Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.4e-43 179.1 83 100.0
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.4e-40 169.1 83 94.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 2.5e-40 168.3 83 92.8
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 2.5e-40 168.3 83 92.8
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.2e-40 167.9 83 91.6
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.2e-40 167.9 83 91.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 4.2e-40 167.5 83 90.4
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 4.2e-40 167.5 83 90.4
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 5.5e-40 167.2 83 89.2
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 89.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 89.2
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 89.2
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 91.6
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 91.6
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 91.6
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 91.6
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 90.4
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 7.2e-40 166.8 83 90.4
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 9.4e-40 166.4 83 91.6
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.2e-39 166.0 83 90.4
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 2.7e-39 164.9 83 89.2
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 3.6e-39 164.5 83 90.4
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 3.6e-39 164.5 83 90.4
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 3.6e-39 164.5 83 90.4
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.6e-39 164.5 83 90.4
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 3.6e-39 164.5 83 88.0
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 4.6e-39 164.1 83 91.6
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 4.6e-39 164.1 83 89.2
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 6.1e-39 163.7 83 89.2
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 6.1e-39 163.7 83 89.2
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 7.9e-39 163.3 83 89.2
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.0e-38 162.9 83 89.2
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.4e-38 162.5 83 86.7
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.8e-38 162.2 83 88.0
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.8e-38 162.2 83 88.0
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.3e-38 161.8 83 88.0
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-38 161.8 83 88.0
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 2.3e-38 161.8 83 89.2
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.3e-38 161.8 83 85.5
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-38 161.4 83 88.0
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 3.0e-38 161.4 83 89.2
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 3.0e-38 161.4 83 89.2
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 3.9e-38 161.0 83 88.0
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 3.9e-38 161.0 84 89.3
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 6.7e-38 160.2 83 89.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 6.7e-38 160.2 83 89.2
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 8.8e-38 159.8 81 88.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 8.8e-38 159.8 81 88.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 8.8e-38 159.8 81 88.9
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 1.1e-37 159.5 83 88.0
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.1e-37 159.5 83 86.7
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.5e-37 159.1 83 86.7
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.0e-37 158.7 83 85.5
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 3.3e-37 157.9 81 87.7
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 4.3e-37 157.5 83 86.7
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 7.4e-37 156.8 83 85.5
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 7.4e-37 156.8 83 85.5
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 9.7e-37 156.4 83 83.1
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 3.7e-36 154.5 83 86.7
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.4e-35 152.5 81 84.0
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.8e-35 152.1 81 82.7
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.4e-35 151.8 83 81.9
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.1e-35 151.4 82 82.9
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 4.1e-35 151.0 83 80.7
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.2e-34 149.4 83 81.9
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 1.5e-34 149.1 75 88.0
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 4.5e-34 147.5 82 80.5
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.3e-33 146.0 82 82.9
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.7e-33 145.6 79 82.3
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.2e-33 145.2 83 80.7
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.2e-33 145.2 75 88.0
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 3.8e-33 144.4 72 91.7
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-32 142.9 83 77.1
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 7.9e-31 136.7 68 91.2
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 1.0e-30 136.3 68 92.6
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.0e-30 136.3 68 92.6
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 1.0e-30 136.3 68 92.6
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-30 136.0 83 75.9
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.4e-30 136.0 83 75.9
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-30 136.0 83 75.9
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-30 136.0 83 75.9
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.9e-30 134.4 83 74.7
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 6.7e-30 133.7 67 92.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.0e-29 132.1 65 90.8
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 3.3e-29 131.3 67 89.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.8e-27 125.6 61 95.1
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.3e-27 124.0 59 93.2
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-27 123.2 83 74.7
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-26 121.7 57 94.7
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.9e-26 120.6 63 85.7
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.0e-25 119.8 63 87.3
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.0e-25 119.8 59 89.8
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.7e-23 111.7 55 92.7
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.1e-23 110.5 58 87.9
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.8e-22 106.7 58 84.5
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 3.3e-21 104.8 53 88.7
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 5.7e-21 104.0 58 82.8
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 7.5e-21 103.6 83 62.7
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 4.8e-20 100.9 50 92.0
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.1e-19 99.8 66 75.8
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 3.1e-19 98.2 65 72.3
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.5e-18 94.7 66 69.7
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.7e-18 93.6 75 60.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.7e-18 93.6 75 60.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 7.7e-18 93.6 75 60.0
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.2e-17 92.0 49 85.7
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.1e-16 89.7 63 66.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 3.2e-16 88.2 86 57.0
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 4.7e-15 84.3 48 83.3
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 6.1e-15 84.0 41 92.7
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 2.6e-13 78.6 42 88.1
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-13 78.6 83 57.8
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 8.3e-12 73.6 53 66.0
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.4e-11 72.0 39 79.5
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 4.1e-11 71.2 81 45.7
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.0e-10 68.9 59 61.0
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.7e-09 65.9 68 47.1
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 7.2e-08 60.5 32 84.4
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.2e-07 59.7 31 80.6
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.2e-07 59.7 31 80.6
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 3.6e-07 58.2 29 86.2
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.3e-06 55.5 30 80.0


User provided reference genes

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