Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.9e-164 582.4 281 100.0
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.5e-113 412.5 251 80.9
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 2.2e-109 399.4 251 78.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 4.4e-97 358.6 251 69.7
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 6.3e-96 354.8 249 69.5
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 1.4e-95 353.6 251 68.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.8e-95 353.2 251 67.3
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.4e-95 352.8 251 68.1
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 3.1e-95 352.4 251 68.1
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 5.3e-95 351.7 251 66.9
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 6.9e-95 351.3 251 67.7
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 6.9e-95 351.3 251 67.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 9.1e-95 350.9 251 67.7
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.0e-94 349.7 251 66.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.6e-94 349.4 251 67.7
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.4e-94 349.0 251 67.7
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 7.7e-94 347.8 251 66.9
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.0e-93 347.4 251 66.1
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.2e-93 346.3 256 65.2
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 2.9e-93 345.9 251 66.5
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 2.9e-93 345.9 251 66.5
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.9e-93 345.9 251 66.5
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 2.9e-93 345.9 251 66.5
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 5.0e-93 345.1 252 66.3
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 6.5e-93 344.7 269 65.4
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 8.5e-93 344.4 251 65.7
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.1e-92 344.0 251 66.9
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 3.2e-92 342.4 251 65.3
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.2e-92 342.4 251 65.3
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 4.2e-92 342.0 251 66.1
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.2e-92 341.3 249 66.3
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.1e-91 339.7 254 65.0
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 2.1e-91 339.7 251 65.7
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.1e-91 339.7 249 66.3
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.1e-91 339.7 251 64.1
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.7e-91 339.3 251 64.9
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.7e-91 339.3 251 64.1
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 3.6e-91 339.0 251 64.9
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.6e-91 339.0 251 65.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 3.6e-91 339.0 251 64.1
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 4.7e-91 338.6 251 64.5
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 7.9e-91 337.8 251 65.3
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 7.9e-91 337.8 251 66.5
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.0e-90 337.4 251 64.1
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 64.9
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 64.1
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 63.7
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 64.1
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 63.7
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 66.5
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.4e-90 337.0 251 64.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.8e-90 336.7 251 63.3
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.0e-90 335.9 251 62.9
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.2e-90 335.1 251 66.1
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 5.2e-90 335.1 251 65.7
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 6.7e-90 334.7 251 65.7
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 6.7e-90 334.7 251 62.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.1e-89 334.0 249 66.3
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.5e-89 333.6 251 63.7
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.0e-89 333.2 252 63.1
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.0e-89 333.2 251 64.5
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.3e-89 332.4 251 63.7
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 3.3e-89 332.4 251 64.5
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 4.4e-89 332.0 251 62.9
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 7.4e-89 331.3 249 65.5
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.7e-88 330.1 251 64.5
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.7e-88 330.1 251 64.5
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.7e-88 330.1 251 62.5
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.7e-88 328.9 251 62.9
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.7e-88 328.9 251 63.7
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 3.7e-88 328.9 254 63.4
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.8e-88 328.6 251 62.9
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 8.2e-88 327.8 249 66.3
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.4e-87 327.0 251 63.7
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.4e-87 327.0 251 62.5
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.8e-87 326.6 249 65.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.8e-87 326.6 254 62.2
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.8e-87 326.6 253 62.5
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.4e-87 326.2 251 62.9
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 4.1e-87 325.5 246 64.2
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 7.0e-87 324.7 251 64.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.2e-86 323.9 249 63.1
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.6e-86 323.6 253 60.9
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.0e-86 323.2 251 62.2
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.7e-85 320.1 251 61.0
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 1.7e-85 320.1 244 64.8
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.2e-85 319.7 248 62.9
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.9e-85 319.3 244 64.8
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 3.8e-85 318.9 248 62.5
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 3.8e-85 318.9 251 61.0
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 8.5e-85 317.8 251 61.0
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 9.4e-84 314.3 251 61.0
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.6e-83 313.5 251 60.6
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.6e-83 313.5 251 60.6
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 4.7e-83 312.0 252 61.9
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 8.0e-83 311.2 251 59.8
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 8.8e-82 307.8 250 59.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 8.8e-82 307.8 251 59.8
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 8.8e-82 307.8 251 59.8
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.7e-81 305.1 250 62.0
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 7.5e-81 304.7 250 59.6
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.3e-80 301.6 257 58.4
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.4e-79 299.7 251 59.0
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.3e-79 298.5 250 56.0
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 4.5e-78 295.4 251 61.4
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.5e-77 291.6 250 59.2
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.5e-76 290.4 249 55.8
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 6.1e-75 285.0 142 92.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-74 283.9 248 52.0
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 5.7e-73 278.5 253 53.0
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.3e-72 277.3 250 53.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.2e-70 270.8 249 53.8
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 6.5e-69 265.0 220 60.0
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.9e-68 263.5 230 55.7
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.6e-67 260.4 251 54.2
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.8e-66 256.9 250 53.2
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.3e-66 256.5 246 50.0
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.3e-66 256.5 218 56.9
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.2e-66 255.4 252 54.4
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.7e-64 250.4 249 55.0
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 7.0e-63 245.0 249 52.6
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.1e-60 237.7 274 48.9
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.1e-60 237.7 274 48.9
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 3.4e-57 226.1 134 74.6
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 4.9e-48 195.7 104 85.6
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 2.0e-46 190.3 106 80.2
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.7e-45 187.2 201 46.8
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 1.2e-38 164.5 254 36.2
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 3.9e-37 159.5 87 80.5
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 6.4e-32 142.1 70 85.7
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.0e-29 133.3 139 51.8
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.0e-26 122.9 250 34.4
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 4.6e-22 109.4 76 67.1
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.8e-19 100.1 131 44.3
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.5e-17 94.4 62 75.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.3e-11 74.7 258 24.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 6.2e-11 72.4 42 66.7
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.9e-09 65.1 49 59.2
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.7e-08 64.3 243 23.9
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.6e-06 57.8 221 24.0


User provided reference genes

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