Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029314.2 Cucumis melo HOM05D003567 ORTHO05D004117 4.3e-156 554.7 292 100.0
CsaV3_1G039390 Cucumis sativus L. HOM05D003567 ORTHO05D004117 2.0e-89 333.2 226 80.1
ClCG03G016600 Citrullus lanatus HOM05D003567 ORTHO05D004117 6.6e-80 301.6 242 70.2
Sed0008957 Sechium edule HOM05D003567 ORTHO05D004117 9.2e-66 254.6 228 64.9
GSVIVG01022012001 Vitis vinifera HOM05D003567 ORTHO05D004117 4.3e-39 166.0 217 46.5
Dinv40231 Davidia involucrata HOM05D003567 ORTHO05D004117 4.8e-38 162.5 236 43.2
Actinidia30900 Actinidia chinensis HOM05D003567 ORTHO05D004117 7.6e-36 155.2 198 46.5
TAR365G0081 Trochodendron aralioides HOM05D003567 ORTHO05D004117 4.9e-35 152.5 215 43.7
Oeu033946.2 Olea europaea HOM05D003567 ORTHO05D004117 1.4e-34 151.0 193 46.6
Eucgr.H04432 Eucalyptus grandis HOM05D003567 ORTHO05D004117 7.1e-34 148.7 193 45.6
PGR031G3379 Punica granatum HOM05D003567 ORTHO05D004117 9.3e-34 148.3 195 42.6
Rhsim07G0178200 Rhododendron simsii HOM05D003567 ORTHO05D004117 7.9e-33 145.2 190 46.8
vmacro05046 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 1.8e-32 144.1 204 43.6
Nn3g21221 Nelumbo nucifera HOM05D003567 ORTHO05D004117 5.6e-31 139.0 219 41.6
Duzib106G0722 Durio zibethinus HOM05D003567 ORTHO05D004117 1.3e-30 137.9 223 37.7
PSO170G0922 Papaver somniferum HOM05D003567 ORTHO05D004117 8.1e-30 135.2 194 41.8
Aqoxy2G03162 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.9e-27 126.7 212 38.2
Nitab4.5_0000027g0510 Nicotiana tabacum HOM05D003567 ORTHO05D004117 9.3e-26 121.7 190 38.9
Aa31LG2G12110 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.6e-25 120.9 204 37.3
Migut.L01511 Erythranthe guttata HOM05D003567 ORTHO05D004117 2.7e-25 120.2 203 39.9
Cpa.g.sc84.116 Carica papaya HOM05D003567 ORTHO05D004117 7.9e-25 118.6 214 35.0
THA.LOC104805845 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 2.3e-24 117.1 195 36.9
SGA_v2.0_scaffold21G09406 Striga asiatica HOM05D003567 ORTHO05D004117 3.0e-24 116.7 194 40.7
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 5.1e-24 115.9 224 37.5
PSO302G0249 Papaver somniferum HOM05D003567 ORTHO05D004117 6.7e-24 115.5 192 37.0
SalBow1G7230 Salvia bowleyana HOM05D003567 ORTHO05D004117 8.7e-24 115.2 196 39.8
Solyc08g042140.3 Solanum lycopersicum HOM05D003567 ORTHO05D004117 1.1e-23 114.8 190 37.4
Sopen08g012740 Solanum pennellii HOM05D003567 ORTHO05D004117 1.5e-23 114.4 190 37.4
Nitab4.5_0006272g0050 Nicotiana tabacum HOM05D003567 ORTHO05D004117 1.9e-23 114.0 190 38.4
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 1.3e-22 111.3 218 35.3
Prupe.6G333000 Prunus persica HOM05D003567 ORTHO05D004117 1.6e-22 110.9 221 35.3
Gohir.A11G260300 Gossypium hirsutum HOM05D003567 ORTHO05D004117 2.1e-22 110.5 210 37.1
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 2.8e-22 110.2 217 36.4
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 3.7e-22 109.8 216 34.7
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 4.8e-22 109.4 230 34.8
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 6.2e-22 109.0 224 35.3
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 6.2e-22 109.0 224 35.3
Lsat_1_v5_gn_5_39020 Lactuca sativa HOM05D003567 ORTHO05D004117 6.2e-22 109.0 206 37.4
THA.LOC104802813 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 6.2e-22 109.0 225 34.2
arahy.Tifrunner.gnm1.ann1.86SZEE Arachis hypogaea HOM05D003567 ORTHO05D004117 1.8e-21 107.5 218 34.4
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 1.8e-21 107.5 253 35.2
Dinv22925 Davidia involucrata HOM05D003567 ORTHO05D004117 2.4e-21 107.1 223 34.1
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 2.4e-21 107.1 229 33.6
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 2.4e-21 107.1 214 34.6
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 3.1e-21 106.7 231 32.9
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 3.1e-21 106.7 231 32.9
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 3.1e-21 106.7 238 32.8
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 3.1e-21 106.7 224 34.8
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 3.1e-21 106.7 224 34.8
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 3.1e-21 106.7 232 33.2
Thhalv10023619m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 6.9e-21 105.5 204 35.3
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 9.0e-21 105.1 238 31.9
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 1.2e-20 104.8 220 33.2
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 1.2e-20 104.8 238 32.4
Oeu025239.1 Olea europaea HOM05D003567 ORTHO05D004117 1.2e-20 104.8 215 34.4
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 1.5e-20 104.4 236 33.5
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 1.5e-20 104.4 226 33.6
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 1.5e-20 104.4 217 34.1
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 1.5e-20 104.4 215 34.9
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 1.5e-20 104.4 217 34.6
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 1.5e-20 104.4 219 32.4
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 1.5e-20 104.4 213 33.8
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 2.6e-20 103.6 231 32.5
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 2.6e-20 103.6 233 32.6
Atru.chr2.536 Acer truncatum HOM05D003567 ORTHO05D004117 3.4e-20 103.2 214 33.6
arahy.Tifrunner.gnm1.ann1.BBX3WJ Arachis hypogaea HOM05D003567 ORTHO05D004117 3.4e-20 103.2 228 34.2
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 3.4e-20 103.2 227 34.8
Cfa006520 Carpinus fangiana HOM05D003567 ORTHO05D004117 4.5e-20 102.8 229 32.8
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 5.8e-20 102.4 231 32.5
TPR.G21793 Trifolium pratense HOM05D003567 ORTHO05D004117 5.8e-20 102.4 231 33.3
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 7.6e-20 102.1 230 32.2
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 7.6e-20 102.1 212 33.0
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 1.0e-19 101.7 231 32.5
DCAR_003305 Daucus carota HOM05D003567 ORTHO05D004117 1.0e-19 101.7 219 38.8
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 1.0e-19 101.7 218 33.5
SpUn0002_0170 Schrenkiella parvula HOM05D003567 ORTHO05D004117 1.0e-19 101.7 205 35.1
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 1.0e-19 101.7 212 33.0
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 1.3e-19 101.3 231 32.0
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 1.3e-19 101.3 213 33.8
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.7e-19 100.9 214 34.1
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.7e-19 100.9 214 34.1
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 1.7e-19 100.9 216 33.3
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 2.2e-19 100.5 230 32.2
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 2.2e-19 100.5 214 32.2
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 2.2e-19 100.5 244 32.4
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 2.2e-19 100.5 218 33.0
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 2.9e-19 100.1 215 34.9
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 2.9e-19 100.1 229 32.3
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 3.8e-19 99.8 212 33.0
CiPaw.08G174900 Carya illinoinensis HOM05D003567 ORTHO05D004117 3.8e-19 99.8 228 33.8
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 3.8e-19 99.8 223 32.7
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 4.9e-19 99.4 243 30.9
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 4.9e-19 99.4 231 31.6
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 4.9e-19 99.4 231 31.6
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 4.9e-19 99.4 213 32.4
CAN.G566.56 Capsicum annuum HOM05D003567 ORTHO05D004117 6.5e-19 99.0 211 32.2
ECA246G0369 Erigeron canadensis HOM05D003567 ORTHO05D004117 6.5e-19 99.0 208 33.2
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 8.4e-19 98.6 230 33.0
CARHR055820 Cardamine hirsuta HOM05D003567 ORTHO05D004117 1.4e-18 97.8 205 32.7
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 1.4e-18 97.8 216 33.8
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 1.4e-18 97.8 216 31.9
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.2e-18 96.3 209 32.5
PSO170G0105 Papaver somniferum HOM05D003567 ORTHO05D004117 4.2e-18 96.3 227 33.5
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 5.5e-18 95.9 220 30.9
Lj9A677G34 Lonicera japonica HOM05D003567 ORTHO05D004117 7.1e-18 95.5 192 38.0
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 7.1e-18 95.5 208 33.7
AL1G65120 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 9.3e-18 95.1 204 34.8
AL7G51030 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 9.3e-18 95.1 204 34.8
SEGI_02572 Sequoiadendron giganteum HOM05D003567 ORTHO05D004117 9.3e-18 95.1 212 32.1
Nn3g21224 Nelumbo nucifera HOM05D003567 ORTHO05D004117 1.2e-17 94.7 213 32.9
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 1.2e-17 94.7 213 31.9
CiPaw.08G170300 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.6e-17 94.4 199 32.2
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 2.1e-17 94.0 231 29.9
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 2.7e-17 93.6 216 32.4
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 2.7e-17 93.6 265 31.7
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 4.6e-17 92.8 196 34.7
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 4.6e-17 92.8 214 32.2
BcaB04g20139 Brassica carinata HOM05D003567 ORTHO05D004117 7.9e-17 92.0 213 31.9
AT1G54680 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 1.0e-16 91.7 205 32.7
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 1.0e-16 91.7 204 32.4
A01p27100 Brassica napus HOM05D003567 ORTHO05D004117 1.3e-16 91.3 214 31.3
Carub.0002s0892 Capsella rubella HOM05D003567 ORTHO05D004117 1.3e-16 91.3 215 32.1
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 1.8e-16 90.9 217 33.6
C01p34500 Brassica napus HOM05D003567 ORTHO05D004117 2.3e-16 90.5 214 31.8
BolC1t03421H Brassica oleracea HOM05D003567 ORTHO05D004117 2.3e-16 90.5 214 31.8
BraA01t02844Z Brassica rapa HOM05D003567 ORTHO05D004117 2.3e-16 90.5 213 31.5
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.3e-16 90.5 197 32.0
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 3.9e-16 89.7 224 29.9
BcaC09g49610 Brassica carinata HOM05D003567 ORTHO05D004117 3.9e-16 89.7 191 33.5
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 3.9e-16 89.7 197 33.5
SGA_v2.0_scaffold21G09407 Striga asiatica HOM05D003567 ORTHO05D004117 3.9e-16 89.7 192 33.9
Haze_04266 Corylus avellana HOM05D003567 ORTHO05D004117 1.1e-15 88.2 244 31.1
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 1.9e-15 87.4 212 29.2
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 5.7e-15 85.9 223 29.6
BcaC05g25942 Brassica carinata HOM05D003567 ORTHO05D004117 9.7e-15 85.1 188 32.4
Os01g0382700 Oryza sativa ssp. japonica HOM05D003567 ORTHO05D004117 9.7e-15 85.1 216 31.9
MSTRG.10546 Avicennia marina HOM05D003567 ORTHO05D004117 1.3e-14 84.7 56 62.5
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 2.1e-14 84.0 241 30.3
PSO302G0180 Papaver somniferum HOM05D003567 ORTHO05D004117 2.8e-14 83.6 222 30.6
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 2.8e-14 83.6 228 30.3
PSO170G3637 Papaver somniferum HOM05D003567 ORTHO05D004117 3.7e-14 83.2 222 30.2
ATR0487G007 Amborella trichopoda HOM05D003567 ORTHO05D004117 4.8e-14 82.8 209 30.1
Peaxi162Scf00071g00838 Petunia axillaris HOM05D003567 ORTHO05D004117 6.3e-14 82.4 67 56.7
Cc02_g32790 Coffea canephora HOM05D003567 ORTHO05D004117 1.4e-13 81.3 90 52.2
unitig_578.g16416 Utricularia gibba HOM05D003567 ORTHO05D004117 2.4e-13 80.5 215 29.8
Cc02_g32780 Coffea canephora HOM05D003567 ORTHO05D004117 3.1e-13 80.1 65 52.3
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.6e-12 75.5 211 28.4
CBR_g53664 Chara braunii HOM05D003567 ORTHO05D004117 1.7e-11 74.3 225 29.3
C05p18930 Brassica napus HOM05D003567 ORTHO05D004117 2.2e-11 73.9 192 29.7
HanXRQChr12g0379821 Helianthus annuus HOM05D003567 ORTHO05D004117 2.9e-11 73.6 195 30.3
SMO367G0890 Selaginella moellendorffii HOM05D003567 ORTHO05D004117 1.4e-10 71.2 206 29.6
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 5.5e-10 69.3 77 48.1
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 4.6e-09 66.2 87 42.5
CiPaw.08G171000 Carya illinoinensis HOM05D003567 ORTHO05D004117 7.9e-09 65.5 171 31.0
MBI10_g29587_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 3.9e-08 63.2 93 41.9
CiPaw.08G169600 Carya illinoinensis HOM05D003567 ORTHO05D004117 5.1e-08 62.8 153 30.7
CiPaw.08G176400 Carya illinoinensis HOM05D003567 ORTHO05D004117 6.7e-08 62.4 153 29.4
MSTRG.10545 Avicennia marina HOM05D003567 ORTHO05D004117 1.5e-07 61.2 94 40.4
AUR62025002 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.3e-07 60.1 149 28.9
AUR62030520 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.3e-07 60.1 149 28.9
AUR62032573 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.3e-07 60.1 149 28.9
AUR62037588 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.3e-07 60.1 149 28.9
DCAR_031426 Daucus carota HOM05D002608 ORTHO05D013040 3.3e-07 60.1 42 59.5
CiPaw.08G171500 Carya illinoinensis HOM05D003567 ORTHO05D004117 4.3e-07 59.7 173 30.6
AagrBONN_evm.TU.Sc2ySwM_344.4623 Anthoceros agrestis HOM05D003567 ORTHO05D004117 1.3e-06 58.2 71 43.7
Actinidia19813 Actinidia chinensis HOM05D003567 ORTHO05D004117 1.6e-06 57.8 217 26.7
AUR62043825 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.6e-06 57.8 166 27.1


User provided reference genes

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