Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.2e-16 86.3 42 100.0
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 8.4e-13 75.9 41 82.9
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 8.4e-13 75.9 41 87.8
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.1e-12 75.5 41 87.8
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.2e-11 72.0 41 85.4
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 3.5e-11 70.5 41 80.5
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 8.7e-10 65.9 41 78.0
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.9e-09 64.7 35 80.0
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.9e-09 64.7 35 80.0
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 2.5e-09 64.3 35 80.0
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 9.6e-09 62.4 35 77.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 9.6e-09 62.4 35 77.1
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 9.6e-09 62.4 35 77.1
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.3e-08 62.0 35 74.3
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.6e-08 61.6 35 74.3
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 2.1e-08 61.2 32 81.2
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 2.1e-08 61.2 32 81.2
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 2.1e-08 61.2 35 74.3
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.1e-08 61.2 34 73.5
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 2.1e-08 61.2 34 73.5
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 2.1e-08 61.2 35 74.3
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.8e-08 60.8 35 74.3
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.8e-08 60.8 35 74.3
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 2.8e-08 60.8 32 78.1
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 3.7e-08 60.5 35 71.4
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 4.8e-08 60.1 39 69.2
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 6.2e-08 59.7 35 71.4
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 6.2e-08 59.7 35 74.3
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 8.2e-08 59.3 40 67.5
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.1e-07 58.9 32 71.9
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.1e-07 58.9 35 68.6
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.1e-07 58.9 35 71.4
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.1e-07 58.9 34 73.5
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 1.4e-07 58.5 36 66.7
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.4e-07 58.5 34 73.5
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 1.8e-07 58.2 34 70.6
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 2.4e-07 57.8 35 65.7
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 2.4e-07 57.8 32 75.0
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 2.4e-07 57.8 42 69.0
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 2.4e-07 57.8 32 75.0
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 2.4e-07 57.8 30 80.0
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 2.4e-07 57.8 32 75.0
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 2.4e-07 57.8 32 75.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 3.1e-07 57.4 35 68.6
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.1e-07 57.4 35 71.4
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 4.0e-07 57.0 35 62.9
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 4.0e-07 57.0 36 72.2
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 4.0e-07 57.0 39 61.5
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 4.0e-07 57.0 35 68.6
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 5.3e-07 56.6 36 63.9
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 5.3e-07 56.6 35 68.6
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 9.0e-07 55.8 32 71.9
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 9.0e-07 55.8 40 60.0
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 9.0e-07 55.8 39 61.5
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 9.0e-07 55.8 35 65.7
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.2e-06 55.5 32 71.9
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.2e-06 55.5 35 62.9
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.2e-06 55.5 32 68.8
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.2e-06 55.5 36 63.9
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.5e-06 55.1 34 67.6
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.0e-06 54.7 32 68.8
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.0e-06 54.7 32 68.8
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 2.0e-06 54.7 34 64.7
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 2.0e-06 54.7 35 68.6
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 2.6e-06 54.3 34 73.5
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 2.6e-06 54.3 33 66.7
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.6e-06 54.3 39 59.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.4e-06 53.9 37 62.2
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.4e-06 53.9 37 62.2
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.4e-06 53.9 37 62.2
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.4e-06 53.9 35 65.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 3.4e-06 53.9 36 55.6
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 4.5e-06 53.5 36 66.7
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 4.5e-06 53.5 35 62.9
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 4.5e-06 53.5 41 53.7
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 4.5e-06 53.5 32 65.6
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.8e-06 53.1 26 84.6
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 5.8e-06 53.1 38 60.5
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 5.8e-06 53.1 32 71.9
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 7.6e-06 52.8 40 50.0
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 7.6e-06 52.8 38 52.6
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.0e-05 52.4 34 64.7
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.0e-05 52.4 32 65.6


User provided reference genes

Program Settings