Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029672.2 Cucumis melo HOM05D003298 ORTHO05D003827 2.4e-33 144.8 69 100.0
Cpa.g.sc6.9 Carica papaya HOM05D003298 ORTHO05D003827 6.2e-13 77.0 46 80.4
MELO3C007641.2 Cucumis melo HOM05D003298 ORTHO05D003827 6.2e-13 77.0 46 80.4
CsaV3_6G044180 Cucumis sativus L. HOM05D003298 ORTHO05D003827 6.2e-13 77.0 46 80.4
ClCG01G017640 Citrullus lanatus HOM05D003298 ORTHO05D003827 1.4e-12 75.9 46 78.3
Sed0023270 Sechium edule HOM05D003298 ORTHO05D003827 3.1e-12 74.7 46 78.3
Actinidia10204 Actinidia chinensis HOM05D003298 ORTHO05D003827 4.0e-12 74.3 46 76.1
CSS0022661 Camellia sinensis var. sinensis HOM05D003298 ORTHO05D003827 4.0e-12 74.3 46 76.1
CANSAT01G1569 Cannabis sativa HOM05D003298 ORTHO05D003827 4.0e-12 74.3 46 76.1
Oeu014251.1 Olea europaea HOM05D003298 ORTHO05D003827 4.0e-12 74.3 46 76.1
CSS0029512 Camellia sinensis var. sinensis HOM05D003298 ORTHO05D003827 5.3e-12 73.9 46 76.1
Solyc02g092270.3 Solanum lycopersicum HOM05D003298 ORTHO05D003827 5.3e-12 73.9 46 76.1
Sopen02g036850 Solanum pennellii HOM05D003298 ORTHO05D003827 5.3e-12 73.9 46 76.1
PSO170G5648 Papaver somniferum HOM05D003298 ORTHO05D003827 6.9e-12 73.6 46 76.1
Duzib264G0522 Durio zibethinus HOM05D003298 ORTHO05D003827 9.0e-12 73.2 46 76.1
Peaxi162Scf00548g00317 Petunia axillaris HOM05D003298 ORTHO05D003827 9.0e-12 73.2 46 73.9
Lj5g0014523 Lotus japonicus HOM05D003298 ORTHO05D003827 1.2e-11 72.8 46 76.1
Nitab4.5_0004242g0010 Nicotiana tabacum HOM05D003298 ORTHO05D003827 1.2e-11 72.8 46 73.9
TAR628G0686 Trochodendron aralioides HOM05D003298 ORTHO05D003827 1.2e-11 72.8 46 73.9
Aa31LG1G16140 Aethionema arabicum HOM05D003298 ORTHO05D003827 1.5e-11 72.4 46 71.7
Duzib147G0123 Durio zibethinus HOM05D003298 ORTHO05D003827 1.5e-11 72.4 46 76.1
Nitab4.5_0000142g0170 Nicotiana tabacum HOM05D003298 ORTHO05D003827 1.5e-11 72.4 46 73.9
Potri.007G005100 Populus trichocarpa HOM05D003298 ORTHO05D003827 1.5e-11 72.4 46 73.9
QL06p039518 Quercus lobata HOM05D003298 ORTHO05D003827 1.5e-11 72.4 46 71.7
CAN.G1075.44 Capsicum annuum HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 73.9
CiPaw.01G004000 Carya illinoinensis HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
DCAR_012818 Daucus carota HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 73.9
Thhalv10005067m.g Eutrema salsugineum HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
Gohir.A11G048600 Gossypium hirsutum HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
Gohir.D11G052200 Gossypium hirsutum HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
Gorai.007G056600 Gossypium raimondii HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
PSO017G4249 Papaver somniferum HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 73.9
Rhsim06G0062700 Rhododendron simsii HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 73.9
Sp2g29060 Schrenkiella parvula HOM05D003298 ORTHO05D003827 2.0e-11 72.0 46 71.7
Aqoxy6G02591 Aquilegia oxysepala HOM05D003298 ORTHO05D003827 2.6e-11 71.6 46 73.9
Migut.L00218 Erythranthe guttata HOM05D003298 ORTHO05D003827 2.6e-11 71.6 46 71.7
Hma1.2p1_0210F.1_g089430 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 3.4e-11 71.2 46 71.7
Lsat_1_v5_gn_9_75781 Lactuca sativa HOM05D003298 ORTHO05D003827 3.4e-11 71.2 46 71.7
Sabra07G0003700 Salix brachista HOM05D003298 ORTHO05D003827 3.4e-11 71.2 46 73.9
GSVIVG01002385001 Vitis vinifera HOM05D003298 ORTHO05D003827 3.4e-11 71.2 46 71.7
BcaC04g23237 Brassica carinata HOM05D003298 ORTHO05D003827 4.5e-11 70.9 46 69.6
BraA09t36578Z Brassica rapa HOM05D003298 ORTHO05D003827 4.5e-11 70.9 46 69.6
Manes.13G110900 Manihot esculenta HOM05D003298 ORTHO05D003827 4.5e-11 70.9 46 69.6
TAR381G0335 Trochodendron aralioides HOM05D003298 ORTHO05D003827 4.5e-11 70.9 46 71.7
TAR381G1316 Trochodendron aralioides HOM05D003298 ORTHO05D003827 4.5e-11 70.9 46 71.7
CiPaw.07G174000 Carya illinoinensis HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 71.7
COL.COLO4_11584 Corchorus olitorius HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 69.6
Glyma.05G106100 Glycine max HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 71.7
Lalb_Chr09g0323641 Lupinus albus HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 69.6
Nn5g30611 Nelumbo nucifera HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 69.6
Sc02g0007940 Simmondsia chinensis HOM05D003298 ORTHO05D003827 5.8e-11 70.5 45 71.1
TPR.G24266 Trifolium pratense HOM05D003298 ORTHO05D003827 5.8e-11 70.5 46 71.7
Aqoxy5G00858 Aquilegia oxysepala HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 71.7
AL8G43710 Arabidopsis lyrata HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 69.6
AT5G67590 Arabidopsis thaliana HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 69.6
A09p09250 Brassica napus HOM05D003298 ORTHO05D003827 7.6e-11 70.1 59 61.0
Carub.0008s2688 Capsella rubella HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 69.6
CARHR280000 Cardamine hirsuta HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 69.6
Lj4A71G62 Lonicera japonica HOM05D003298 ORTHO05D003827 7.6e-11 70.1 45 73.3
Oeu013325.3 Olea europaea HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 71.7
QL05p065477 Quercus lobata HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 71.7
RcHm_v2.0_Chr2g0108251 Rosa chinensis HOM05D003298 ORTHO05D003827 7.6e-11 70.1 46 71.7
BolC9t53976H Brassica oleracea HOM05D003298 ORTHO05D003827 9.9e-11 69.7 46 67.4
Potri.002G117800 Populus trichocarpa HOM05D003298 ORTHO05D003827 9.9e-11 69.7 46 69.6
THA.LOC104827660 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 9.9e-11 69.7 46 71.7
BcaB04g20042 Brassica carinata HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 69.6
Cfa004137 Carpinus fangiana HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 67.4
Ca_22102_v3 Cicer arietinum L. HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 71.7
Glyma.17G160400 Glycine max HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 69.6
SalBow3G3650 Salvia bowleyana HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 69.6
Hund05294 Selenicereus undatus HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 67.4
THA.LOC104825783 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 1.3e-10 69.3 47 66.0
VMungo0251G1543 Vigna mungo HOM05D003298 ORTHO05D003827 1.3e-10 69.3 46 71.7
ATR0739G156 Amborella trichopoda HOM05D003298 ORTHO05D003827 1.7e-10 68.9 46 69.6
A06p32830 Brassica napus HOM05D003298 ORTHO05D003827 1.7e-10 68.9 46 69.6
BraA06t26215Z Brassica rapa HOM05D003298 ORTHO05D003827 1.7e-10 68.9 46 69.6
Dinv44947 Davidia involucrata HOM05D003298 ORTHO05D003827 1.7e-10 68.9 46 69.6
FvH4_2g32930 Fragaria vesca HOM05D003298 ORTHO05D003827 1.7e-10 68.9 46 67.4
C09p10810 Brassica napus HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 65.2
CDE02G3189 Ceratophyllum demersum HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 67.4
Dinv26938 Davidia involucrata HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 67.4
Migut.H00342 Erythranthe guttata HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 69.6
Hma1.2p1_0808F.1_g221650 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 67.4
Prupe.6G219700 Prunus persica HOM05D003298 ORTHO05D003827 2.2e-10 68.6 46 67.4
MSTRG.3473 Avicennia marina HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 69.6
BcaNung05865 Brassica carinata HOM05D003298 ORTHO05D003827 2.9e-10 68.2 47 66.0
ECA232G4822 Erigeron canadensis HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 69.6
Medtr4g097160 Medicago truncatula HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 67.4
Nn1g04538 Nelumbo nucifera HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 65.2
Phvul.003G234500 Phaseolus vulgaris HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 69.6
PGR102G3286 Punica granatum HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 69.6
Thecc.01G073400 Theobroma cacao HOM05D003298 ORTHO05D003827 2.9e-10 68.2 46 65.2
vmacro05415 Vaccinium macrocarpon HOM05D003298 ORTHO05D003827 2.9e-10 68.2 53 60.4
Ah.05g167060 Amaranthus hybridus HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 67.4
arahy.Tifrunner.gnm1.ann1.KW5FX2 Arachis hypogaea HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 69.6
arahy.Tifrunner.gnm1.ann1.MLYB46 Arachis hypogaea HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 69.6
MSTRG.15348 Avicennia marina HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 69.6
BcaNung05863 Brassica carinata HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 67.4
BcaNung05868 Brassica carinata HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 67.4
BolC3t18226H Brassica oleracea HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 67.4
ECA232G0962 Erigeron canadensis HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 69.6
Eucgr.I00697 Eucalyptus grandis HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 65.2
HPP92_004383 Vanilla planifolia HOM05D003298 ORTHO05D003827 3.8e-10 67.8 46 67.4
Ciclev10026686m.g Citrus clementina HOM05D003298 ORTHO05D003827 4.9e-10 67.4 46 65.2
Haze_22427 Corylus avellana HOM05D003298 ORTHO05D003827 4.9e-10 67.4 43 72.1
Lsat_1_v5_gn_4_161521 Lactuca sativa HOM05D003298 ORTHO05D003827 4.9e-10 67.4 46 69.6
MD02G1187000 Malus domestica HOM05D003298 ORTHO05D003827 4.9e-10 67.4 46 65.2
MD08G1080900 Malus domestica HOM05D003298 ORTHO05D003827 4.9e-10 67.4 46 65.2
Manes.05G182400 Manihot esculenta HOM05D003298 ORTHO05D003827 4.9e-10 67.4 46 69.6
Rhsim10G0099100 Rhododendron simsii HOM05D003298 ORTHO05D003827 4.9e-10 67.4 50 62.0
FAN24G0284 Fragaria x ananassa HOM05D003298 ORTHO05D003827 6.4e-10 67.0 55 58.2
Lalb_Chr05g0213731 Lupinus albus HOM05D003298 ORTHO05D003827 6.4e-10 67.0 46 65.2
Psat4g081520 Pisum sativum HOM05D003298 ORTHO05D003827 6.4e-10 67.0 46 67.4
CDE04G0469 Ceratophyllum demersum HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 65.2
AUR62022470 Chenopodium quinoa HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 67.4
ECA232G0317 Erigeron canadensis HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 67.4
Gohir.A05G210600 Gossypium hirsutum HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 67.4
HanXRQChr15g0494991 Helianthus annuus HOM05D003298 ORTHO05D003827 8.4e-10 66.6 49 65.3
SGA_v2.0_scaffold15G07465 Striga asiatica HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 65.2
Zm00001eb325880 Zea mays HOM05D003298 ORTHO05D003827 8.4e-10 66.6 46 67.4
Actinidia34533 Actinidia chinensis HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
C03p59640 Brassica napus HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
Cfa013769 Carpinus fangiana HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 69.6
FvH4_1g17800 Fragaria vesca HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
FAN19G0692 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
FAN23G2697 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
FAN26G0508 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
FAN28G0919 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 65.2
HanXRQChr11g0323111 Helianthus annuus HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 69.6
MD15G1298100 Malus domestica HOM05D003298 ORTHO05D003827 1.1e-09 66.2 46 63.0
CsaV3_2G026040 Cucumis sativus L. HOM05D003298 ORTHO05D003827 1.4e-09 65.9 46 67.4
AUR62037418 Chenopodium quinoa HOM05D003298 ORTHO05D003827 1.9e-09 65.5 45 68.9
Haze_15276 Corylus avellana HOM05D003298 ORTHO05D003827 1.9e-09 65.5 44 65.9
FAN15G0046 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.9e-09 65.5 55 56.4
FAN20G2949 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.9e-09 65.5 45 64.4
FAN27G0325 Fragaria x ananassa HOM05D003298 ORTHO05D003827 1.9e-09 65.5 45 64.4
Gohir.D05G213900 Gossypium hirsutum HOM05D003298 ORTHO05D003827 1.9e-09 65.5 46 65.2
Gorai.009G220600 Gossypium raimondii HOM05D003298 ORTHO05D003827 1.9e-09 65.5 46 65.2
THA.LOC104821206 Tarenaya hassleriana HOM05D003298 ORTHO05D003827 1.9e-09 65.5 46 67.4
DCAR_025811 Daucus carota HOM05D003298 ORTHO05D003827 2.4e-09 65.1 54 57.4
Dinv04042 Davidia involucrata HOM05D003298 ORTHO05D003827 2.4e-09 65.1 43 69.8
MBI16_g02459_MAGBIO Magnolia biondii HOM05D003298 ORTHO05D003827 2.4e-09 65.1 53 60.4
Os07g0585800 Oryza sativa ssp. japonica HOM05D003298 ORTHO05D003827 2.4e-09 65.1 46 63.0
Sabra15G0082200 Salix brachista HOM05D003298 ORTHO05D003827 2.4e-09 65.1 49 63.3
TWI56G0806 Tripterygium wilfordii HOM05D003298 ORTHO05D003827 2.4e-09 65.1 46 65.2
CSS0045283 Camellia sinensis var. sinensis HOM05D003298 ORTHO05D003827 3.2e-09 64.7 33 87.9
CANSAT25G0421 Cannabis sativa HOM05D003298 ORTHO05D003827 3.2e-09 64.7 46 63.0
Ciclev10002758m.g Citrus clementina HOM05D003298 ORTHO05D003827 3.2e-09 64.7 46 63.0
COL.COLO4_28494 Corchorus olitorius HOM05D003298 ORTHO05D003827 3.2e-09 64.7 46 65.2
Manes.12G115200 Manihot esculenta HOM05D003298 ORTHO05D000002 3.2e-09 64.7 43 67.4
RcHm_v2.0_Chr6g0309771 Rosa chinensis HOM05D003298 ORTHO05D003827 3.2e-09 64.7 46 60.9
unitig_748.g8592 Utricularia gibba HOM05D003298 ORTHO05D003827 3.2e-09 64.7 46 63.0
GSVIVG01002443001 Vitis vinifera HOM05D003298 ORTHO05D003827 3.2e-09 64.7 41 73.2
TWI12G0106 Tripterygium wilfordii HOM05D003298 ORTHO05D003827 4.2e-09 64.3 46 65.2
Atru.chr3.1021 Acer truncatum HOM05D003298 ORTHO05D003827 5.4e-09 63.9 46 63.0
Prupe.1G421800 Prunus persica HOM05D003298 ORTHO05D003827 5.4e-09 63.9 46 60.9
Lsat_1_v5_gn_3_53440 Lactuca sativa HOM05D003298 ORTHO05D003827 7.1e-09 63.5 44 65.9
Sabra02G0092500 Salix brachista HOM05D003298 ORTHO05D003827 7.1e-09 63.5 42 69.0
Zm00001eb108030 Zea mays HOM05D003298 ORTHO05D003827 7.1e-09 63.5 46 63.0
EL10Ac1g02370 Beta vulgaris HOM05D003298 ORTHO05D003827 9.3e-09 63.2 46 60.9
Atru.chr13.842 Acer truncatum HOM05D003298 ORTHO05D003827 1.2e-08 62.8 52 61.5
Cc07_g07140 Coffea canephora HOM05D003298 ORTHO05D003827 1.2e-08 62.8 46 63.0
Cc07_g07160 Coffea canephora HOM05D003298 ORTHO05D003827 2.1e-08 62.0 46 63.0
MELO3C010798.2 Cucumis melo HOM05D003298 ORTHO05D003827 2.1e-08 62.0 46 60.9
Lj7A107G20 Lonicera japonica HOM05D003298 ORTHO05D003827 2.1e-08 62.0 46 60.9
Sc15g0005640 Simmondsia chinensis HOM05D003298 ORTHO05D003827 3.5e-08 61.2 46 63.0
Cpa.g.sc142.36 Carica papaya HOM05D003298 ORTHO05D003827 6.0e-08 60.5 45 64.4
Nitab4.5_0000497g0130 Nicotiana tabacum HOM05D003298 ORTHO05D003827 6.0e-08 60.5 43 65.1
SEGI_29951 Sequoiadendron giganteum HOM05D003298 ORTHO05D003827 7.9e-08 60.1 46 60.9
Lsat_1_v5_gn_5_11240 Lactuca sativa HOM05D003298 ORTHO05D003827 2.3e-07 58.5 45 62.2
Sabra02G0015400 Salix brachista HOM05D003298 ORTHO05D349226 2.3e-07 58.5 58 50.0
Hma1.2p1_0993F.1_g245285 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 5.1e-07 57.4 35 68.6
AagrBONN_evm.TU.Sc2ySwM_228.4005 Anthoceros agrestis HOM05D003298 ORTHO05D003827 1.9e-06 55.5 46 54.3
CBR_g33921 Chara braunii HOM05D003298 ORTHO05D003827 2.5e-06 55.1 46 54.3
Pp3c8_17050 Physcomitrium patens HOM05D003298 ORTHO05D003827 3.3e-06 54.7 47 51.1
Hma1.2p1_0458F.1_g157070 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 4.3e-06 54.3 31 74.2
Hma1.2p1_0458F.1_g157071 Hydrangea macrophylla HOM05D003298 ORTHO05D003827 4.3e-06 54.3 31 74.2
Pp3c24_19370 Physcomitrium patens HOM05D003298 ORTHO05D003827 5.6e-06 53.9 47 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3991 Anthoceros agrestis HOM05D003298 ORTHO05D003827 9.6e-06 53.1 45 55.6


User provided reference genes

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