Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 0.0e+00 1555.0 823 100.0
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 0.0e+00 1145.6 805 81.5
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.5e-302 1042.0 802 75.7
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.3e-254 881.7 805 65.8
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 1.1e-111 408.7 811 40.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 9.1e-111 405.6 809 37.0
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 4.5e-110 403.3 818 36.4
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 7.7e-110 402.5 854 39.0
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.3e-106 391.0 827 37.0
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 7.0e-103 379.4 801 38.1
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.2e-102 378.6 817 36.4
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 1.8e-98 364.8 746 37.1
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 3.7e-96 357.1 808 34.2
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 3.7e-96 357.1 931 34.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 2.4e-95 354.4 804 38.1
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 5.4e-95 353.2 802 35.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.0e-94 351.3 814 35.1
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 5.9e-94 349.7 829 35.5
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 7.7e-94 349.4 792 34.1
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.3e-93 348.6 812 37.1
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 2.1e-91 341.3 806 34.1
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 8.0e-91 339.3 817 33.5
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.4e-90 338.6 794 37.3
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 9.8e-89 332.4 804 34.6
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.3e-88 332.0 811 33.4
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.9e-88 330.1 813 33.5
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 2.3e-85 321.2 801 32.2
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 5.0e-85 320.1 808 33.3
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 4.3e-84 317.0 801 32.1
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 3.6e-83 313.9 769 34.1
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 7.0e-79 299.7 822 33.9
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 7.0e-79 299.7 822 33.9
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 2.0e-78 298.1 736 32.7
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.0e-78 298.1 832 35.6
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 2.0e-78 298.1 799 33.0
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.5e-76 292.0 742 32.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 1.9e-76 291.6 795 34.3
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 5.6e-76 290.0 805 33.9
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.2e-75 288.9 925 32.0
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 8.0e-75 286.2 730 31.8
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 8.9e-74 282.7 733 31.8
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.0e-73 281.6 796 32.0
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 6.4e-72 276.6 795 31.3
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 3.2e-71 274.2 636 34.3
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 9.2e-71 272.7 744 32.8
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.0e-69 269.2 799 31.4
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 1.1e-68 265.8 804 31.0
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.1e-68 265.8 803 31.8
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.9e-68 265.0 795 31.9
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 3.3e-68 264.2 789 32.2
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.2e-67 262.3 832 29.3
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.1e-67 261.5 789 32.1
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 4.7e-67 260.4 767 30.1
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 8.1e-67 259.6 796 30.5
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 8.1e-67 259.6 796 30.5
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 8.1e-67 259.6 796 30.5
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.1e-66 259.2 794 29.3
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.2e-65 255.8 811 31.2
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 3.4e-65 254.2 888 28.4
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 4.4e-65 253.8 802 32.3
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.3e-64 252.3 891 29.1
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 3.7e-64 250.8 812 31.2
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.2e-62 245.7 734 31.3
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.6e-62 245.4 805 31.2
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.5e-60 238.8 801 32.7
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.9e-60 238.4 811 29.1
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 1.6e-59 235.3 808 31.1
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.5e-57 228.8 811 29.5
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 3.8e-56 224.2 368 41.6
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.4e-55 221.5 734 28.9
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 3.2e-55 221.1 732 27.9
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 9.2e-55 219.5 867 29.0
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.6e-54 218.8 802 29.3
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 1.1e-52 212.6 750 28.7
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.5e-52 212.2 733 28.1
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.9e-52 211.8 561 30.8
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.3e-52 211.1 735 27.1
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 2.8e-51 208.0 876 28.3
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 8.1e-51 206.5 796 28.6
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 6.9e-50 203.4 662 28.5
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.0e-49 201.8 378 38.1
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 4.4e-49 200.7 739 27.7
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.1e-46 191.8 794 28.6
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.2e-40 171.8 569 27.2
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 5.4e-39 167.2 725 27.0
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.3e-37 162.5 456 32.5
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.5e-36 159.1 303 37.3
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 5.8e-33 147.1 138 62.3
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 8.4e-32 143.3 424 37.7
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 8.4e-32 143.3 856 24.4
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 2.1e-30 138.7 302 33.4
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 3.9e-29 134.4 222 40.1
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 3.2e-23 114.8 421 26.6
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.2e-22 112.8 476 28.6
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 6.7e-21 107.1 241 37.3
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.3e-20 104.8 290 31.7
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 4.8e-19 100.9 741 24.0
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 4.1e-18 97.8 176 46.6
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 5.3e-18 97.4 139 46.0
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.0e-17 95.5 383 29.5
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 4.5e-17 94.4 211 31.3
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.7e-16 92.4 139 43.2
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 3.8e-16 91.3 262 29.0
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.5e-15 88.6 139 43.9
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 3.2e-15 88.2 124 46.0
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.7e-14 85.1 318 34.6
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 2.5e-12 78.6 328 27.1
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.4e-10 72.8 117 37.6
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 1.8e-10 72.4 161 37.3
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 1.7e-08 65.9 152 30.9
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 5.5e-07 60.8 375 25.1
Duzib084G0453 Durio zibethinus HOM05D006140 ORTHO05D007834 7.2e-07 60.5 95 42.1
TAR629G2830 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.6e-06 59.3 158 39.9


User provided reference genes

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