Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030650.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.6e-50 203.0 146 100.0
MELO3C032739.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-17 93.2 57 78.9
MELO3C033823.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-17 93.2 57 77.2
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.2e-17 91.7 72 63.9
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.2e-17 91.7 61 72.1
MELO3C032622.2 Cucumis melo HOM05D007110 ORTHO05D000592 6.7e-17 91.3 56 78.6
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-16 90.1 56 73.2
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.3e-16 89.0 76 60.5
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-16 89.0 54 77.8
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 4.8e-15 85.1 58 62.1
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-14 84.0 50 78.0
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 1.8e-14 83.2 58 60.3
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 2.4e-14 82.8 59 59.3
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 3.1e-14 82.4 64 62.5
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.1e-14 82.0 64 60.9
MELO3C033275.2 Cucumis melo HOM05D013245 ORTHO05D000592 2.6e-13 79.3 60 56.7
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 4.5e-13 78.6 59 54.2
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-12 77.4 56 64.3
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.3e-12 77.0 60 58.3
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 2.2e-12 76.3 60 60.0
MELO3C032086.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-12 76.3 55 70.9
MELO3C035686.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.9e-12 75.9 61 57.4
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-12 75.5 60 58.3
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-11 73.6 57 57.9
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.9e-11 73.2 55 60.0
MELO3C031450.2 Cucumis melo HOM05D037892 ORTHO05D000592 2.5e-11 72.8 57 68.4
MELO3C033921.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-11 72.0 62 59.7
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 5.5e-11 71.6 61 49.2
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.2e-11 71.2 59 55.9
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-10 69.7 56 57.1
MELO3C032671.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.6e-10 68.9 57 63.2
Sed0011074 Sechium edule HOM05D007110 ORTHO05D000592 4.7e-10 68.6 72 47.2
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 8.0e-10 67.8 61 55.7
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 8.0e-10 67.8 61 55.7
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 8.0e-10 67.8 61 55.7
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 1.4e-09 67.0 81 39.5
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 1.8e-09 66.6 61 54.1
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 1.8e-09 66.6 61 54.1
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-09 65.9 61 52.5
MELO3C031423.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-09 65.9 54 64.8
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 3.0e-09 65.9 61 54.1
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 3.0e-09 65.9 61 54.1
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 6.7e-09 64.7 61 42.6
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.2e-08 63.9 58 44.8
MELO3C028238.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.2e-08 63.9 59 44.1
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.5e-08 63.5 61 42.6
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-08 63.5 59 44.1
MELO3C031430.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-08 63.5 56 46.4
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-08 63.5 59 44.1
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-08 63.5 59 42.4
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.0e-08 63.2 59 44.1
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.0e-08 63.2 59 44.1
CSS0026465 Camellia sinensis var. sinensis HOM05D000539 ORTHO05D000233 2.6e-08 62.8 71 36.6
MELO3C029153.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.6e-08 62.8 58 44.8
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.6e-08 62.8 40 77.5
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-08 62.8 74 41.9
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-08 62.4 49 55.1
SHI06731 Sapria himalayana HOM05D007110 ORTHO05D000233 3.3e-08 62.4 60 50.0
SHI14002 Sapria himalayana HOM05D000616 ORTHO05D000233 3.3e-08 62.4 73 43.8
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.4e-08 62.0 60 41.7
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.4e-08 62.0 46 58.7
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.4e-08 62.0 47 57.4
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-08 62.0 60 45.0
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-08 62.0 60 45.0
MELO3C032631.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.7e-08 61.6 63 38.1
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 5.7e-08 61.6 60 46.7
MELO3C032064.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.5e-08 61.2 64 37.5
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 7.5e-08 61.2 61 49.2
MELO3C030851.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-08 60.8 61 49.2
MELO3C033140.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-08 60.8 64 42.2
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-08 60.8 64 42.2
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-07 60.5 51 58.8
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-07 60.5 61 44.3
MELO3C034478.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-07 60.5 36 75.0
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.3e-07 60.5 55 45.5
MELO3C035417.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.3e-07 60.5 59 40.7
MELO3C029881.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.7e-07 60.1 70 37.1
MELO3C032063.2 Cucumis melo HOM05D013245 ORTHO05D000592 1.7e-07 60.1 51 49.0
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.7e-07 60.1 61 41.0
SHI22978 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-07 60.1 52 53.8
SHI29962 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-07 60.1 57 50.9
MELO3C034491.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-07 59.7 56 41.1
MELO3C034500.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-07 59.7 60 41.7
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-07 59.7 60 43.3
SHI19610 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-07 59.7 54 51.9
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-07 59.3 58 44.8
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-07 59.3 64 42.2
SHI19985 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-07 59.3 55 49.1
SHI38698 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-07 59.3 52 51.9
SHI38771 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-07 59.3 58 48.3
CSS0023486 Camellia sinensis var. sinensis HOM05D000616 ORTHO05D000233 3.7e-07 58.9 56 37.5
MELO3C034533.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.7e-07 58.9 61 44.3
SHI19528 Sapria himalayana HOM05D000616 ORTHO05D000233 3.7e-07 58.9 52 51.9
SHI43638 Sapria himalayana HOM05D000616 ORTHO05D000233 3.7e-07 58.9 52 51.9
SHI43952 Sapria himalayana HOM05D000616 ORTHO05D000233 3.7e-07 58.9 52 51.9
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 4.8e-07 58.5 63 46.0
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 4.8e-07 58.5 56 44.6
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 4.8e-07 58.5 56 44.6
SHI42493 Sapria himalayana HOM05D000616 ORTHO05D000233 4.8e-07 58.5 51 52.9
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.3e-07 58.2 41 68.3
MELO3C033304.2 Cucumis melo HOM05D007110 ORTHO05D000592 6.3e-07 58.2 54 44.4
RcHm_v2.0_Chr3g0494801 Rosa chinensis HOM05D000539 ORTHO05D000592 6.3e-07 58.2 56 46.4
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 6.3e-07 58.2 60 45.0
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 6.3e-07 58.2 61 47.5
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 8.2e-07 57.8 56 44.6
SHI36792 Sapria himalayana HOM05D000616 ORTHO05D000062 8.2e-07 57.8 55 49.1
MELO3C027681.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-06 57.4 56 41.1
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 1.1e-06 57.4 56 46.4
SHI00755 Sapria himalayana HOM05D000616 ORTHO05D000233 1.1e-06 57.4 53 49.1
SHI07772 Sapria himalayana HOM05D000616 ORTHO05D000233 1.1e-06 57.4 58 46.6
SHI35917 Sapria himalayana HOM05D000616 ORTHO05D000233 1.1e-06 57.4 52 50.0
SHI37661 Sapria himalayana HOM05D000616 ORTHO05D000233 1.1e-06 57.4 52 51.9
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 1.4e-06 57.0 64 42.2
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.4e-06 57.0 60 43.3
DCAR_031512 Daucus carota HOM05D000539 ORTHO05D000592 1.4e-06 57.0 70 45.7
Rhsim03G0043700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-06 57.0 56 41.1
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-06 57.0 56 41.1
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-06 57.0 56 41.1
RhsimUnG0040200 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-06 57.0 56 41.1
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-06 57.0 61 44.3
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-06 57.0 56 48.2
SHI14115 Sapria himalayana HOM05D000616 ORTHO05D000233 1.4e-06 57.0 52 51.9
SHI22555 Sapria himalayana HOM05D000616 ORTHO05D000233 1.4e-06 57.0 52 50.0
SHI29099 Sapria himalayana HOM05D000616 ORTHO05D000233 1.4e-06 57.0 51 52.9
MELO3C028144.2 Cucumis melo HOM05D013245 ORTHO05D000592 1.8e-06 56.6 37 59.5
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.8e-06 56.6 47 51.1
MELO3C034305.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-06 56.6 64 39.1
SHI42234 Sapria himalayana HOM05D000616 ORTHO05D000233 1.8e-06 56.6 55 49.1
SHI14839 Sapria himalayana HOM05D000616 ORTHO05D000233 2.4e-06 56.2 54 48.1
ECA232G2064 Erigeron canadensis HOM05D000539 ORTHO05D000592 3.1e-06 55.8 62 38.7
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 3.1e-06 55.8 64 32.8
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-06 55.8 65 41.5
SHI36746 Sapria himalayana HOM05D000616 ORTHO05D000233 3.1e-06 55.8 54 48.1
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 4.1e-06 55.5 65 41.5
FAN16G3414 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.1e-06 55.5 64 46.9
SHI27548 Sapria himalayana HOM05D000616 ORTHO05D000233 4.1e-06 55.5 52 50.0
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-06 55.1 49 57.1
MELO3C035129.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.3e-06 55.1 52 42.3
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.0e-06 54.7 80 33.8
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.0e-06 54.7 80 33.8
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.0e-06 54.7 80 33.8
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.0e-06 54.7 80 33.8
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 7.0e-06 54.7 34 64.7
Medtr2g060850 Medicago truncatula HOM05D002644 ORTHO05D000592 7.0e-06 54.7 61 34.4
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 7.0e-06 54.7 56 44.6
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 7.0e-06 54.7 56 44.6
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 9.1e-06 54.3 64 42.2
MELO3C033279.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.1e-06 54.3 61 39.3
FAN28G1985 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.1e-06 54.3 65 46.2
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 9.1e-06 54.3 64 40.6
SHI25573 Sapria himalayana HOM05D000616 ORTHO05D000233 9.1e-06 54.3 54 50.0


User provided reference genes

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