Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.3e-94 347.1 178 100.0
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.5e-18 97.1 67 77.6
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.5e-18 97.1 61 80.3
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.7e-17 93.6 66 71.2
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 3.1e-16 89.4 101 52.5
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 6.9e-16 88.2 61 70.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.2e-15 87.4 77 57.1
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.5e-15 87.0 55 74.5
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.4e-15 85.9 64 68.8
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.4e-15 85.9 56 73.2
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 5.9e-15 85.1 55 72.7
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 7.7e-15 84.7 77 58.4
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.7e-15 84.7 59 72.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 7.7e-15 84.7 75 57.3
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 7.7e-15 84.7 61 65.6
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 7.7e-15 84.7 61 65.6
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.0e-14 84.3 61 62.3
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.0e-14 84.3 56 71.4
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.3e-14 84.0 59 72.9
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.3e-14 84.0 77 61.0
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.3e-14 84.0 55 76.4
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.3e-14 84.0 55 76.4
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.3e-14 84.0 60 68.3
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.3e-14 84.0 59 69.5
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.3e-14 84.0 55 72.7
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.7e-14 83.6 55 74.5
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.7e-14 83.6 62 67.7
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.7e-14 83.6 61 68.9
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.7e-14 83.6 55 76.4
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.7e-14 83.6 55 74.5
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.7e-14 83.6 55 74.5
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.2e-14 83.2 61 63.9
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.9e-14 82.8 55 72.7
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.9e-14 82.8 55 70.9
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.8e-14 82.4 61 65.6
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 5.0e-14 82.0 55 69.1
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 6.5e-14 81.6 54 74.1
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 6.5e-14 81.6 88 52.3
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.1e-13 80.9 61 62.3
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 1.1e-13 80.9 61 63.9
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.1e-13 80.9 64 62.5
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 1.1e-13 80.9 64 62.5
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.1e-13 80.9 60 66.7
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.4e-13 80.5 61 62.3
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.4e-13 80.5 61 62.3
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 1.4e-13 80.5 88 51.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.4e-13 80.5 66 60.6
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.9e-13 80.1 55 72.7
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.9e-13 80.1 66 60.6
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.9e-13 80.1 62 64.5
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 1.9e-13 80.1 61 62.3
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.9e-13 80.1 61 62.3
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.9e-13 80.1 61 62.3
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 1.9e-13 80.1 55 67.3
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.5e-13 79.7 61 60.7
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 3.2e-13 79.3 61 62.3
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 3.2e-13 79.3 68 58.8
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 3.2e-13 79.3 55 69.1
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 3.2e-13 79.3 59 62.7
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 3.2e-13 79.3 65 55.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 3.2e-13 79.3 60 65.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.2e-13 79.0 55 70.9
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 4.2e-13 79.0 66 57.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 4.2e-13 79.0 55 69.1
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 4.2e-13 79.0 55 69.1
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 4.2e-13 79.0 85 54.1
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 5.5e-13 78.6 55 70.9
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 7.2e-13 78.2 76 55.3
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 7.2e-13 78.2 64 62.5
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 9.4e-13 77.8 55 65.5
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 9.4e-13 77.8 55 65.5
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 9.4e-13 77.8 58 67.2
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 9.4e-13 77.8 55 67.3
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 9.4e-13 77.8 54 75.9
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 1.2e-12 77.4 59 66.1
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 1.2e-12 77.4 55 67.3
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.2e-12 77.4 55 72.7
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.2e-12 77.4 66 57.6
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.6e-12 77.0 55 67.3
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.6e-12 77.0 55 65.5
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.6e-12 77.0 60 60.0
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.6e-12 77.0 55 69.1
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.6e-12 77.0 55 69.1
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.6e-12 77.0 59 59.3
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 2.1e-12 76.6 55 65.5
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.1e-12 76.6 60 63.3
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.7e-12 76.3 55 63.6
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 2.7e-12 76.3 55 67.3
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 4.7e-12 75.5 59 59.3
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 4.7e-12 75.5 59 59.3
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 4.7e-12 75.5 62 59.7
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 6.1e-12 75.1 59 64.4
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 6.1e-12 75.1 59 64.4
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 6.1e-12 75.1 59 64.4
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 6.1e-12 75.1 59 64.4
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 6.1e-12 75.1 59 64.4
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 6.1e-12 75.1 55 63.6
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 8.0e-12 74.7 59 64.4
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 8.0e-12 74.7 92 50.0
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.0e-11 74.3 55 61.8
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.0e-11 74.3 63 57.1
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.4e-11 73.9 59 61.0
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.4e-11 73.9 91 48.4
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 1.4e-11 73.9 65 53.8
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 1.8e-11 73.6 55 61.8
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.3e-11 73.2 64 56.2
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.3e-11 73.2 59 61.0
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 3.0e-11 72.8 59 62.7
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 3.0e-11 72.8 59 62.7
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 3.0e-11 72.8 59 62.7
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 3.0e-11 72.8 59 62.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 3.0e-11 72.8 59 62.7
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.0e-11 72.8 95 44.2
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 3.0e-11 72.8 66 53.0
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.9e-11 72.4 62 54.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.9e-11 72.4 55 63.6
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 3.9e-11 72.4 60 61.7
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 5.2e-11 72.0 65 53.8
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 5.2e-11 72.0 59 62.7
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 8.8e-11 71.2 59 61.0
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.8e-11 71.2 62 53.2
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.1e-10 70.9 62 59.7
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.1e-10 70.9 62 59.7
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.1e-10 70.9 55 67.3
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.1e-10 70.9 58 62.1
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-10 70.5 59 59.3
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.5e-10 70.5 59 59.3
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.5e-10 70.5 59 61.0
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.5e-10 70.5 55 58.2
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.5e-10 70.5 65 52.3
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.5e-10 70.5 59 55.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 2.0e-10 70.1 62 53.2
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 2.0e-10 70.1 51 66.7
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.6e-10 69.7 61 59.0
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 2.6e-10 69.7 51 64.7
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 2.6e-10 69.7 65 50.8
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 2.6e-10 69.7 53 60.4
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 3.3e-10 69.3 55 56.4
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 4.4e-10 68.9 66 53.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.7e-10 68.6 55 58.2
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 7.4e-10 68.2 76 51.3
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 9.7e-10 67.8 55 60.0
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.3e-09 67.4 61 57.4
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.3e-09 67.4 66 51.5
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.3e-09 67.4 72 51.4
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.8e-09 66.2 59 55.9
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 2.8e-09 66.2 61 55.7
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-09 66.2 60 53.3
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 6.3e-09 65.1 55 54.5
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 2.4e-08 63.2 60 55.0
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 2.0e-07 60.1 50 60.0
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.6e-07 59.7 54 55.6
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.7e-06 57.0 43 62.8
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.8e-06 55.8 43 60.5
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.8e-06 55.8 43 60.5
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.8e-06 55.8 54 53.7


User provided reference genes

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