Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030661.2 Cucumis melo HOM05D001070 ORTHO05D002096 1.0e-27 125.9 61 100.0
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
MELO3C008746.2 Cucumis melo HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
MELO3C027943.2 Cucumis melo HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Sed0006483 Sechium edule HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 7.2e-13 76.6 37 100.0
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 2.1e-12 75.1 37 97.3
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 2.1e-12 75.1 37 97.3
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 2.7e-12 74.7 37 97.3
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-12 74.7 36 100.0
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 2.7e-12 74.7 36 100.0
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 2.7e-12 74.7 36 100.0
Manes.11G122808 Manihot esculenta HOM05D001070 ORTHO05D002096 2.7e-12 74.7 36 100.0
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 2.7e-12 74.7 36 100.0
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.7e-12 74.7 37 97.3
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.6e-12 74.3 37 97.3
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.6e-12 74.3 37 97.3
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 3.6e-12 74.3 37 97.3
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 3.6e-12 74.3 37 97.3
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.6e-12 73.9 37 97.3
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.6e-12 73.9 37 97.3
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-12 73.6 43 83.7
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-12 73.6 43 83.7
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-12 73.6 43 83.7
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-12 73.6 43 83.7
Lalb_Chr16g0388601 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-12 73.6 43 83.7
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 6.1e-12 73.6 37 94.6
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 7.9e-12 73.2 36 97.2
Glyma.01G114300 Glycine max HOM05D001070 ORTHO05D002096 7.9e-12 73.2 37 91.9
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 7.9e-12 73.2 37 94.6
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.0e-11 72.8 37 94.6
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10013927m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.0e-11 72.8 36 97.2
CSS0017227 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.4e-11 72.4 36 94.4
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 1.4e-11 72.4 36 97.2
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.3e-11 71.6 37 91.9
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 3.0e-11 71.2 37 89.2
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-11 71.2 36 94.4
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 3.9e-11 70.9 37 89.2
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 3.9e-11 70.9 37 89.2
arahy.Tifrunner.gnm1.ann1.XG10WT Arachis hypogaea HOM05D001070 ORTHO05D002096 3.9e-11 70.9 37 89.2
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 3.9e-11 70.9 36 94.4
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 3.9e-11 70.9 36 94.4
CANSAT78G0545 Cannabis sativa HOM05D001070 ORTHO05D002096 3.9e-11 70.9 36 94.4
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 3.9e-11 70.9 37 86.5
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 5.1e-11 70.5 37 89.2
BolSC43t60809H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-11 70.1 36 94.4
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 6.7e-11 70.1 36 91.7
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-10 69.3 42 78.6
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-10 69.3 42 78.6
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-10 69.3 43 81.4
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-10 68.9 36 88.9
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-10 68.9 36 88.9
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-10 68.9 36 88.9
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-10 68.9 36 88.9
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-10 68.9 36 88.9
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 2.0e-10 68.6 37 83.8
Solyc11g039900.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-10 68.6 37 91.9
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.6e-10 68.2 37 91.9
Gohir.A11G056766 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.4e-10 67.4 36 86.1
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 4.4e-10 67.4 36 88.9
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 7.4e-10 66.6 40 85.0
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 7.4e-10 66.6 36 88.9
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 1.3e-09 65.9 36 88.9
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.2e-09 65.1 42 78.6
Gorai.011G154800 Gossypium raimondii HOM05D001070 ORTHO05D002096 2.2e-09 65.1 36 83.3
EL10Ac2g02883 Beta vulgaris HOM05D001070 ORTHO05D002096 2.8e-09 64.7 36 86.1
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 2.8e-09 64.7 37 91.9
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 2.8e-09 64.7 36 83.3
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 2.8e-09 64.7 37 81.1
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 2.8e-09 64.7 37 81.1
CARHR180900 Cardamine hirsuta HOM05D001070 ORTHO05D002096 4.8e-09 63.9 36 83.3
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 4.8e-09 63.9 37 78.4
Gohir.D10G139001 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.3e-09 63.5 36 80.6
Cpa.g.c35311 Carica papaya HOM05D001070 ORTHO05D002096 8.2e-09 63.2 32 93.8
EL10Ac4g08268 Beta vulgaris HOM05D001070 ORTHO05D002096 1.4e-08 62.4 34 88.2
Nitab4.5_0001574g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.4e-08 62.4 32 93.8
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.1e-08 61.2 32 93.8
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 4.1e-08 60.8 32 90.6
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.1e-08 60.8 36 77.8
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 4.1e-08 60.8 47 68.1
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.3e-08 60.5 36 80.6
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 5.3e-08 60.5 36 80.6
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.9e-08 60.1 37 75.7
RcHm_v2.0_Chr2g0135101 Rosa chinensis HOM05D001070 ORTHO05D002096 6.9e-08 60.1 36 83.3
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 1.2e-07 59.3 36 72.2
SGA_v2.0_scaffold13G06599 Striga asiatica HOM05D000216 ORTHO05D000634 1.2e-07 59.3 41 75.6
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.5e-07 58.9 36 75.0
Gohir.A13G082266 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-07 58.2 42 64.3
MD10G1298900 Malus domestica HOM05D001070 ORTHO05D002096 2.6e-07 58.2 35 74.3
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.5e-07 57.4 28 96.4
Psat0s1160g0280 Pisum sativum HOM05D001070 ORTHO05D002096 4.5e-07 57.4 36 69.4
Solyc05g047440.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.0e-06 56.2 27 100.0
Migut.G00824 Erythranthe guttata HOM05D011856 ORTHO05D013014 2.2e-06 55.1 35 71.4
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund28771 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29267 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29396 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.2e-06 55.1 36 69.4
MD05G1133100 Malus domestica HOM05D001070 ORTHO05D002096 2.9e-06 54.7 35 68.6


User provided reference genes

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