Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029466.2 Cucumis melo HOM05D000457 ORTHO05D000560 2.0e-17 91.3 44 100.0
MELO3C000089.2 Cucumis melo HOM05D000457 ORTHO05D000560 2.7e-14 80.9 43 93.0
MELO3C016426.2 Cucumis melo HOM05D000457 ORTHO05D000560 8.3e-11 69.3 37 91.9
CsaV3_3G006820 Cucumis sativus L. HOM05D000457 ORTHO05D000560 1.1e-10 68.9 37 89.2
MELO3C020385.2 Cucumis melo HOM05D000457 ORTHO05D000560 9.1e-10 65.9 35 91.4
Sed0027163 Sechium edule HOM05D000457 ORTHO05D000560 1.6e-09 65.1 37 83.8
ClCG10G007690 Citrullus lanatus HOM05D000457 ORTHO05D000560 2.0e-09 64.7 37 81.1
DCAR_001876 Daucus carota HOM05D000457 ORTHO05D000560 7.7e-09 62.8 37 78.4
Gohir.D10G216500 Gossypium hirsutum HOM05D000457 ORTHO05D000560 1.0e-08 62.4 37 81.1
Gorai.011G242100 Gossypium raimondii HOM05D000457 ORTHO05D000560 1.0e-08 62.4 37 81.1
Gohir.A10G208200 Gossypium hirsutum HOM05D000457 ORTHO05D000560 1.3e-08 62.0 37 81.1
Thecc.10G064400 Theobroma cacao HOM05D000457 ORTHO05D000560 2.2e-08 61.2 37 78.4
AUR62032510 Chenopodium quinoa HOM05D000457 ORTHO05D000560 2.9e-08 60.8 35 82.9
COL.COLO4_06788 Corchorus olitorius HOM05D000457 ORTHO05D000560 2.9e-08 60.8 37 78.4
Duzib114G0620 Durio zibethinus HOM05D000457 ORTHO05D000560 2.9e-08 60.8 37 78.4
Carub.0008s0961 Capsella rubella HOM05D000457 ORTHO05D000560 3.8e-08 60.5 35 82.9
CiPaw.12G009700 Carya illinoinensis HOM05D000457 ORTHO05D000560 5.0e-08 60.1 37 78.4
Sc03g0005550 Simmondsia chinensis HOM05D000457 ORTHO05D000560 6.5e-08 59.7 35 80.0
Cfa004411 Carpinus fangiana HOM05D000457 ORTHO05D000560 8.5e-08 59.3 35 80.0
Haze_09947 Corylus avellana HOM05D000457 ORTHO05D000560 8.5e-08 59.3 35 80.0
QL02p104109 Quercus lobata HOM05D000457 ORTHO05D000560 8.5e-08 59.3 35 80.0
Sp6g11000 Schrenkiella parvula HOM05D000457 ORTHO05D000560 8.5e-08 59.3 35 77.1
Hund23749 Selenicereus undatus HOM05D000457 ORTHO05D000560 8.5e-08 59.3 35 77.1
TWI59G1411 Tripterygium wilfordii HOM05D000457 ORTHO05D000560 8.5e-08 59.3 37 75.7
AL8G23660 Arabidopsis lyrata HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
AL8G23670 Arabidopsis lyrata HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
AT5G49730 Arabidopsis thaliana HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
AT5G49740 Arabidopsis thaliana HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
CARHR259040 Cardamine hirsuta HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
DCAR_022318 Daucus carota HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
Thhalv10012839m.g Eutrema salsugineum HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
Manes.06G016800 Manihot esculenta HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
Potri.001G079000 Populus trichocarpa HOM05D000457 ORTHO05D000560 1.1e-07 58.9 35 80.0
THA.LOC104800318 Tarenaya hassleriana HOM05D000457 ORTHO05D000560 1.5e-07 58.5 35 77.1
TWI59G0951 Tripterygium wilfordii HOM05D000457 ORTHO05D000560 1.5e-07 58.5 37 73.0
MELO3C031145.2 Cucumis melo HOM05D000457 ORTHO05D000560 1.9e-07 58.2 33 84.8
RcHm_v2.0_Chr7g0218161 Rosa chinensis HOM05D000457 ORTHO05D000560 1.9e-07 58.2 37 73.0
EL10Ac6g13935 Beta vulgaris HOM05D000457 ORTHO05D000560 2.5e-07 57.8 35 80.0
MD08G1250800 Malus domestica HOM05D000457 ORTHO05D000560 2.5e-07 57.8 36 75.0
BcaB08g35344 Brassica carinata HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
BcaC04g20829 Brassica carinata HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
A10p08720 Brassica napus HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
C09p38720 Brassica napus HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
BolC9t56727H Brassica oleracea HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
BraSC37t46130Z Brassica rapa HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
QL02p104042 Quercus lobata HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
Sabra01G0056400 Salix brachista HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
Sabra01G0056600 Salix brachista HOM05D000457 ORTHO05D000560 3.2e-07 57.4 35 77.1
Ca_11365_v3 Cicer arietinum L. HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 73.0
FvH4_5g27150 Fragaria vesca HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 70.3
FAN08G0526 Fragaria x ananassa HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 70.3
FAN13G2432 Fragaria x ananassa HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 70.3
Glyma.09G018600 Glycine max HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 73.0
Glyma.15G124700 Glycine max HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 73.0
HanXRQChr14g0440361 Helianthus annuus HOM05D000457 ORTHO05D000560 4.2e-07 57.0 36 75.0
PSO017G6043 Papaver somniferum HOM05D000457 ORTHO05D000560 4.2e-07 57.0 37 70.3
SalBow1G4065 Salvia bowleyana HOM05D000457 ORTHO05D000560 4.2e-07 57.0 35 74.3
GSVIVG01023105001 Vitis vinifera HOM05D000457 ORTHO05D000560 4.2e-07 57.0 35 77.1
Ciclev10000235m.g Citrus clementina HOM05D000457 ORTHO05D000560 5.5e-07 56.6 35 77.1
ECA236G4330 Erigeron canadensis HOM05D000457 ORTHO05D000560 5.5e-07 56.6 36 72.2
Lj6g0019314 Lotus japonicus HOM05D000457 ORTHO05D000560 5.5e-07 56.6 37 70.3
Prupe.1G587800 Prunus persica HOM05D000457 ORTHO05D000560 5.5e-07 56.6 37 70.3
MD15G1140500 Malus domestica HOM05D000457 ORTHO05D000560 7.2e-07 56.2 37 73.0
Nitab4.5_0004090g0120 Nicotiana tabacum HOM05D000457 ORTHO05D000560 7.2e-07 56.2 35 74.3
VMungo0540G0366 Vigna mungo HOM05D000457 ORTHO05D000560 7.2e-07 56.2 37 70.3
CANSAT01G0014 Cannabis sativa HOM05D000457 ORTHO05D000560 9.4e-07 55.8 35 74.3
Cc02_g36770 Coffea canephora HOM05D000457 ORTHO05D000560 9.4e-07 55.8 35 74.3
Lsat_1_v5_gn_9_81901 Lactuca sativa HOM05D000457 ORTHO05D000560 9.4e-07 55.8 36 72.2
Nitab4.5_0004176g0050 Nicotiana tabacum HOM05D000457 ORTHO05D000560 9.4e-07 55.8 35 71.4
Peaxi162Scf00194g00818 Petunia axillaris HOM05D000457 ORTHO05D000560 9.4e-07 55.8 35 71.4
RcHm_v2.0_Chr7g0218171 Rosa chinensis HOM05D000457 ORTHO05D000560 9.4e-07 55.8 37 67.6
Atru.chr6.28 Acer truncatum HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 74.3
CAN.G1379.26 Capsicum annuum HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
CiPaw.05G000100 Carya illinoinensis HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
CiPaw.05G000200 Carya illinoinensis HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
Dinv30977 Davidia involucrata HOM05D000457 ORTHO05D000560 1.2e-06 55.5 37 70.3
Lj5A309T28 Lonicera japonica HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 74.3
Nitab4.5_0004176g0030 Nicotiana tabacum HOM05D000457 ORTHO05D000560 1.2e-06 55.5 37 67.6
Solyc01g102610.3 Solanum lycopersicum HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
Sopen01g045020 Solanum pennellii HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
PGSC0003DMG401018223 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.2e-06 55.5 35 71.4
Medtr2g028530 Medicago truncatula HOM05D000457 ORTHO05D000560 1.6e-06 55.1 37 67.6
PSO170G2371 Papaver somniferum HOM05D000457 ORTHO05D000560 1.6e-06 55.1 37 67.6
Psat1g170720 Pisum sativum HOM05D000457 ORTHO05D000560 1.6e-06 55.1 37 67.6
PGR142G1709 Punica granatum HOM05D000457 ORTHO05D000560 1.6e-06 55.1 37 70.3
Aa31sc75G60 Aethionema arabicum HOM05D000457 ORTHO05D000560 2.1e-06 54.7 35 74.3
Eucgr.I01139 Eucalyptus grandis HOM05D000457 ORTHO05D000560 2.1e-06 54.7 35 74.3
HanXRQChr00c0020g0571101 Helianthus annuus HOM05D000457 ORTHO05D000560 2.1e-06 54.7 36 69.4
QL04p018493 Quercus lobata HOM05D000457 ORTHO05D000560 2.1e-06 54.7 35 71.4
TPR.G17525 Trifolium pratense HOM05D000457 ORTHO05D000560 2.1e-06 54.7 37 67.6
Actinidia01649 Actinidia chinensis HOM05D000457 ORTHO05D000560 2.7e-06 54.3 35 74.3
MSTRG.20345 Avicennia marina HOM05D000457 ORTHO05D000560 2.7e-06 54.3 35 71.4
CDE02G3687 Ceratophyllum demersum HOM05D000457 ORTHO05D000560 2.7e-06 54.3 36 63.9
Peaxi162Scf00194g00728 Petunia axillaris HOM05D000457 ORTHO05D000560 2.7e-06 54.3 35 71.4
TPR.G17487 Trifolium pratense HOM05D000457 ORTHO05D000560 2.7e-06 54.3 37 64.9
arahy.Tifrunner.gnm1.ann1.ALC201 Arachis hypogaea HOM05D000457 ORTHO05D000560 3.6e-06 53.9 35 71.4
arahy.Tifrunner.gnm1.ann1.HUI7W7 Arachis hypogaea HOM05D000457 ORTHO05D000560 3.6e-06 53.9 35 71.4
Cfa005551 Carpinus fangiana HOM05D000457 ORTHO05D000560 3.6e-06 53.9 35 71.4
Eucgr.B03992 Eucalyptus grandis HOM05D000457 ORTHO05D000560 3.6e-06 53.9 37 67.6
MBI03_g28959_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D000560 3.6e-06 53.9 37 64.9
Peaxi162Scf00194g00817 Petunia axillaris HOM05D000457 ORTHO05D000560 3.6e-06 53.9 35 68.6
HPP92_011444 Vanilla planifolia HOM05D000457 ORTHO05D000560 3.6e-06 53.9 35 74.3
PGR102G1669 Punica granatum HOM05D000457 ORTHO05D000560 4.7e-06 53.5 36 69.4
QL10p023888 Quercus lobata HOM05D000457 ORTHO05D000560 4.7e-06 53.5 35 71.4
Eucgr.I01142 Eucalyptus grandis HOM05D000457 ORTHO05D000560 6.1e-06 53.1 35 71.4
Lalb_Chr20g0119821 Lupinus albus HOM05D000457 ORTHO05D000560 6.1e-06 53.1 36 63.9
Phvul.006G133600 Phaseolus vulgaris HOM05D000457 ORTHO05D000560 6.1e-06 53.1 37 67.6
Cfa004410 Carpinus fangiana HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 71.4
Haze_09946 Corylus avellana HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 71.4
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 71.4
Migut.B00686 Erythranthe guttata HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 65.7
Lsat_1_v5_gn_7_54801 Lactuca sativa HOM05D000457 ORTHO05D000560 8.0e-06 52.8 36 66.7
PGR142G2562 Punica granatum HOM05D000457 ORTHO05D000560 8.0e-06 52.8 37 67.6
PGR142G2765 Punica granatum HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 74.3
QL02p104068 Quercus lobata HOM05D000457 ORTHO05D000560 8.0e-06 52.8 35 68.6
Zm00001eb081810 Zea mays HOM05D000457 ORTHO05D000560 8.0e-06 52.8 37 70.3


User provided reference genes

Program Settings