Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 4.6e-55 217.6 107 100.0
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 1.3e-49 199.5 106 93.4
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.0e-14 83.6 103 46.6
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 2.3e-14 82.4 93 49.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.1e-13 80.1 63 63.5
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 3.3e-13 78.6 75 57.3
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.3e-12 76.6 84 52.4
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.6e-12 76.3 63 58.7
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.6e-12 76.3 90 46.7
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.8e-12 75.5 78 51.3
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 4.8e-12 74.7 90 51.1
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 6.2e-12 74.3 90 51.1
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.1e-11 73.6 94 48.9
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 1.8e-11 72.8 75 54.7
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.8e-11 72.8 81 54.3
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.4e-11 72.4 63 55.6
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.1e-11 72.0 93 46.2
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 3.1e-11 72.0 78 48.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 4.0e-11 71.6 64 53.1
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 4.0e-11 71.6 75 49.3
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 6.9e-11 70.9 63 58.7
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 9.0e-11 70.5 63 54.0
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-10 70.1 72 51.4
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.2e-10 70.1 83 50.6
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 1.5e-10 69.7 66 53.0
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.5e-10 69.7 64 53.1
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.5e-10 69.7 92 50.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.5e-10 69.7 63 55.6
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 2.0e-10 69.3 64 60.9
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 2.6e-10 68.9 64 56.2
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 2.6e-10 68.9 110 41.8
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.6e-10 68.9 64 51.6
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.6e-10 68.9 64 51.6
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 2.6e-10 68.9 87 46.0
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.4e-10 68.6 76 48.7
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.4e-10 68.6 64 51.6
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 3.4e-10 68.6 93 46.2
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 3.4e-10 68.6 64 51.6
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.4e-10 68.6 92 48.9
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.4e-10 68.6 92 48.9
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.5e-10 68.2 81 44.4
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.8e-10 67.8 64 51.6
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.6e-10 67.4 72 45.8
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 7.6e-10 67.4 64 50.0
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.0e-09 67.0 72 50.0
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.0e-09 67.0 75 50.7
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.0e-09 67.0 79 44.3
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.0e-09 67.0 95 41.1
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 1.7e-09 66.2 82 42.7
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 2.2e-09 65.9 77 49.4
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-09 65.9 101 43.6
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 2.2e-09 65.9 63 50.8
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.9e-09 65.5 90 45.6
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.9e-09 65.5 74 48.6
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.9e-09 64.7 84 45.2
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 6.5e-09 64.3 75 50.7
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 6.5e-09 64.3 85 45.9
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 6.5e-09 64.3 85 45.9
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 8.4e-09 63.9 71 45.1
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.4e-09 63.9 83 48.2
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.4e-09 63.9 83 48.2
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 8.4e-09 63.9 83 48.2
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.1e-08 63.5 91 42.9
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.1e-08 63.5 79 46.8
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 1.1e-08 63.5 63 54.0
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.9e-08 62.8 72 51.4
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.9e-08 62.8 79 45.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 1.9e-08 62.8 72 48.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.9e-08 62.8 78 51.3
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.9e-08 62.8 72 48.6
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 2.5e-08 62.4 62 50.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.5e-08 62.4 63 50.8
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.5e-08 62.4 81 46.9
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.5e-08 62.4 80 43.8
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.5e-08 62.4 78 51.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.5e-08 62.4 79 45.6
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.5e-08 62.4 101 41.6
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-08 62.4 79 46.8
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-08 62.4 79 46.8
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.5e-08 62.4 78 46.2
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.5e-08 62.4 83 47.0
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.5e-08 62.4 88 43.2
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.2e-08 62.0 82 42.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.2e-08 62.0 79 44.3
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.2e-08 62.0 79 44.3
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 3.2e-08 62.0 63 54.0
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 3.2e-08 62.0 76 44.7
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 3.2e-08 62.0 72 48.6
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 3.2e-08 62.0 63 50.8
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.2e-08 61.6 63 49.2
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.2e-08 61.6 81 44.4
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 4.2e-08 61.6 64 50.0
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 4.2e-08 61.6 65 49.2
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.2e-08 61.6 92 45.7
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.5e-08 61.2 63 49.2
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 5.5e-08 61.2 81 43.2
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.5e-08 61.2 80 43.8
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 5.5e-08 61.2 73 50.7
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 5.5e-08 61.2 71 46.5
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 5.5e-08 61.2 66 48.5
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 5.5e-08 61.2 80 43.8
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.1e-08 60.8 63 49.2
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 7.1e-08 60.8 101 42.6
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.1e-08 60.8 101 42.6
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.1e-08 60.8 75 49.3
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.1e-08 60.8 81 44.4
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.1e-08 60.8 78 43.6
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 9.3e-08 60.5 101 41.6
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 9.3e-08 60.5 66 53.0
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 9.3e-08 60.5 70 47.1
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 9.3e-08 60.5 75 50.7
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 9.3e-08 60.5 66 50.0
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 9.3e-08 60.5 64 53.1
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.2e-07 60.1 65 47.7
COL.COLO4_26960 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.2e-07 60.1 64 50.0
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.2e-07 60.1 95 41.1
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.2e-07 60.1 95 41.1
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 75 52.0
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 76 47.4
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 1.2e-07 60.1 70 45.7
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.2e-07 60.1 100 41.0
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.2e-07 60.1 75 50.7
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 1.2e-07 60.1 60 55.0
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 1.6e-07 59.7 79 39.2
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.6e-07 59.7 85 43.5
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.6e-07 59.7 65 46.2
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.6e-07 59.7 75 48.0
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.6e-07 59.7 76 47.4
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.6e-07 59.7 73 49.3
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 2.1e-07 59.3 89 38.2
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.1e-07 59.3 67 52.2
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.7e-07 58.9 101 42.6
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.7e-07 58.9 74 50.0
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 2.7e-07 58.9 62 45.2
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.7e-07 58.9 75 48.0
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.5e-07 58.5 104 37.5
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 3.5e-07 58.5 69 44.9
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 4.6e-07 58.2 100 39.0
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 4.6e-07 58.2 64 48.4
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 4.6e-07 58.2 64 50.0
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 4.6e-07 58.2 79 46.8
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 4.6e-07 58.2 75 49.3
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.0e-07 57.8 83 41.0
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 6.0e-07 57.8 84 46.4
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 7.9e-07 57.4 62 54.8
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 7.9e-07 57.4 72 43.1
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 1.3e-06 56.6 65 47.7
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 1.3e-06 56.6 63 44.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 1.3e-06 56.6 89 43.8
EL10Ac8g18510 Beta vulgaris HOM05D003277 ORTHO05D003275 1.8e-06 56.2 59 55.9
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 1.8e-06 56.2 64 48.4
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 66 45.5
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 1.8e-06 56.2 68 48.5
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-06 56.2 64 48.4
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 62 50.0
Sed0021859 Sechium edule HOM05D023703 ORTHO05D025099 1.8e-06 56.2 80 41.2
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 1.8e-06 56.2 62 50.0
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.8e-06 56.2 64 48.4
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 2.3e-06 55.8 78 42.3
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 2.3e-06 55.8 75 48.0
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 2.3e-06 55.8 72 43.1
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 2.3e-06 55.8 64 48.4
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 2.3e-06 55.8 62 53.2
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.0e-06 55.5 74 41.9
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.0e-06 55.5 63 47.6
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 3.0e-06 55.5 93 39.8
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 3.9e-06 55.1 81 37.0
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 5.1e-06 54.7 63 54.0
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 5.1e-06 54.7 62 53.2
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.7e-06 54.3 65 46.2


User provided reference genes

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