Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.7e-131 470.7 241 100.0
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.8e-118 428.3 249 88.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.1e-100 369.4 240 75.8
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.1e-96 357.1 237 78.5
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.6e-84 315.5 239 67.4
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 8.4e-81 304.3 238 65.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 8.7e-70 267.7 238 57.6
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.1e-68 261.2 231 54.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.4e-67 260.4 238 54.2
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.0e-67 258.8 238 55.5
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 6.9e-67 258.1 238 53.8
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 6.9e-67 258.1 238 55.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.5e-66 256.9 229 55.0
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.6e-66 256.1 233 54.9
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.4e-66 255.8 238 55.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 4.4e-66 255.4 238 54.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 4.9e-65 251.9 239 53.6
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 6.4e-65 251.5 238 52.5
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 6.4e-65 251.5 238 52.5
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 8.4e-65 251.1 238 54.2
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.2e-64 249.2 236 51.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.2e-64 249.2 241 54.8
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 3.2e-64 249.2 242 53.7
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.2e-63 247.3 236 51.7
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.2e-63 247.3 236 51.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.6e-63 246.9 239 54.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.1e-63 246.5 241 51.5
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.5e-63 245.7 235 53.2
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.6e-63 245.4 239 54.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 6.0e-63 245.0 238 50.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.3e-62 243.8 235 52.3
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.0e-62 242.7 233 53.2
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.0e-62 242.7 241 50.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.0e-62 242.7 241 50.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.9e-62 242.3 241 53.5
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 8.7e-62 241.1 235 51.5
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-61 240.7 238 49.2
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.5e-61 239.6 231 50.2
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.5e-61 239.6 239 50.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.3e-61 239.2 235 54.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 3.3e-61 239.2 231 50.6
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 4.3e-61 238.8 222 54.5
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.1e-60 236.5 231 50.2
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.8e-60 236.1 238 52.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 4.8e-60 235.3 231 50.6
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 6.2e-60 235.0 237 48.1
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.4e-59 233.0 233 52.8
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.3e-59 231.9 235 49.4
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.2e-58 230.7 233 52.4
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.0e-58 229.9 258 46.9
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.6e-58 229.6 235 48.9
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.2e-57 226.5 235 50.2
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 5.5e-56 221.9 220 51.4
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 7.1e-56 221.5 239 47.3
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 9.3e-56 221.1 239 46.9
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.6e-55 220.3 225 48.4
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.5e-55 219.2 265 44.9
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 8.7e-54 214.5 195 56.4
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.9e-53 213.4 240 43.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.6e-52 210.3 198 51.5
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.1e-52 209.9 239 46.0
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.2e-52 208.4 207 51.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.1e-51 207.6 238 43.7
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.4e-51 207.2 195 51.8
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.8e-51 206.8 238 43.3
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.9e-51 204.9 220 47.7
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 9.0e-51 204.5 238 43.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.5e-50 203.8 238 42.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.5e-50 203.8 235 43.4
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.5e-50 203.8 238 42.4
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.5e-50 203.8 235 43.4
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 2.6e-50 203.0 195 52.3
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.6e-50 203.0 198 52.0
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 4.5e-50 202.2 238 42.9
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.5e-50 202.2 240 45.0
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 5.8e-50 201.8 238 43.3
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 5.8e-50 201.8 237 45.6
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.7e-49 200.3 195 50.8
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.7e-49 200.3 235 42.6
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.2e-49 199.9 240 44.2
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 2.9e-49 199.5 225 47.6
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.9e-49 199.5 210 49.5
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.5e-48 196.4 231 42.9
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.5e-48 196.4 238 42.0
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.2e-48 196.1 258 45.3
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 5.1e-46 188.7 195 48.7
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 8.2e-44 181.4 200 49.0
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.3e-41 174.1 241 41.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.3e-41 174.1 294 36.7
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-41 172.9 238 40.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.2e-40 169.5 195 45.1
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 9.3e-40 167.9 238 41.6
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-39 167.2 233 39.9
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.1e-39 166.8 185 46.5
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 6.7e-38 161.8 237 39.7
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.1e-37 161.0 181 46.4
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 5.7e-37 158.7 235 37.0
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-35 152.5 238 37.0
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.3e-35 152.1 273 38.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-35 151.8 232 36.2
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.7e-34 148.3 241 35.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-33 147.9 231 38.1
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.1e-32 144.4 155 52.3
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 9.4e-32 141.4 167 47.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-27 126.3 229 34.1
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-27 125.9 236 32.6
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-26 124.4 228 32.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.7e-25 120.6 106 51.9
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 2.2e-25 120.2 108 49.1
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-24 116.7 236 30.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-24 116.7 201 33.3
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.2e-24 115.9 117 50.4
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 5.5e-24 115.5 147 39.5
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.8e-22 110.5 237 32.1
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.1e-21 107.8 123 45.5
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-20 104.0 184 37.5
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.7e-20 102.8 108 44.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-19 99.4 209 35.9
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.5e-18 95.9 108 42.6
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 4.5e-18 95.9 108 42.6
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.1e-15 85.5 107 37.4
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 8.0e-15 85.1 109 44.0
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 4.0e-14 82.8 106 41.5
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 4.4e-13 79.3 106 32.1
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.7e-12 77.4 108 35.2
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-11 74.3 71 45.1
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-11 73.2 107 36.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.2e-09 67.0 171 31.0
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 8.5e-09 65.1 71 42.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 8.5e-09 65.1 71 42.3
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.4e-08 61.6 72 37.5
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 9.4e-08 61.6 113 36.3


User provided reference genes

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