Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.5e-71 270.8 130 100.0
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.4e-60 235.0 126 91.3
MELO3C035437.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-54 216.5 121 87.6
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 8.3e-51 203.8 125 76.8
MELO3C032996.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.3e-47 191.4 118 82.2
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.5e-39 166.4 120 73.3
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.7e-35 151.8 78 85.9
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 2.5e-31 139.0 123 54.5
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 9.5e-31 137.1 136 50.7
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 2.1e-30 136.0 138 54.3
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-29 132.9 136 51.5
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-29 132.5 137 51.1
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.1e-29 132.1 136 50.7
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.2e-29 131.3 136 50.7
MELO3C031186.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.7e-27 126.3 74 86.5
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 8.3e-27 124.0 121 48.8
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-24 115.9 115 48.7
MELO3C035305.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.9e-24 115.2 78 65.4
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.3e-23 111.7 74 63.5
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-22 110.2 78 62.8
MELO3C035542.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.6e-22 109.8 126 49.2
MELO3C030512.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.7e-22 108.2 128 43.0
MELO3C030644.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.1e-22 107.5 104 50.0
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.4e-21 106.7 64 67.2
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 4.0e-21 105.1 99 50.5
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 6.8e-21 104.4 98 50.0
RcHm_v2.0_Chr5g0064801 Rosa chinensis HOM05D007314 ORTHO05D003768 8.9e-21 104.0 99 49.5
RcHm_v2.0_Chr3g0492801 Rosa chinensis HOM05D007314 ORTHO05D003768 3.4e-20 102.1 84 53.6
MELO3C031375.2 Cucumis melo HOM05D008781 ORTHO05D003768 7.6e-20 100.9 104 53.8
RcHm_v2.0_Chr4g0444771 Rosa chinensis HOM05D007314 ORTHO05D003768 1.4e-18 96.7 75 54.7
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.4e-18 95.9 102 49.0
CsaV3_4G009050 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.4e-18 95.9 73 54.8
RcHm_v2.0_Chr5g0059371 Rosa chinensis HOM05D007314 ORTHO05D003768 4.2e-18 95.1 75 54.7
MELO3C035072.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.1e-17 92.8 64 60.9
RcHm_v2.0_Chr7g0200591 Rosa chinensis HOM05D007314 ORTHO05D003768 2.7e-17 92.4 80 50.0
MELO3C032661.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.9e-16 88.6 43 83.7
MELO3C029734.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.7e-16 87.4 103 49.5
CsaV3_7G021120 Cucumis sativus L. HOM05D007314 ORTHO05D003768 2.5e-15 85.9 57 61.4
MELO3C034792.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.3e-15 85.5 62 61.3
CANSAT25G1818 Cannabis sativa HOM05D007314 ORTHO05D003768 4.3e-15 85.1 127 38.6
FvH4_4g01311 Fragaria vesca HOM05D007314 ORTHO05D003768 4.3e-15 85.1 70 54.3
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.6e-14 83.2 103 46.6
FvH4_4g12371 Fragaria vesca HOM05D007314 ORTHO05D003768 3.6e-14 82.0 74 47.3
ClCG02G008860 Citrullus lanatus HOM05D007314 ORTHO05D003768 8.1e-14 80.9 87 49.4
CANSAT25G2929 Cannabis sativa HOM05D007314 ORTHO05D003768 1.4e-13 80.1 126 35.7
MELO3C029566.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.0e-13 78.6 95 45.3
FvH4_6g21082 Fragaria vesca HOM05D007314 ORTHO05D003768 4.0e-13 78.6 55 60.0
MELO3C032011.2 Cucumis melo HOM05D011747 ORTHO05D014199 6.9e-13 77.8 47 87.2
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.5e-12 76.6 126 39.7
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.5e-12 76.6 127 39.4
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 2.6e-12 75.9 127 36.2
MELO3C028630.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.4e-11 70.9 53 56.6
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.9e-10 69.7 69 49.3
CSS0045721 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.6e-09 66.6 69 47.8
C09p36000 Brassica napus HOM05D007314 ORTHO05D003768 2.1e-09 66.2 72 38.9
MELO3C033635.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.7e-09 65.9 49 57.1
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 4.6e-09 65.1 69 46.4
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 1.0e-08 63.9 114 36.8
Aqoxy5G02986 Aquilegia oxysepala HOM05D007314 ORTHO05D000285 1.7e-08 63.2 87 36.8
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.0e-08 62.4 114 36.0
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 6.6e-08 61.2 81 40.7
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 1.1e-07 60.5 82 40.2
MELO3C000505.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.5e-07 60.1 38 60.5
MELO3C033118.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-07 60.1 37 64.9
BolC2t08290H Brassica oleracea HOM05D007314 ORTHO05D003768 3.3e-07 58.9 58 44.8
MELO3C031214.2 Cucumis melo HOM05D007314 ORTHO05D168014 3.3e-07 58.9 29 96.6
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 3.3e-07 58.9 96 35.4
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 4.3e-07 58.5 88 39.8
MELO3C032453.2 Cucumis melo HOM05D007314 ORTHO05D034924 4.3e-07 58.5 45 53.3
FvH4_5g23172 Fragaria vesca HOM05D008321 ORTHO05D003768 4.3e-07 58.5 109 34.9
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 4.3e-07 58.5 69 40.6
FvH4_1g29373 Fragaria vesca HOM05D008321 ORTHO05D003768 9.6e-07 57.4 102 35.3
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 9.6e-07 57.4 83 38.6
PSO675G1909 Papaver somniferum HOM05D008526 ORTHO05D010380 9.6e-07 57.4 122 32.0
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 1.6e-06 56.6 69 39.1
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.1e-06 56.2 28 85.7
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.1e-06 56.2 67 44.8
Aqoxy3G03529 Aquilegia oxysepala HOM05D007314 ORTHO05D003768 2.8e-06 55.8 113 29.2
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 2.8e-06 55.8 125 29.6
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 2.8e-06 55.8 118 33.1
FvH4_2g07142 Fragaria vesca HOM05D008321 ORTHO05D003768 3.6e-06 55.5 66 42.4
RcHm_v2.0_Chr7g0177401 Rosa chinensis HOM05D007314 ORTHO05D003768 3.6e-06 55.5 38 57.9
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 4.8e-06 55.1 109 30.3
FAN15G1405 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.8e-06 55.1 84 38.1
FvH4_3g32731 Fragaria vesca HOM05D008321 ORTHO05D003768 8.1e-06 54.3 110 35.5
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 8.1e-06 54.3 82 40.2


User provided reference genes

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