Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030658.2 Cucumis melo HOM05D000507 ORTHO05D169221 7.3e-18 92.8 46 100.0
MELO3C028859.2 Cucumis melo HOM05D000507 ORTHO05D169823 1.3e-14 82.0 45 86.7
MELO3C034700.2 Cucumis melo HOM05D000507 ORTHO05D168609 3.7e-14 80.5 45 84.4
MELO3C032391.2 Cucumis melo HOM05D000507 ORTHO05D166737 3.2e-13 77.4 45 82.2
MELO3C019607.2 Cucumis melo HOM05D000507 ORTHO05D166834 1.2e-12 75.5 45 80.0
MELO3C030386.2 Cucumis melo HOM05D000507 ORTHO05D168167 1.6e-12 75.1 45 77.8
MELO3C034869.2 Cucumis melo HOM05D000507 ORTHO05D166760 3.5e-12 73.9 46 78.3
MELO3C012364.2 Cucumis melo HOM05D000507 ORTHO05D000416 4.6e-12 73.6 44 77.3
MELO3C024852.2 Cucumis melo HOM05D000507 ORTHO05D034925 6.0e-12 73.2 45 77.8
ClCG05G021600 Citrullus lanatus HOM05D000507 ORTHO05D000416 6.6e-11 69.7 45 75.6
MELO3C023356.2 Cucumis melo HOM05D000507 ORTHO05D169504 6.6e-11 69.7 43 79.1
MELO3C034676.2 Cucumis melo HOM05D000507 ORTHO05D171602 8.6e-11 69.3 45 73.3
MELO3C012552.2 Cucumis melo HOM05D000507 ORTHO05D168172 1.1e-10 68.9 45 73.3
CsaV3_5G035630 Cucumis sativus L. HOM05D000507 ORTHO05D000416 1.1e-10 68.9 45 73.3
MELO3C031720.2 Cucumis melo HOM05D000507 ORTHO05D168480 2.5e-10 67.8 45 75.6
Cfa011228 Carpinus fangiana HOM05D000507 ORTHO05D000416 3.6e-09 63.9 43 72.1
CiPaw.13G036500 Carya illinoinensis HOM05D000507 ORTHO05D000416 1.8e-08 61.6 43 69.8
Haze_02600 Corylus avellana HOM05D000507 ORTHO05D000416 1.8e-08 61.6 43 69.8
MELO3C033675.2 Cucumis melo HOM05D000507 ORTHO05D166369 3.1e-08 60.8 36 80.6
ClCG08G008110 Citrullus lanatus HOM05D000507 ORTHO05D000416 1.2e-07 58.9 43 65.1
Potri.008G025500 Populus trichocarpa HOM05D000507 ORTHO05D000416 1.2e-07 58.9 43 62.8
AL3G21990 Arabidopsis lyrata HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
AL6G14260 Arabidopsis lyrata HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
AT3G10560 Arabidopsis thaliana HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
Carub.0006s0355 Capsella rubella HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
Thhalv10022031m.g Eutrema salsugineum HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
Lalb_Chr02g0151391 Lupinus albus HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 60.5
VMungo0720G2560 Vigna mungo HOM05D000507 ORTHO05D000416 1.5e-07 58.5 43 62.8
Phvul.007G104800 Phaseolus vulgaris HOM05D000507 ORTHO05D000416 2.0e-07 58.2 43 62.8
MELO3C019884.2 Cucumis melo HOM05D000507 ORTHO05D000416 2.6e-07 57.8 43 62.8
CsaV3_6G004090 Cucumis sativus L. HOM05D000507 ORTHO05D000416 2.6e-07 57.8 43 65.1
AL6G14280 Arabidopsis lyrata HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
AT5G04660 Arabidopsis thaliana HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
BcaC05g29448 Brassica carinata HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
C05p57480 Brassica napus HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
BraA05t22650Z Brassica rapa HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
Thhalv10020529m.g Eutrema salsugineum HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
Manes.07G091600 Manihot esculenta HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 62.8
Sabra08G0017200 Salix brachista HOM05D000507 ORTHO05D000416 3.4e-07 57.4 41 63.4
Sp3g08860 Schrenkiella parvula HOM05D000507 ORTHO05D000416 3.4e-07 57.4 43 60.5
Aa31LG11G5490 Aethionema arabicum HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 60.5
CARHR208660 Cardamine hirsuta HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 58.1
COL.COLO4_33904 Corchorus olitorius HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 58.1
Eucgr.J01011 Eucalyptus grandis HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 65.1
PGR044G1824 Punica granatum HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 65.1
Sp6g38150 Schrenkiella parvula HOM05D000507 ORTHO05D000416 4.4e-07 57.0 37 67.6
Sed0001507 Sechium edule HOM05D000507 ORTHO05D000416 4.4e-07 57.0 43 62.8
AT5G04630 Arabidopsis thaliana HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 58.1
BcaB01g05908 Brassica carinata HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 58.1
A03p01730 Brassica napus HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 58.1
C03p02140 Brassica napus HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 58.1
BolC5t34405H Brassica oleracea HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 60.5
BraA03t09548Z Brassica rapa HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 58.1
CANSAT56G3984 Cannabis sativa HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 62.8
Thhalv10016078m.g Eutrema salsugineum HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 60.5
Glyma.10G202400 Glycine max HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 60.5
Glyma.20G188000 Glycine max HOM05D000507 ORTHO05D000416 5.8e-07 56.6 43 60.5
Aa31LG3G3430 Aethionema arabicum HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 58.1
BcaNung06523 Brassica carinata HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 58.1
A05p38590 Brassica napus HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 58.1
CARHR208640 Cardamine hirsuta HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 58.1
Nn6g35029 Nelumbo nucifera HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 60.5
Sabra08G0017100 Salix brachista HOM05D000507 ORTHO05D000416 7.6e-07 56.2 43 60.5
Sed0001855 Sechium edule HOM05D000507 ORTHO05D000416 7.6e-07 56.2 37 67.6
BcaNung05853 Brassica carinata HOM05D000507 ORTHO05D000416 9.9e-07 55.8 43 58.1
BolC3t12766H Brassica oleracea HOM05D000507 ORTHO05D000416 9.9e-07 55.8 43 58.1
Carub.0003s0980 Capsella rubella HOM05D000507 ORTHO05D000416 9.9e-07 55.8 43 60.5
Carub.0006s0356 Capsella rubella HOM05D000507 ORTHO05D000416 9.9e-07 55.8 43 60.5
QL04p041297 Quercus lobata HOM05D000507 ORTHO05D000416 9.9e-07 55.8 41 63.4
QL04p041340 Quercus lobata HOM05D000507 ORTHO05D000416 9.9e-07 55.8 41 63.4
arahy.Tifrunner.gnm1.ann1.CNM5E0 Arachis hypogaea HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 60.5
arahy.Tifrunner.gnm1.ann1.E3VCX4 Arachis hypogaea HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 60.5
BcaC06g32174 Brassica carinata HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
BcaC06g32176 Brassica carinata HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
A10p31470 Brassica napus HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
C09p72160 Brassica napus HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
BolC9t59960H Brassica oleracea HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
BraA10t45193Z Brassica rapa HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
Gohir.D10G204800 Gossypium hirsutum HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
Gorai.011G229800 Gossypium raimondii HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 55.8
TWI63G0541 Tripterygium wilfordii HOM05D000507 ORTHO05D000416 1.3e-06 55.5 40 65.0
TAR623G1483 Trochodendron aralioides HOM05D000507 ORTHO05D000416 1.3e-06 55.5 43 58.1
BcaC06g32175 Brassica carinata HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
Cpa.g.sc128.44 Carica papaya HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
Ciclev10031286m.g Citrus clementina HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 60.5
FAN01G0159 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
FAN03G1756 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
Gohir.D12G091200 Gossypium hirsutum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
Gorai.008G098700 Gossypium raimondii HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
Lalb_Chr03g0036361 Lupinus albus HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 55.8
MD02G1247800 Malus domestica HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
Nitab4.5_0000096g0120 Nicotiana tabacum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 60.5
Nitab4.5_0007922g0030 Nicotiana tabacum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 60.5
PSO339G3437 Papaver somniferum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
PSO384G1763 Papaver somniferum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
Solyc05g055400.4 Solanum lycopersicum HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 60.5
Sopen05g033840 Solanum pennellii HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 60.5
Thecc.10G110500 Theobroma cacao HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
TAR284G0003 Trochodendron aralioides HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
TAR369G0104 Trochodendron aralioides HOM05D000507 ORTHO05D000416 1.7e-06 55.1 43 58.1
Gohir.A10G197700 Gossypium hirsutum HOM05D000507 ORTHO05D000416 2.2e-06 54.7 43 55.8
Gohir.A12G078100 Gossypium hirsutum HOM05D000507 ORTHO05D000416 2.2e-06 54.7 43 53.5
Lj3A931T45 Lonicera japonica HOM05D000507 ORTHO05D000416 2.2e-06 54.7 43 58.1
Os10g0514901 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 2.2e-06 54.7 42 59.5
PSO384G0207 Papaver somniferum HOM05D000507 ORTHO05D000416 2.2e-06 54.7 43 58.1
TWI38G1909 Tripterygium wilfordii HOM05D000507 ORTHO05D000416 2.2e-06 54.7 42 61.9
unitig_46.g18616 Utricularia gibba HOM05D000507 ORTHO05D000416 2.2e-06 54.7 43 55.8
HPP92_023004 Vanilla planifolia HOM05D000507 ORTHO05D000416 2.2e-06 54.7 34 70.6
Aqoxy4G02881 Aquilegia oxysepala HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 58.1
AL3G22000 Arabidopsis lyrata HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 55.8
AT3G10570 Arabidopsis thaliana HOM05D000507 ORTHO05D000416 2.9e-06 54.3 37 62.2
FvH4_7g05960 Fragaria vesca HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 53.5
FAN06G3035 Fragaria x ananassa HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 53.5
Lj5g0025187 Lotus japonicus HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 58.1
Sp3g08850 Schrenkiella parvula HOM05D000507 ORTHO05D000416 2.9e-06 54.3 43 55.8
SEGI_21179 Sequoiadendron giganteum HOM05D000507 ORTHO05D000416 2.9e-06 54.3 37 59.5
Atru.chr12.972 Acer truncatum HOM05D000507 ORTHO05D000416 3.8e-06 53.9 34 64.7
CAN.G1550.14 Capsicum annuum HOM05D000507 ORTHO05D000416 3.8e-06 53.9 43 60.5
Duzib128G1695 Durio zibethinus HOM05D000507 ORTHO05D000416 3.8e-06 53.9 43 55.8
Os10g0139700 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 3.8e-06 53.9 43 55.8
Os10g0514700 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 3.8e-06 53.9 42 59.5
PSO443G0012 Papaver somniferum HOM05D000507 ORTHO05D000416 3.8e-06 53.9 40 60.0
Prupe.2G086300 Prunus persica HOM05D000507 ORTHO05D000416 3.8e-06 53.9 43 60.5
GSVIVG01034704001 Vitis vinifera HOM05D000507 ORTHO05D000416 3.8e-06 53.9 43 58.1
Ah.04g163670 Amaranthus hybridus HOM05D000507 ORTHO05D000416 4.9e-06 53.5 40 62.5
RcHm_v2.0_Chr1g0333181 Rosa chinensis HOM05D000507 ORTHO05D000416 4.9e-06 53.5 43 55.8
MELO3C032414.2 Cucumis melo HOM05D000507 ORTHO05D166779 6.4e-06 53.1 33 78.8
Duzib114G0924 Durio zibethinus HOM05D000507 ORTHO05D000416 6.4e-06 53.1 43 55.8
MD07G1068700 Malus domestica HOM05D000507 ORTHO05D000416 6.4e-06 53.1 43 58.1
Os10g0515200 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 6.4e-06 53.1 42 54.8
Os10g0515900 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 6.4e-06 53.1 42 52.4
Peaxi162Scf00004g00019 Petunia axillaris HOM05D000507 ORTHO05D000416 6.4e-06 53.1 43 60.5
PGSC0003DMG400023382 Solanum tuberosum HOM05D000507 ORTHO05D000416 6.4e-06 53.1 43 60.5
SGA_v2.0_scaffold13G06490 Striga asiatica HOM05D000507 ORTHO05D000416 6.4e-06 53.1 37 62.2
MELO3C034930.2 Cucumis melo HOM05D000507 ORTHO05D166557 8.4e-06 52.8 32 75.0
Os10g0514300 Oryza sativa ssp. japonica HOM05D000507 ORTHO05D000416 8.4e-06 52.8 43 53.5
SalBow4G1504 Salvia bowleyana HOM05D000507 ORTHO05D000416 8.4e-06 52.8 43 55.8
Sc20g0001270 Simmondsia chinensis HOM05D000507 ORTHO05D000416 8.4e-06 52.8 38 60.5
unitig_37.g12334 Utricularia gibba HOM05D000507 ORTHO05D000416 8.4e-06 52.8 43 53.5


User provided reference genes

Program Settings