Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 4.7e-241 837.4 412 100.0
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 6.0e-204 714.1 425 85.2
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 3.1e-184 648.7 423 78.3
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 3.0e-155 552.4 410 68.3
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 1.8e-128 463.4 425 59.5
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 1.8e-75 287.3 412 40.8
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 4.0e-67 259.6 431 36.7
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 6.9e-67 258.8 434 37.8
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 2.4e-64 250.4 415 39.0
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 7.9e-63 245.4 423 37.4
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 5.1e-62 242.7 416 38.2
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.5e-61 240.4 415 37.6
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 9.6e-61 238.4 419 36.0
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.6e-60 237.7 409 36.7
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 2.1e-60 237.3 410 36.3
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 3.1e-59 233.4 426 37.1
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 6.9e-59 232.3 430 38.4
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 6.9e-59 232.3 411 36.0
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.2e-58 231.5 418 37.3
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-58 230.7 410 36.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.4e-58 229.9 410 36.1
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 5.8e-58 229.2 420 34.3
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 7.6e-58 228.8 429 37.1
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-57 228.0 406 36.7
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.7e-57 227.6 423 34.5
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.7e-57 227.6 402 37.1
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 6.5e-57 225.7 399 38.1
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.4e-56 224.6 406 36.5
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.4e-56 224.6 406 36.5
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.4e-56 224.6 413 35.1
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.2e-56 223.4 411 35.3
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.2e-56 223.0 411 35.8
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.5e-56 222.6 436 33.5
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.2e-55 221.5 420 32.6
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.6e-55 221.1 420 34.0
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 3.5e-55 219.9 400 36.0
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.6e-55 219.5 405 34.6
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 4.6e-55 219.5 409 34.2
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 5.1e-54 216.1 412 32.8
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 6.7e-54 215.7 420 35.0
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.1e-53 214.9 424 34.2
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.1e-53 214.9 329 35.3
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 1.9e-53 214.2 457 33.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 3.3e-53 213.4 401 35.2
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 3.3e-53 213.4 417 33.6
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 7.4e-53 212.2 401 34.7
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-51 207.6 429 33.6
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 6.9e-51 205.7 419 34.4
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.0e-49 201.8 425 31.8
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 2.2e-49 200.7 415 32.3
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 5.0e-49 199.5 423 32.9
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 5.0e-49 199.5 406 34.0
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.4e-48 198.0 409 30.8
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.4e-48 198.0 410 32.7
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.6e-47 194.5 323 35.3
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.6e-47 194.5 554 29.2
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 3.6e-47 193.4 419 31.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.3e-46 190.7 419 33.2
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-46 190.7 420 32.1
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 3.0e-46 190.3 402 34.1
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.9e-46 189.9 423 30.5
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 6.7e-46 189.1 407 33.9
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.5e-45 188.0 419 32.2
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-45 188.0 419 32.2
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.5e-45 187.2 414 30.4
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 7.4e-45 185.7 445 31.0
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.8e-44 183.7 369 32.8
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.7e-44 183.3 339 35.7
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 3.7e-44 183.3 414 30.0
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 6.3e-44 182.6 402 31.6
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.1e-43 181.8 427 30.9
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.8e-43 181.0 424 30.4
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.8e-43 181.0 444 30.9
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.1e-43 179.9 399 32.1
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 5.3e-43 179.5 412 30.8
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 6.9e-43 179.1 398 32.7
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 9.0e-43 178.7 415 30.1
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-42 178.3 430 29.5
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.9e-42 176.0 414 29.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 2.2e-41 174.1 424 30.9
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.9e-41 173.7 427 29.5
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 2.5e-40 170.6 407 31.0
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.5e-40 170.6 399 29.3
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.5e-40 169.5 358 31.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 4.6e-39 166.4 391 29.9
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 7.9e-39 165.6 399 28.6
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 2.3e-38 164.1 262 38.2
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 2.3e-38 164.1 336 34.8
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 6.7e-38 162.5 339 31.6
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.3e-37 160.2 505 27.3
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.7e-37 159.5 425 30.4
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 9.7e-37 158.7 419 32.2
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.7e-36 157.9 407 30.0
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-35 155.2 464 25.6
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 2.4e-35 154.1 284 35.2
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 4.1e-35 153.3 364 29.4
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 5.3e-35 152.9 381 30.7
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.0e-33 148.7 347 30.0
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 2.9e-33 147.1 444 27.0
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-32 145.2 351 27.9
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 5.5e-32 142.9 414 28.0
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 7.2e-32 142.5 406 28.8
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-30 138.7 408 27.0
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.9e-30 136.7 364 29.7
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-29 135.2 418 26.1
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.2e-28 129.0 168 40.5
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.8e-27 127.9 174 40.8
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-27 127.9 168 39.9
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.8e-27 127.9 318 28.0
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 5.3e-27 126.3 168 39.9
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.3e-27 126.3 168 39.9
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 5.3e-27 126.3 155 40.6
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-26 124.4 168 40.5
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-25 121.7 155 41.9
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.5e-24 118.2 349 26.6
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.2e-23 115.2 158 39.9
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 2.1e-23 114.4 201 37.3
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 2.3e-22 110.9 158 36.7
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 5.2e-22 109.8 176 37.5
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.3e-20 105.1 158 38.0
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 2.2e-20 104.4 164 35.4
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 4.1e-19 100.1 177 33.3
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 5.3e-19 99.8 164 36.0
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 9.1e-19 99.0 193 33.7
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 2.0e-18 97.8 169 34.3
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-18 97.8 168 35.1
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 4.5e-18 96.7 176 33.5
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 5.9e-18 96.3 175 35.4
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.2e-17 94.4 175 34.3
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.0e-17 93.2 167 34.7
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 5.0e-17 93.2 91 50.5
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 8.5e-17 92.4 175 33.7
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 1.9e-16 91.3 224 31.2
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.9e-16 91.3 117 46.2
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 3.2e-16 90.5 175 33.1
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 4.2e-16 90.1 163 31.9
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.2e-16 90.1 344 25.3
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.2e-16 89.4 91 48.4
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 9.4e-16 89.0 171 31.6
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 2.7e-15 87.4 97 45.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 2.7e-15 87.4 101 43.6
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 3.6e-15 87.0 179 30.2
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 1.0e-14 85.5 97 40.2
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 1.4e-14 85.1 93 43.0
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.8e-14 84.7 117 40.2
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 1.8e-14 84.7 182 30.8
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 1.8e-14 84.7 122 37.7
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 3.0e-14 84.0 160 30.6
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 6.8e-14 82.8 175 31.4
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.8e-14 82.4 98 39.8
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.5e-13 81.6 222 31.5
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 2.0e-13 81.3 204 31.4
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 2.6e-13 80.9 99 45.5
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 7.5e-13 79.3 167 31.1
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-12 78.6 160 31.9
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-12 77.8 167 30.5
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-12 77.8 160 30.6
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 2.2e-12 77.8 95 45.3
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 3.7e-12 77.0 116 35.3
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 4.8e-12 76.6 167 30.5
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 6.3e-12 76.3 139 31.7
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.7e-10 70.9 276 25.7
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 1.3e-09 68.6 87 40.2
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 1.9e-08 64.7 101 37.6
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-08 64.7 198 24.7
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 3.2e-08 63.9 81 44.4
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 9.5e-08 62.4 121 31.4
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 2.7e-07 60.8 61 52.5
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 2.7e-07 60.8 73 37.0
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 3.6e-07 60.5 146 27.4
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 6.1e-07 59.7 63 39.7
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.0e-06 58.9 61 41.0
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 8.8e-06 55.8 62 37.1


User provided reference genes

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