Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.1e-40 169.5 81 100.0
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.5e-37 158.3 81 95.1
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 6.8e-35 150.2 81 88.9
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 4.1e-32 141.0 81 84.0
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 6.1e-28 127.1 80 76.2
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.8e-27 123.6 80 73.8
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.8e-27 123.6 80 73.8
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.8e-27 123.6 80 73.8
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.8e-27 123.6 80 73.8
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 8.9e-27 123.2 80 73.8
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 5.7e-26 120.6 80 75.0
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.7e-25 119.0 74 77.0
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.8e-24 115.5 80 71.2
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 9.2e-24 113.2 81 70.4
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.2e-23 112.8 81 67.9
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.6e-23 112.5 83 69.9
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.6e-23 112.5 81 70.4
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.6e-23 112.5 74 75.7
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.6e-23 110.9 81 66.7
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.9e-23 110.5 81 67.9
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 5.9e-23 110.5 81 67.9
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 5.9e-23 110.5 81 67.9
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 5.9e-23 110.5 81 67.9
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 5.9e-23 110.5 81 67.9
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 7.8e-23 110.2 80 65.0
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.8e-23 110.2 81 67.9
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.0e-22 109.8 82 64.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.0e-22 109.8 82 64.6
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.3e-22 109.4 80 65.0
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.3e-22 109.4 80 65.0
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.7e-22 109.0 81 67.9
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 1.7e-22 109.0 81 67.9
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.9e-22 107.8 81 66.7
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 3.9e-22 107.8 80 65.0
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 6.6e-22 107.1 82 67.1
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 6.6e-22 107.1 80 61.2
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 1.5e-21 105.9 80 63.8
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.9e-21 105.5 83 61.4
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 4.3e-21 104.4 81 66.7
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 7.3e-21 103.6 84 60.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 9.5e-21 103.2 81 64.2
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 9.5e-21 103.2 80 62.5
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.6e-20 102.4 80 62.5
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 2.1e-20 102.1 81 66.7
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 2.1e-20 102.1 80 62.5
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 2.8e-20 101.7 84 63.1
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.6e-20 101.3 82 63.4
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 3.6e-20 101.3 88 60.2
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.6e-20 101.3 83 65.1
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 3.6e-20 101.3 83 65.1
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 3.6e-20 101.3 81 66.7
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-19 99.8 79 63.3
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.8e-19 99.0 78 60.3
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 3.1e-19 98.2 83 63.9
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.1e-19 98.2 77 61.0
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 4.0e-19 97.8 80 63.8
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 4.0e-19 97.8 83 62.7
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 4.0e-19 97.8 80 61.2
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 5.2e-19 97.4 82 63.4
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 5.2e-19 97.4 80 61.2
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 8.9e-19 96.7 79 62.0
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.2e-18 96.3 81 63.0
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.5e-18 95.9 77 61.0
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 1.5e-18 95.9 80 60.0
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.5e-18 95.9 83 62.7
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 2.0e-18 95.5 84 64.3
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 2.6e-18 95.1 78 60.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.4e-18 94.7 71 66.2
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 3.4e-18 94.7 83 62.7
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 4.4e-18 94.4 86 57.0
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 5.8e-18 94.0 85 57.6
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 9.8e-18 93.2 82 63.4
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.3e-17 92.8 81 60.5
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.3e-17 92.8 77 59.7
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.2e-17 92.0 91 59.3
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.2e-17 92.0 94 54.3
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.2e-17 92.0 84 54.8
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.9e-17 91.7 85 57.6
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.9e-17 91.7 73 63.0
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 4.9e-17 90.9 80 56.2
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.1e-16 89.7 81 53.1
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.9e-16 89.0 81 58.0
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.9e-16 89.0 84 53.6
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.9e-16 89.0 81 60.5
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.9e-16 89.0 81 60.5
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 1.9e-16 89.0 80 53.8
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 2.4e-16 88.6 80 55.0
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.2e-16 88.2 81 58.0
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 4.1e-16 87.8 81 55.6
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 4.1e-16 87.8 81 59.3
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 4.1e-16 87.8 81 59.3
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 4.1e-16 87.8 82 54.9
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 4.1e-16 87.8 78 56.4
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 5.4e-16 87.4 81 51.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 7.0e-16 87.0 81 58.0
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 7.0e-16 87.0 81 56.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.2e-15 86.3 84 51.2
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.6e-15 85.9 78 55.1
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.6e-15 85.9 81 54.3
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.0e-15 85.5 81 58.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 2.7e-15 85.1 80 57.5
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 3.5e-15 84.7 85 52.9
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.5e-15 84.7 85 55.3
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 4.6e-15 84.3 81 56.8
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.6e-15 84.3 78 55.1
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 4.6e-15 84.3 85 54.1
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.0e-15 84.0 81 54.3
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 7.8e-15 83.6 81 54.3
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 7.8e-15 83.6 78 57.7
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.3e-14 82.8 80 52.5
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.7e-14 82.4 81 49.4
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.7e-14 82.4 81 55.6
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.3e-14 82.0 77 55.8
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.3e-14 82.0 77 55.8
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 2.3e-14 82.0 80 52.5
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 6.6e-14 80.5 82 51.2
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 8.6e-14 80.1 80 52.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 1.1e-13 79.7 80 52.5
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 1.5e-13 79.3 87 49.4
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.9e-13 79.0 73 61.6
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 4.3e-13 77.8 85 52.9
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 5.6e-13 77.4 82 56.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 7.3e-13 77.0 94 47.9
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 1.2e-12 76.3 76 51.3
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.1e-12 75.5 80 50.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.1e-12 75.5 81 50.6
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 2.1e-12 75.5 92 45.7
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.1e-12 75.5 98 46.9
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.8e-12 75.1 79 49.4
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.7e-12 74.3 88 50.0
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 8.1e-12 73.6 81 49.4
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 1.1e-11 73.2 80 50.0
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.1e-11 73.2 72 58.3
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.8e-11 72.4 82 46.3
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.8e-11 72.4 80 50.0
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 2.3e-11 72.0 76 51.3
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 3.1e-11 71.6 66 56.1
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.1e-11 71.6 80 48.8
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.0e-11 71.2 82 50.0
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 5.2e-11 70.9 80 48.8
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 5.2e-11 70.9 80 48.8
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 6.8e-11 70.5 100 46.0
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 8.9e-11 70.1 87 42.5
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.5e-10 69.3 78 44.9
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.6e-10 68.6 99 45.5
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 3.4e-10 68.2 76 46.1
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 3.4e-10 68.2 86 46.5
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 4.4e-10 67.8 85 47.1
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 5.8e-10 67.4 73 49.3
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 5.8e-10 67.4 74 45.9
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 5.8e-10 67.4 74 45.9
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 9.9e-10 66.6 91 42.9
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 9.9e-10 66.6 91 42.9
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 9.9e-10 66.6 91 42.9
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 9.9e-10 66.6 91 42.9
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 9.9e-10 66.6 91 42.9
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 9.9e-10 66.6 78 46.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-09 66.2 91 42.9
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-09 66.2 91 42.9
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.3e-09 66.2 92 42.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.7e-09 65.9 87 47.1
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.7e-09 65.9 78 46.2
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 4.9e-09 64.3 92 41.3
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 4.9e-09 64.3 92 41.3
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 4.9e-09 64.3 79 48.1
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 8.3e-09 63.5 46 67.4
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.4e-08 62.8 91 40.7
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.4e-08 62.8 74 44.6
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.4e-08 62.8 64 48.4
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 5.4e-08 60.8 81 45.7
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 5.4e-08 60.8 78 46.2
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 7.8e-07 57.0 85 40.0
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 7.8e-07 57.0 85 40.0
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 7.8e-07 57.0 85 40.0
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 2.3e-06 55.5 61 47.5
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 3.0e-06 55.1 67 47.8
BcaC08g43401 Brassica carinata HOM05D003453 ORTHO05D004154 5.1e-06 54.3 75 42.7
C06p07690 Brassica napus HOM05D003453 ORTHO05D004154 5.1e-06 54.3 75 42.7


User provided reference genes

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