Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029940.2 Cucumis melo HOM05D000172 ORTHO05D171503 1.9e-110 402.5 208 100.0
MELO3C018487.2 Cucumis melo HOM05D000172 ORTHO05D000781 1.5e-17 94.0 56 89.3
ClCG02G006410 Citrullus lanatus HOM05D000172 ORTHO05D000781 3.6e-16 89.4 48 95.8
CsaV3_7G008200 Cucumis sativus L. HOM05D000172 ORTHO05D000781 1.1e-15 87.8 56 83.9
Sed0009779 Sechium edule HOM05D000172 ORTHO05D000781 5.3e-15 85.5 48 89.6
THA.LOC104807237 Tarenaya hassleriana HOM05D000172 ORTHO05D000781 4.6e-11 72.4 47 78.7
Ciclev10028553m.g Citrus clementina HOM05D000172 ORTHO05D000781 6.0e-11 72.0 63 60.3
TPR.G3257 Trifolium pratense HOM05D000172 ORTHO05D000781 7.9e-11 71.6 72 54.2
Atru.chr5.2514 Acer truncatum HOM05D000172 ORTHO05D000781 1.0e-10 71.2 47 80.9
Aa31LG8G13080 Aethionema arabicum HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
AL3G46940 Arabidopsis lyrata HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
AT2G15230 Arabidopsis thaliana HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
BcaB03g16245 Brassica carinata HOM05D000172 ORTHO05D000781 1.3e-10 70.9 56 66.1
BcaC06g36039 Brassica carinata HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
A07p05390 Brassica napus HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
C07p08650 Brassica napus HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
BolC7t41277H Brassica oleracea HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
BraA07t28333Z Brassica rapa HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
CARHR105620 Cardamine hirsuta HOM05D000172 ORTHO05D000781 1.3e-10 70.9 47 76.6
Carub.0003s2907 Capsella rubella HOM05D000172 ORTHO05D000781 2.3e-10 70.1 58 63.8
PGR142G0361 Punica granatum HOM05D000172 ORTHO05D000781 3.0e-10 69.7 58 67.2
Haze_10181 Corylus avellana HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 76.6
Thhalv10022719m.g Eutrema salsugineum HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 74.5
Glyma.20G127800 Glycine max HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 74.5
Gohir.A12G021700 Gossypium hirsutum HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 76.6
Gohir.D12G022200 Gossypium hirsutum HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 76.6
Gorai.008G022600 Gossypium raimondii HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 76.6
Thecc.02G109100 Theobroma cacao HOM05D000172 ORTHO05D000781 3.9e-10 69.3 47 76.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.9e-10 69.3 47 74.5
Cfa004588 Carpinus fangiana HOM05D000172 ORTHO05D000781 5.1e-10 68.9 47 74.5
Manes.07G070900 Manihot esculenta HOM05D000172 ORTHO05D000781 5.1e-10 68.9 47 78.7
Phvul.007G039100 Phaseolus vulgaris HOM05D000172 ORTHO05D000781 5.1e-10 68.9 47 72.3
AUR62010317 Chenopodium quinoa HOM05D000172 ORTHO05D000781 6.7e-10 68.6 78 51.3
AUR62039069 Chenopodium quinoa HOM05D000172 ORTHO05D000781 6.7e-10 68.6 76 52.6
arahy.Tifrunner.gnm1.ann1.5497SD Arachis hypogaea HOM05D000172 ORTHO05D000781 8.7e-10 68.2 47 72.3
arahy.Tifrunner.gnm1.ann1.H077MW Arachis hypogaea HOM05D000172 ORTHO05D000781 8.7e-10 68.2 47 72.3
Cpa.g.sc106.100 Carica papaya HOM05D000172 ORTHO05D000781 8.7e-10 68.2 47 74.5
Duzib132G0167 Durio zibethinus HOM05D000172 ORTHO05D000781 8.7e-10 68.2 47 74.5
Medtr1g107330 Medicago truncatula HOM05D000172 ORTHO05D000781 1.1e-09 67.8 54 68.5
Sp3g28470 Schrenkiella parvula HOM05D000172 ORTHO05D000781 1.1e-09 67.8 47 72.3
Lalb_Chr06g0165421 Lupinus albus HOM05D000172 ORTHO05D000781 1.9e-09 67.0 47 70.2
Glyma.10G262850 Glycine max HOM05D000172 ORTHO05D000781 2.5e-09 66.6 47 70.2
CiPaw.05G012100 Carya illinoinensis HOM05D000172 ORTHO05D000781 3.3e-09 66.2 47 74.5
COL.COLO4_32584 Corchorus olitorius HOM05D000172 ORTHO05D000781 3.3e-09 66.2 47 72.3
Migut.B00393 Erythranthe guttata HOM05D000172 ORTHO05D000781 3.3e-09 66.2 47 74.5
Psat6g217800 Pisum sativum HOM05D000172 ORTHO05D000781 3.3e-09 66.2 47 68.1
RcHm_v2.0_Chr6g0254931 Rosa chinensis HOM05D000172 ORTHO05D000781 4.3e-09 65.9 47 72.3
Prupe.8G135900 Prunus persica HOM05D000172 ORTHO05D000781 5.6e-09 65.5 47 72.3
Ca_11069_v3 Cicer arietinum L. HOM05D000172 ORTHO05D000781 7.4e-09 65.1 47 70.2
TWI79G1031 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 7.4e-09 65.1 47 72.3
FvH4_2g05050 Fragaria vesca HOM05D000172 ORTHO05D000781 9.6e-09 64.7 47 70.2
FAN20G3184 Fragaria x ananassa HOM05D000172 ORTHO05D000781 9.6e-09 64.7 47 70.2
Hund06313 Selenicereus undatus HOM05D000172 ORTHO05D000781 9.6e-09 64.7 91 48.4
Eucgr.I01102 Eucalyptus grandis HOM05D000172 ORTHO05D000781 1.3e-08 64.3 58 60.3
FAN24G2782 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.3e-08 64.3 47 68.1
Lj5g0008199 Lotus japonicus HOM05D000172 ORTHO05D000781 1.3e-08 64.3 47 72.3
Potri.009G094900 Populus trichocarpa HOM05D000172 ORTHO05D000781 1.3e-08 64.3 47 70.2
Sabra09G0073200 Salix brachista HOM05D000172 ORTHO05D000781 1.3e-08 64.3 47 70.2
CANSAT25G0132 Cannabis sativa HOM05D000172 ORTHO05D000781 1.6e-08 63.9 47 72.3
CANSAT25G3736 Cannabis sativa HOM05D000172 ORTHO05D000781 1.6e-08 63.9 47 72.3
HanXRQChr10g0296971 Helianthus annuus HOM05D000172 ORTHO05D000781 1.6e-08 63.9 63 54.0
Hma1.2p1_0796F.1_g219270 Hydrangea macrophylla HOM05D000172 ORTHO05D000781 2.1e-08 63.5 47 70.2
Sc14g0001870 Simmondsia chinensis HOM05D000172 ORTHO05D000781 2.1e-08 63.5 47 66.0
SGA_v2.0_scaffold225G43067 Striga asiatica HOM05D000172 ORTHO05D000781 2.1e-08 63.5 47 70.2
QL11p033375 Quercus lobata HOM05D000172 ORTHO05D000781 3.7e-08 62.8 47 68.1
GSVIVG01037920001 Vitis vinifera HOM05D000172 ORTHO05D000781 3.7e-08 62.8 63 54.0
MSTRG.16710 Avicennia marina HOM05D000172 ORTHO05D000781 4.8e-08 62.4 47 70.2
Dinv15768 Davidia involucrata HOM05D000172 ORTHO05D000781 4.8e-08 62.4 76 51.3
FAN15G3207 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.8e-08 62.4 47 68.1
FAN27G2874 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.8e-08 62.4 47 68.1
Lj5C214T14 Lonicera japonica HOM05D000172 ORTHO05D000781 4.8e-08 62.4 47 68.1
Actinidia00407 Actinidia chinensis HOM05D000172 ORTHO05D000781 6.2e-08 62.0 47 63.8
DCAR_001651 Daucus carota HOM05D000172 ORTHO05D000781 6.2e-08 62.0 47 70.2
Nn5g30430 Nelumbo nucifera HOM05D000172 ORTHO05D000781 6.2e-08 62.0 63 52.4
EL10Ac9g22267 Beta vulgaris HOM05D000172 ORTHO05D000781 1.4e-07 60.8 47 66.0
ECA234G4284 Erigeron canadensis HOM05D000172 ORTHO05D000781 1.4e-07 60.8 47 66.0
Lsat_1_v5_gn_5_116180 Lactuca sativa HOM05D000172 ORTHO05D000781 1.8e-07 60.5 63 52.4
Lsat_1_v5_gn_5_116261 Lactuca sativa HOM05D000172 ORTHO05D000781 2.4e-07 60.1 63 50.8
MD10G1098600 Malus domestica HOM05D000172 ORTHO05D000781 2.4e-07 60.1 47 66.0
PSO675G8798 Papaver somniferum HOM05D000172 ORTHO05D000781 4.0e-07 59.3 81 46.9
Rhsim11G0159500 Rhododendron simsii HOM05D000172 ORTHO05D000781 4.0e-07 59.3 47 61.7
unitig_0.g101 Utricularia gibba HOM05D000172 ORTHO05D000781 4.0e-07 59.3 47 66.0
vmacro02000 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 4.0e-07 59.3 47 63.8
CSS0020672 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 5.3e-07 58.9 47 61.7
CSS0028991 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 5.3e-07 58.9 47 61.7
Cc02_g19310 Coffea canephora HOM05D000172 ORTHO05D000781 5.3e-07 58.9 56 55.4
Cc02_g19300 Coffea canephora HOM05D000172 ORTHO05D000781 6.9e-07 58.5 47 63.8
Peaxi162Scf00152g00236 Petunia axillaris HOM05D000172 ORTHO05D000781 1.2e-06 57.8 47 63.8
PSO541G5053 Papaver somniferum HOM05D000172 ORTHO05D000781 2.0e-06 57.0 81 44.4
PSO210G7133 Papaver somniferum HOM05D000172 ORTHO05D000781 4.5e-06 55.8 47 63.8
Oeu018583.1 Olea europaea HOM05D000172 ORTHO05D000781 5.8e-06 55.5 47 63.8
Aqoxy6G02848 Aquilegia oxysepala HOM05D000172 ORTHO05D000781 7.6e-06 55.1 58 53.4
Os09g0103100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000781 7.6e-06 55.1 58 50.0
TAR376G1010 Trochodendron aralioides HOM05D000172 ORTHO05D000781 7.6e-06 55.1 47 61.7
SEGI_32303 Sequoiadendron giganteum HOM05D000172 ORTHO05D000781 9.9e-06 54.7 51 54.9
SEGI_36667 Sequoiadendron giganteum HOM05D000172 ORTHO05D000781 9.9e-06 54.7 51 54.9


User provided reference genes

Program Settings