Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 4.0e-143 511.9 366 100.0
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 7.8e-54 215.3 255 83.5
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 2.7e-30 137.1 79 86.1
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 3.5e-30 136.7 78 88.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.3e-29 134.8 84 81.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.7e-29 134.4 85 80.0
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.0e-29 133.7 83 81.9
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.5e-28 131.3 84 78.6
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 2.5e-28 130.6 97 70.1
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.5e-28 130.6 78 84.6
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 3.3e-28 130.2 78 80.8
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.3e-28 130.2 79 81.0
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.3e-28 130.2 79 79.7
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.3e-28 130.2 78 80.8
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 5.6e-28 129.4 84 81.0
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.6e-28 129.4 83 79.5
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 5.6e-28 129.4 83 79.5
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 9.5e-28 128.6 81 80.2
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.2e-27 128.3 78 83.3
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.6e-27 127.9 85 77.6
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.6e-27 127.9 83 78.3
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.1e-27 127.5 77 80.5
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.1e-27 127.5 85 76.5
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 2.1e-27 127.5 83 79.5
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 2.1e-27 127.5 84 78.6
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.8e-27 127.1 86 75.6
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.8e-27 127.1 81 77.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.6e-27 126.7 78 82.1
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.6e-27 126.7 81 76.5
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 6.2e-27 125.9 86 75.6
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 6.2e-27 125.9 97 68.0
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 8.1e-27 125.6 85 74.1
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 8.1e-27 125.6 78 80.8
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.1e-26 125.2 77 83.1
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-26 125.2 85 75.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.4e-26 124.8 86 74.4
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.4e-26 124.8 84 75.0
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.8e-26 124.4 85 74.1
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.3e-26 124.0 80 75.0
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 3.1e-26 123.6 85 74.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 4.0e-26 123.2 85 72.9
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 4.0e-26 123.2 85 75.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.2e-26 122.9 85 74.1
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.2e-26 122.9 85 74.1
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 5.2e-26 122.9 92 68.5
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 6.8e-26 122.5 84 76.2
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 8.9e-26 122.1 87 71.3
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 8.9e-26 122.1 83 75.9
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 2.0e-25 120.9 85 72.9
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 3.4e-25 120.2 86 72.1
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 3.4e-25 120.2 85 71.8
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.4e-25 119.8 85 71.8
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 5.8e-25 119.4 78 75.6
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 7.6e-25 119.0 82 79.3
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 9.9e-25 118.6 85 70.6
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.3e-24 118.2 92 68.5
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.7e-24 117.9 97 60.8
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.2e-24 117.5 78 74.4
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 4.9e-24 116.3 85 71.8
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 4.9e-24 116.3 85 71.8
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 6.4e-24 115.9 85 72.9
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.1e-23 115.2 84 71.4
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.4e-23 114.8 84 73.8
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 2.4e-23 114.0 78 71.8
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 4.1e-23 113.2 84 72.6
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 4.1e-23 113.2 78 73.1
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 7.1e-23 112.5 78 75.6
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 7.1e-23 112.5 78 75.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 9.2e-23 112.1 90 63.3
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.2e-22 111.7 94 63.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.6e-22 111.3 84 71.4
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.1e-22 110.9 82 69.5
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-22 110.9 83 68.7
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.5e-22 110.2 84 70.2
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 3.5e-22 110.2 74 77.0
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.6e-22 109.8 83 67.5
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 6.0e-22 109.4 77 72.7
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 3.9e-21 106.7 90 62.2
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.6e-21 105.9 79 65.8
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 1.1e-20 105.1 83 63.9
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.9e-20 104.4 77 68.8
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.3e-20 103.2 92 56.5
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 2.1e-19 100.9 73 72.6
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 3.6e-19 100.1 72 69.4
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 4.7e-19 99.8 100 62.0
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 8.1e-19 99.0 83 66.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.1e-18 98.6 106 53.8
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-18 98.6 83 68.7
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.4e-18 98.2 81 70.4
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.1e-18 97.1 73 69.9
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 4.0e-18 96.7 76 64.5
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 6.9e-18 95.9 75 68.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.2e-17 95.1 100 61.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 1.2e-17 95.1 103 54.4
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.0e-17 94.4 66 69.7
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 5.8e-17 92.8 76 65.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.2e-16 90.9 79 60.8
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-15 88.6 76 60.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-15 88.6 76 59.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-15 88.6 76 60.5
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-15 88.6 76 60.5
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-15 88.6 76 59.2
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.4e-15 88.2 61 70.5
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.4e-15 87.4 81 60.5
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.6e-14 84.7 83 53.0
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.6e-14 84.7 77 62.3
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.3e-13 81.6 75 60.0
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.7e-13 81.3 84 52.4
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 5.1e-13 79.7 48 79.2
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 2.1e-11 74.3 50 70.0
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 4.8e-11 73.2 77 51.9
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 9.0e-10 68.9 69 53.6
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 9.0e-10 68.9 75 56.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 9.0e-10 68.9 75 56.0
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.2e-09 68.6 85 51.8
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 7.6e-09 65.9 46 71.7
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 3.8e-08 63.5 60 55.0
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 8.4e-08 62.4 60 50.0


User provided reference genes

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