Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029505.2 Cucumis melo HOM05D057221 ORTHO05D003242 1.1e-139 500.0 255 100.0
MELO3C032113.2 Cucumis melo HOM05D057221 ORTHO05D168937 6.2e-34 148.7 105 75.2
MELO3C017794.2 Cucumis melo HOM05D003063 ORTHO05D003242 2.3e-20 103.6 106 58.5
CsaV3_4G002510 Cucumis sativus L. HOM05D003063 ORTHO05D003242 2.3e-20 103.6 107 57.9
MELO3C031865.2 Cucumis melo HOM05D003063 ORTHO05D003242 8.7e-20 101.7 57 87.7
CsaV3_2G005030 Cucumis sativus L. HOM05D000005 ORTHO05D000012 1.5e-19 100.9 68 85.3
ClCG07G011700 Citrullus lanatus HOM05D003063 ORTHO05D003242 4.3e-19 99.4 107 55.1
Sed0026282 Sechium edule HOM05D003063 ORTHO05D003242 1.4e-17 94.4 121 50.4
MELO3C004294.2 Cucumis melo HOM05D000005 ORTHO05D000012 5.3e-17 92.4 70 75.7
CsaV3_2G005060 Cucumis sativus L. HOM05D000005 ORTHO05D000012 3.4e-16 89.7 136 43.4
MELO3C004288.2 Cucumis melo HOM05D000005 ORTHO05D000012 7.6e-16 88.6 136 42.6
CsaV3_2G009780 Cucumis sativus L. HOM05D000005 ORTHO05D000012 3.8e-15 86.3 78 60.3
CsaV3_2G008390 Cucumis sativus L. HOM05D000005 ORTHO05D000012 4.9e-15 85.9 123 44.7
ClCG02G016120 Citrullus lanatus HOM05D000005 ORTHO05D000012 3.2e-14 83.2 67 70.1
MELO3C000155.2 Cucumis melo HOM05D003063 ORTHO05D003242 4.2e-14 82.8 84 59.5
MELO3C004292.2 Cucumis melo HOM05D000005 ORTHO05D000012 2.7e-13 80.1 136 41.9
MELO3C004311.2 Cucumis melo HOM05D000005 ORTHO05D000012 2.7e-13 80.1 123 40.7
MELO3C027376.2 Cucumis melo HOM05D000005 ORTHO05D000012 3.5e-13 79.7 67 62.7
CsaV3_2G005050 Cucumis sativus L. HOM05D000005 ORTHO05D000012 3.9e-12 76.3 78 57.7
Manes.04G047800 Manihot esculenta HOM05D003063 ORTHO05D003242 2.5e-11 73.6 93 46.2
QL10p051682 Quercus lobata HOM05D003063 ORTHO05D003242 1.3e-10 71.2 109 43.1
Lj3g0000361 Lotus japonicus HOM05D003063 ORTHO05D003242 2.8e-10 70.1 109 41.3
Gohir.A10G140900 Gossypium hirsutum HOM05D003063 ORTHO05D003242 4.8e-10 69.3 99 43.4
Gohir.D10G126000 Gossypium hirsutum HOM05D003063 ORTHO05D003242 4.8e-10 69.3 99 43.4
Gorai.011G139000 Gossypium raimondii HOM05D003063 ORTHO05D003242 4.8e-10 69.3 99 43.4
Prupe.1G199700 Prunus persica HOM05D003063 ORTHO05D003242 6.3e-10 68.9 50 66.0
Thecc.04G172800 Theobroma cacao HOM05D003063 ORTHO05D003242 1.8e-09 67.4 98 43.9
TWI63G1624 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 1.8e-09 67.4 97 43.3
COL.COLO4_06571 Corchorus olitorius HOM05D003063 ORTHO05D003242 3.1e-09 66.6 162 35.8
Atru.chr4.1282 Acer truncatum HOM05D003063 ORTHO05D003242 4.1e-09 66.2 105 43.8
Cpa.g.sc9.325 Carica papaya HOM05D003063 ORTHO05D003242 5.3e-09 65.9 98 41.8
Duzib151G0337 Durio zibethinus HOM05D003063 ORTHO05D003242 5.3e-09 65.9 98 41.8
Glyma.13G345900 Glycine max HOM05D003063 ORTHO05D003242 5.3e-09 65.9 98 41.8
PGR142G1686 Punica granatum HOM05D003063 ORTHO05D003242 5.3e-09 65.9 44 70.5
vmacro00673 Vaccinium macrocarpon HOM05D003063 ORTHO05D003242 5.3e-09 65.9 102 39.2
Manes.11G126100 Manihot esculenta HOM05D003063 ORTHO05D003242 6.9e-09 65.5 110 41.8
Hma1.2p1_0487F.1_g163580 Hydrangea macrophylla HOM05D003063 ORTHO05D003242 1.2e-08 64.7 100 42.0
Actinidia34575 Actinidia chinensis HOM05D003063 ORTHO05D003242 1.5e-08 64.3 94 41.5
arahy.Tifrunner.gnm1.ann1.J2NQJ1 Arachis hypogaea HOM05D003063 ORTHO05D003242 1.5e-08 64.3 137 37.2
GSVIVG01004107001 Vitis vinifera HOM05D003063 ORTHO05D003242 1.5e-08 64.3 45 68.9
CiPaw.01G095400 Carya illinoinensis HOM05D003063 ORTHO05D003242 2.0e-08 63.9 44 70.5
Ca_01244_v3 Cicer arietinum L. HOM05D003063 ORTHO05D003242 2.0e-08 63.9 106 40.6
arahy.Tifrunner.gnm1.ann1.NI516C Arachis hypogaea HOM05D003063 ORTHO05D003242 2.6e-08 63.5 137 37.2
SalBow6G7191 Salvia bowleyana HOM05D003063 ORTHO05D003242 2.6e-08 63.5 93 44.1
TPR.G6513 Trifolium pratense HOM05D003063 ORTHO05D003242 2.6e-08 63.5 108 40.7
TWI38G2174 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 2.6e-08 63.5 94 42.6
MELO3C004291.2 Cucumis melo HOM05D000005 ORTHO05D000012 3.4e-08 63.2 78 46.2
Medtr2g099140 Medicago truncatula HOM05D003063 ORTHO05D003242 3.4e-08 63.2 104 40.4
MSTRG.24571 Avicennia marina HOM05D003063 ORTHO05D003242 4.5e-08 62.8 45 66.7
CANSAT78G0998 Cannabis sativa HOM05D003063 ORTHO05D003242 4.5e-08 62.8 95 42.1
Lj6A108T23 Lonicera japonica HOM05D003063 ORTHO05D003242 4.5e-08 62.8 107 40.2
Hund12400 Selenicereus undatus HOM05D003063 ORTHO05D003242 4.5e-08 62.8 90 36.7
CSS0005943 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 5.8e-08 62.4 93 43.0
CSS0015309 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 5.8e-08 62.4 93 43.0
Lalb_Chr24g0396721 Lupinus albus HOM05D003063 ORTHO05D003242 5.8e-08 62.4 98 42.9
Phvul.005G154700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 5.8e-08 62.4 44 68.2
Sabra17G0001800 Salix brachista HOM05D003063 ORTHO05D003242 5.8e-08 62.4 95 38.9
Ah.13g073590 Amaranthus hybridus HOM05D003063 ORTHO05D003242 7.6e-08 62.0 117 35.0
AUR62002358 Chenopodium quinoa HOM05D003063 ORTHO05D003242 7.6e-08 62.0 98 37.8
Peaxi162Scf00075g01551 Petunia axillaris HOM05D003063 ORTHO05D003242 7.6e-08 62.0 104 37.5
THA.LOC104804510 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 7.6e-08 62.0 64 45.3
VMungo0647G0762 Vigna mungo HOM05D000936 ORTHO05D003242 7.6e-08 62.0 49 59.2
Dinv05088 Davidia involucrata HOM05D003063 ORTHO05D003242 1.0e-07 61.6 44 68.2
HanXRQChr13g0419471 Helianthus annuus HOM05D003063 ORTHO05D003242 1.0e-07 61.6 102 39.2
Nitab4.5_0001521g0050 Nicotiana tabacum HOM05D003063 ORTHO05D003242 1.0e-07 61.6 45 62.2
Peaxi162Scf00180g00520 Petunia axillaris HOM05D003063 ORTHO05D003242 1.0e-07 61.6 112 34.8
Sopen08g004890 Solanum pennellii HOM05D003063 ORTHO05D003242 1.0e-07 61.6 106 36.8
SGA_v2.0_scaffold120G33008 Striga asiatica HOM05D003063 ORTHO05D003242 1.0e-07 61.6 93 41.9
VMungo1080G0015 Vigna mungo HOM05D003063 ORTHO05D003242 1.0e-07 61.6 44 65.9
CsaV3_2G005270 Cucumis sativus L. HOM05D000005 ORTHO05D014188 1.3e-07 61.2 59 49.2
Lj3g0022705 Lotus japonicus HOM05D003063 ORTHO05D003242 1.3e-07 61.2 50 58.0
Solyc06g073140.2 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.3e-07 61.2 108 38.0
Solyc08g014010.4 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.3e-07 61.2 106 36.8
Sopen06g029490 Solanum pennellii HOM05D003063 ORTHO05D003242 1.3e-07 61.2 108 38.0
TAR633G0315 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.3e-07 61.2 98 39.8
HanXRQChr13g0419461 Helianthus annuus HOM05D003063 ORTHO05D003242 1.7e-07 60.8 102 39.2
Nn1g09564 Nelumbo nucifera HOM05D003063 ORTHO05D003242 1.7e-07 60.8 98 38.8
Eucgr.H00339 Eucalyptus grandis HOM05D003063 ORTHO05D003242 2.2e-07 60.5 44 61.4
TAR362G0372 Trochodendron aralioides HOM05D003063 ORTHO05D003242 2.2e-07 60.5 64 46.9
AUR62023827 Chenopodium quinoa HOM05D003063 ORTHO05D003242 2.9e-07 60.1 98 37.8
Oeu022687.1 Olea europaea HOM05D003063 ORTHO05D003242 2.9e-07 60.1 173 33.5
PGSC0003DMG400014614 Solanum tuberosum HOM05D003063 ORTHO05D003242 2.9e-07 60.1 106 35.8
Lalb_Chr03g0025991 Lupinus albus HOM05D003063 ORTHO05D003242 3.8e-07 59.7 49 59.2
Psat5g290560 Pisum sativum HOM05D003063 ORTHO05D003242 3.8e-07 59.7 97 41.2
Potri.017G023400 Populus trichocarpa HOM05D003063 ORTHO05D003242 3.8e-07 59.7 45 64.4
MSTRG.22013 Avicennia marina HOM05D003063 ORTHO05D003242 5.0e-07 59.3 95 40.0
Ciclev10019609m.g Citrus clementina HOM05D003063 ORTHO05D003242 5.0e-07 59.3 99 37.4
Cc03_g12310 Coffea canephora HOM05D003063 ORTHO05D003242 5.0e-07 59.3 96 39.6
MELO3C004262.2 Cucumis melo HOM05D000005 ORTHO05D014188 5.0e-07 59.3 67 43.3
HanXRQChr03g0090201 Helianthus annuus HOM05D003063 ORTHO05D003242 5.0e-07 59.3 79 44.3
Potri.007G132601 Populus trichocarpa HOM05D003063 ORTHO05D003242 5.0e-07 59.3 95 38.9
Rhsim09G0017900 Rhododendron simsii HOM05D003063 ORTHO05D003242 5.0e-07 59.3 94 40.4
Glyma.15G028400 Glycine max HOM05D003063 ORTHO05D003242 6.5e-07 58.9 44 65.9
PGSC0003DMG400026919 Solanum tuberosum HOM05D003063 ORTHO05D003242 6.5e-07 58.9 110 37.3
MELO3C004309.2 Cucumis melo HOM05D000005 ORTHO05D000012 8.4e-07 58.5 59 49.2
Migut.N03092 Erythranthe guttata HOM05D003063 ORTHO05D003242 8.4e-07 58.5 94 40.4
Aqoxy4G00265 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 1.1e-06 58.2 92 41.3
ClCG02G016090 Citrullus lanatus HOM05D000005 ORTHO05D000012 1.1e-06 58.2 67 52.2
Oeu035189.1 Olea europaea HOM05D003063 ORTHO05D003242 1.1e-06 58.2 94 38.3
MD04G1046200 Malus domestica HOM05D003063 ORTHO05D003242 1.4e-06 57.8 50 56.0
Sabra07G0107600 Salix brachista HOM05D003063 ORTHO05D003242 1.4e-06 57.8 45 62.2
TAR633G1709 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.4e-06 57.8 109 36.7
MELO3C004261.2 Cucumis melo HOM05D000005 ORTHO05D029179 1.9e-06 57.4 67 43.3
Nn7g37566 Nelumbo nucifera HOM05D003063 ORTHO05D003242 1.9e-06 57.4 98 36.7
Nitab4.5_0000242g0110 Nicotiana tabacum HOM05D003063 ORTHO05D003242 1.9e-06 57.4 41 63.4
TAR633G1477 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.9e-06 57.4 45 60.0
EL10Ac3g06022 Beta vulgaris HOM05D003063 ORTHO05D003242 2.5e-06 57.0 72 37.5
MELO3C004301.2 Cucumis melo HOM05D000005 ORTHO05D014188 2.5e-06 57.0 67 43.3
Lsat_1_v5_gn_3_111480 Lactuca sativa HOM05D003063 ORTHO05D003242 2.5e-06 57.0 102 37.3
Nitab4.5_0001586g0230 Nicotiana tabacum HOM05D003063 ORTHO05D003242 2.5e-06 57.0 106 35.8
CsaV3_2G004890 Cucumis sativus L. HOM05D000005 ORTHO05D000012 4.2e-06 56.2 59 45.8
CAN.G65.160 Capsicum annuum HOM05D003063 ORTHO05D003242 5.5e-06 55.8 51 51.0
ECA240G0473 Erigeron canadensis HOM05D003063 ORTHO05D003242 5.5e-06 55.8 51 47.1
CsaV3_2G005280 Cucumis sativus L. HOM05D000005 ORTHO05D000012 7.2e-06 55.5 67 40.3
Phvul.011G052700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 7.2e-06 55.5 67 41.8
Ca_20804_v3 Cicer arietinum L. HOM05D001295 ORTHO05D003242 9.3e-06 55.1 43 58.1
Nitab4.5_0002553g0050 Nicotiana tabacum HOM05D003063 ORTHO05D003242 9.3e-06 55.1 106 34.9


User provided reference genes

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