Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.3e-52 208.8 114 100.0
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 8.9e-41 170.2 99 94.9
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 5.6e-35 151.0 98 87.8
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 2.6e-24 115.5 89 73.0
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.1e-14 80.9 100 57.0
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.5e-13 78.6 100 57.0
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.5e-13 78.6 102 56.9
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 7.9e-13 77.4 95 49.5
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 5.1e-12 74.7 55 74.5
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 6.7e-12 74.3 74 44.6
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.5e-11 73.2 71 62.0
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.9e-11 72.8 58 75.9
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 7.4e-11 70.9 66 54.5
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 9.6e-11 70.5 58 65.5
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.6e-10 69.7 56 71.4
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 2.1e-10 69.3 83 57.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.8e-10 68.9 58 69.0
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 3.6e-10 68.6 58 65.5
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 4.8e-10 68.2 99 50.5
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 8.1e-10 67.4 94 53.2
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 8.1e-10 67.4 98 52.0
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 8.1e-10 67.4 72 59.7
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.1e-09 67.0 98 49.0
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.1e-09 67.0 64 48.4
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.4e-09 66.6 55 54.5
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 1.4e-09 66.6 68 58.8
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.4e-09 66.6 62 54.8
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.8e-09 66.2 70 51.4
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.4e-09 65.9 54 72.2
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.4e-09 65.9 96 39.6
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.1e-09 65.5 98 44.9
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.1e-09 65.5 100 50.0
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 3.1e-09 65.5 55 76.4
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.0e-09 65.1 98 44.9
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.0e-09 65.1 64 56.2
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 5.3e-09 64.7 64 45.3
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 5.3e-09 64.7 98 51.0
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 9.0e-09 63.9 54 70.4
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 9.0e-09 63.9 98 37.8
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 9.0e-09 63.9 97 47.4
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.2e-08 63.5 55 67.3
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.2e-08 63.5 91 51.6
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.5e-08 63.2 101 50.5
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.6e-08 62.4 47 78.7
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.4e-08 62.0 58 50.0
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 3.4e-08 62.0 49 57.1
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 4.5e-08 61.6 55 47.3
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 4.5e-08 61.6 98 45.9
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 4.5e-08 61.6 88 48.9
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 5.8e-08 61.2 92 42.4
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 5.8e-08 61.2 58 60.3
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 5.8e-08 61.2 50 74.0
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 5.8e-08 61.2 89 49.4
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 5.8e-08 61.2 58 51.7
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.6e-08 60.8 98 38.8
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.6e-08 60.8 98 38.8
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 7.6e-08 60.8 98 38.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 7.6e-08 60.8 90 36.7
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 7.6e-08 60.8 90 36.7
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 7.6e-08 60.8 73 43.8
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 9.9e-08 60.5 61 49.2
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 9.9e-08 60.5 58 56.9
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.3e-07 60.1 98 39.8
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.3e-07 60.1 73 54.8
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 1.3e-07 60.1 73 42.5
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.7e-07 59.7 98 41.8
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.2e-07 59.3 59 52.5
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.2e-07 59.3 58 46.6
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 2.2e-07 59.3 58 48.3
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 2.9e-07 58.9 71 42.3
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.9e-07 58.9 63 58.7
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.9e-07 58.9 58 60.3
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 3.8e-07 58.5 52 51.9
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.8e-07 58.5 103 38.8
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.8e-07 58.5 95 42.1
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.8e-07 58.5 94 36.2
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.8e-07 58.5 94 36.2
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 3.8e-07 58.5 104 44.2
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 3.8e-07 58.5 75 40.0
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 3.8e-07 58.5 75 40.0
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.8e-07 58.5 48 54.2
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 4.9e-07 58.2 48 68.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 4.9e-07 58.2 75 38.7
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 6.4e-07 57.8 56 62.5
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.4e-07 57.8 54 46.3
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 8.4e-07 57.4 48 64.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 8.4e-07 57.4 98 46.9
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 8.4e-07 57.4 107 43.0
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.4e-06 56.6 49 53.1
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.4e-06 56.6 53 54.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.4e-06 56.6 97 47.4
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.4e-06 56.6 100 46.0
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.9e-06 56.2 58 46.6
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.9e-06 56.2 48 70.8
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.9e-06 56.2 59 47.5
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.4e-06 55.8 48 52.1
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.4e-06 55.8 98 38.8
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.2e-06 55.5 61 45.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 3.2e-06 55.5 48 68.8
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.2e-06 55.5 48 68.8
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.2e-06 55.5 98 44.9
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 3.2e-06 55.5 60 45.0
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 4.2e-06 55.1 56 48.2
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.2e-06 55.1 98 44.9
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.2e-06 55.1 98 44.9
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 4.2e-06 55.1 52 50.0
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.1e-06 54.3 48 66.7
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.3e-06 53.9 56 46.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 9.3e-06 53.9 56 46.4
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.3e-06 53.9 56 46.4
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 9.3e-06 53.9 107 41.1
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 9.3e-06 53.9 59 54.2


User provided reference genes

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