7
MELO3C033323.2 Cucumis melo HOM05D000616 ORTHO05D000233 1.2e-08 65.1 76 44.7
FAN24G3557 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.2e-08 65.1 139 30.9
SHI45135 Sapria himalayana HOM05D000616 ORTHO05D000233 1.2e-08 65.1 107 32.7
Lj3g0009478 Lotus japonicus HOM05D002644 ORTHO05D003267 1.5e-08 64.7 122 33.6
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 1.5e-08 64.7 116 31.0
RcHm_v2.0_Chr3g0482281 Rosa chinensis HOM05D002644 ORTHO05D000233 2.0e-08 64.3 82 42.7
FvH4_3g14361 Fragaria vesca HOM05D000539 ORTHO05D000233 2.6e-08 63.9 115 31.3
FvH4_7g02602 Fragaria vesca HOM05D000539 ORTHO05D000233 2.6e-08 63.9 115 31.3
FAN11G1109 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.6e-08 63.9 115 31.3
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.6e-08 63.9 104 31.7
RcHm_v2.0_Chr2g0095191 Rosa chinensis HOM05D000107 ORTHO05D000062 2.6e-08 63.9 119 29.4
Ca_23735_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.4e-08 63.5 128 32.0
SHI23010 Sapria himalayana HOM05D000616 ORTHO05D000233 3.4e-08 63.5 116 32.8
Ca_28121_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.8e-08 62.8 118 33.1
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.8e-08 62.8 100 33.0
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 5.8e-08 62.8 92 40.2
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 7.5e-08 62.4 102 29.4
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 9.9e-08 62.0 103 34.0
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 9.9e-08 62.0 115 30.4
RcHm_v2.0_Chr4g0414231 Rosa chinensis HOM05D000539 ORTHO05D000233 9.9e-08 62.0 100 33.0
SHI08656 Sapria himalayana HOM05D000616 ORTHO05D000233 9.9e-08 62.0 120 30.0
Ca_01746_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-07 61.6 128 31.2
Ca_02392_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-07 61.6 128 31.2
Ca_06768_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-07 61.6 128 31.2
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.3e-07 61.6 106 34.0
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-07 61.6 111 31.5
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-07 61.6 111 31.5
Ca_02337_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_05273_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_06038_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_10491_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_20649_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
Ca_26256_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-07 61.2 128 31.2
SHI23515 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-07 61.2 142 29.6
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 2.2e-07 60.8 106 34.9
FAN06G1168 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.2e-07 60.8 115 30.4
Ciclev10003872m.g Citrus clementina HOM05D002644 ORTHO05D000233 2.9e-07 60.5 101 36.6
MELO3C034611.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.9e-07 60.5 190 26.8
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 2.9e-07 60.5 97 35.1
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 2.9e-07 60.5 119 30.3
Ca_19870_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.7e-07 60.1 132 29.5
Ca_25836_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.7e-07 60.1 125 31.2
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-07 60.1 115 30.4
SHI08770 Sapria himalayana HOM05D000616 ORTHO05D000233 3.7e-07 60.1 107 31.8
SHI44572 Sapria himalayana HOM05D000616 ORTHO05D000233 4.9e-07 59.7 107 30.8
CANSAT11G2450 Cannabis sativa HOM05D013932 ORTHO05D011884 6.4e-07 59.3 114 26.3
CANSAT35G1647 Cannabis sativa HOM05D000539 ORTHO05D000233 6.4e-07 59.3 105 32.4
Ca_13655_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-07 59.3 128 31.2
ClCG01G012290 Citrullus lanatus HOM05D000539 ORTHO05D000233 6.4e-07 59.3 206 32.0
MELO3C032426.2 Cucumis melo HOM05D000616 ORTHO05D000233 6.4e-07 59.3 187 29.9
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 6.4e-07 59.3 103 32.0
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 6.4e-07 59.3 100 32.0
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 6.4e-07 59.3 100 33.0
SHI38524 Sapria himalayana HOM05D000616 ORTHO05D000233 6.4e-07 59.3 97 34.0
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 8.3e-07 58.9 97 29.9
MELO3C035661.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.3e-07 58.9 34 88.2
SHI23185 Sapria himalayana HOM05D000616 ORTHO05D000233 8.3e-07 58.9 103 33.0
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-06 58.5 101 31.7
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-06 58.5 101 31.7
RcHm_v2.0_Chr5g0072061 Rosa chinensis HOM05D000539 ORTHO05D000233 1.1e-06 58.5 92 32.6
CANSAT54G2622 Cannabis sativa HOM05D000539 ORTHO05D000233 1.4e-06 58.2 114 26.3
Ca_31229_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.4e-06 58.2 113 32.7
Lj2g0011920 Lotus japonicus HOM05D002644 ORTHO05D003267 1.4e-06 58.2 117 28.2
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-06 58.2 100 31.0
SHI00366 Sapria himalayana HOM05D000616 ORTHO05D000233 1.4e-06 58.2 121 29.8
SHI42017 Sapria himalayana HOM05D000616 ORTHO05D000233 1.4e-06 58.2 118 28.8
AUR62029162 Chenopodium quinoa HOM05D007123 ORTHO05D000233 1.9e-06 57.8 105 28.6
Ca_03238_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.9e-06 57.8 128 31.2
Ca_05602_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.9e-06 57.8 128 30.5
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 1.9e-06 57.8 101 30.7
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 1.9e-06 57.8 101 30.7
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 1.9e-06 57.8 120 27.5
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.9e-06 57.8 98 30.6
SHI32661 Sapria himalayana HOM05D000616 ORTHO05D000233 1.9e-06 57.8 118 29.7
Ca_02391_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.4e-06 57.4 128 30.5
Ca_19517_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.4e-06 57.4 125 31.2
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 2.4e-06 57.4 99 31.3
RcHm_v2.0_Chr1g0340601 Rosa chinensis HOM05D000539 ORTHO05D000233 2.4e-06 57.4 117 29.1
FAN27G3263 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.2e-06 57.0 96 29.2
RcHm_v2.0_Chr2g0123111 Rosa chinensis HOM05D000539 ORTHO05D000233 4.1e-06 56.6 101 27.7
AUR62042679 Chenopodium quinoa HOM05D007123 ORTHO05D000233 5.4e-06 56.2 102 28.4
Ca_12985_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.4e-06 56.2 132 28.8
RcHm_v2.0_Chr2g0102081 Rosa chinensis HOM05D000539 ORTHO05D000233 5.4e-06 56.2 123 30.1
RcHm_v2.0_Chr3g0462471 Rosa chinensis HOM05D000539 ORTHO05D000233 5.4e-06 56.2 115 29.6
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 5.4e-06 56.2 100 29.0
SHI42042 Sapria himalayana HOM05D000616 ORTHO05D000233 5.4e-06 56.2 120 30.8
CANSAT56G2121 Cannabis sativa HOM05D000539 ORTHO05D000233 9.2e-06 55.5 102 30.4
Ca_19131_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 9.2e-06 55.5 155 29.7
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 9.2e-06 55.5 98 30.6
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 9.2e-06 55.5 108 26.9
RcHm_v2.0_Chr2g0133581 Rosa chinensis HOM05D020182 ORTHO05D010380 9.2e-06 55.5 122 32.0
SHI25574 Sapria himalayana HOM05D000616 ORTHO05D000233 9.2e-06 55.5 134 26.9
Sed0022893 Sechium edule HOM05D000539 ORTHO05D000233 9.2e-06 55.5 57 47.4


User provided reference genes

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