Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.0e-56 222.2 115 100.0
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 9.9e-48 193.4 107 91.6
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.4e-46 188.7 115 87.0
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.0e-36 156.8 95 86.3
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 5.3e-33 144.4 96 80.2
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.2e-32 143.3 96 79.2
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 4.5e-32 141.4 96 78.1
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 4.5e-32 141.4 96 78.1
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.0e-31 140.2 95 78.9
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 1.3e-31 139.8 95 77.9
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.3e-31 139.8 95 80.0
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.3e-31 139.8 92 77.2
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.7e-31 139.4 95 74.7
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.7e-31 139.4 95 75.8
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.9e-31 137.9 95 73.7
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 8.4e-31 137.1 95 74.7
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 8.4e-31 137.1 95 76.8
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.4e-30 136.3 95 73.7
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.4e-30 136.3 95 73.7
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.9e-30 136.0 95 74.7
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.9e-30 136.0 95 73.7
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.9e-30 136.0 95 73.7
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.9e-30 136.0 95 74.7
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 2.5e-30 135.6 95 73.7
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 4.2e-30 134.8 95 76.8
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 4.2e-30 134.8 95 76.8
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 4.2e-30 134.8 95 76.8
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 7.1e-30 134.0 95 75.8
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 3.5e-29 131.7 94 74.5
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 4.6e-29 131.3 93 76.3
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 6.0e-29 131.0 95 70.5
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 7.9e-29 130.6 95 72.6
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 7.9e-29 130.6 111 67.6
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 2.3e-28 129.0 95 69.5
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 2.3e-28 129.0 97 71.1
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 3.0e-28 128.6 91 73.6
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 3.0e-28 128.6 86 74.4
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.9e-28 128.3 95 68.4
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 5.1e-28 127.9 95 70.5
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 5.1e-28 127.9 95 71.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 6.7e-28 127.5 96 71.9
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.1e-27 126.7 97 74.2
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.1e-27 126.7 95 67.4
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.1e-27 126.7 95 67.4
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.5e-27 126.3 95 69.5
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 4.3e-27 124.8 91 72.5
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 9.6e-27 123.6 85 71.8
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.3e-26 123.2 102 66.7
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.6e-26 122.9 96 68.8
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 2.1e-26 122.5 95 69.5
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 6.3e-26 120.9 103 64.1
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 8.2e-26 120.6 101 67.3
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.4e-25 119.8 95 67.4
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.1e-25 118.6 95 63.2
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 4.1e-25 118.2 96 66.7
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 4.1e-25 118.2 94 70.2
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 4.1e-25 118.2 94 69.1
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 5.3e-25 117.9 106 65.1
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 6.9e-25 117.5 95 65.3
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.9e-25 117.5 101 63.4
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 9.0e-25 117.1 94 69.1
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.5e-24 116.3 104 63.5
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.6e-24 115.5 102 64.7
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 5.9e-24 114.4 75 77.3
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 7.6e-24 114.0 104 60.6
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 7.6e-24 114.0 105 60.0
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.0e-23 113.6 100 62.0
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 1.0e-23 113.6 96 65.6
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.3e-23 113.2 102 62.7
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.7e-23 112.8 95 63.2
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.7e-23 112.8 94 68.1
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.7e-23 112.8 105 59.0
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.2e-23 112.5 95 63.2
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.2e-23 112.5 95 63.2
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 2.2e-23 112.5 102 60.8
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 2.2e-23 112.5 95 65.3
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.2e-23 112.5 102 65.7
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.9e-23 112.1 95 64.2
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.9e-23 112.1 100 58.0
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 2.9e-23 112.1 97 66.0
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.8e-23 111.7 106 58.5
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.0e-23 111.3 95 65.3
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 5.0e-23 111.3 83 69.9
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 5.0e-23 111.3 105 61.0
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 5.0e-23 111.3 102 61.8
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 6.5e-23 110.9 103 62.1
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.1e-22 110.2 105 61.0
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.4e-22 109.8 105 60.0
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 2.5e-22 109.0 105 59.0
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 3.2e-22 108.6 106 55.7
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.2e-22 108.6 102 60.8
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.5e-22 107.8 95 65.3
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 9.3e-22 107.1 95 64.2
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 9.3e-22 107.1 95 64.2
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.2e-21 106.7 106 58.5
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.2e-21 106.7 71 76.1
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.6e-21 106.3 95 63.2
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 2.1e-21 105.9 101 56.4
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.1e-21 105.9 102 57.8
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 2.7e-21 105.5 92 63.0
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.7e-21 105.5 120 54.2
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 3.5e-21 105.1 94 61.7
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-21 105.1 96 61.5
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 4.6e-21 104.8 105 59.0
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 6.1e-21 104.4 95 60.0
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.1e-21 104.4 72 72.2
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 6.1e-21 104.4 105 59.0
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 7.9e-21 104.0 102 59.8
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 7.9e-21 104.0 95 60.0
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.0e-20 103.6 101 59.4
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.0e-20 103.6 96 61.5
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.0e-20 103.6 96 61.5
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.0e-20 103.6 104 54.8
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.0e-20 103.6 105 59.0
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.0e-20 103.6 104 56.7
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 1.3e-20 103.2 95 64.2
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.3e-20 103.2 105 59.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.8e-20 102.8 76 68.4
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 1.8e-20 102.8 95 62.1
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.8e-20 102.8 106 58.5
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.3e-20 102.4 95 57.9
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 3.9e-20 101.7 95 58.9
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.9e-20 101.7 95 62.1
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.1e-20 101.3 94 58.5
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 8.7e-20 100.5 96 59.4
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 8.7e-20 100.5 96 59.4
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 8.7e-20 100.5 96 59.4
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 8.7e-20 100.5 102 57.8
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.1e-19 100.1 94 58.5
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-19 100.1 96 61.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-19 100.1 95 61.1
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.1e-19 100.1 94 58.5
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 2.5e-19 99.0 93 60.2
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 2.5e-19 99.0 80 68.8
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 2.5e-19 99.0 104 54.8
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.3e-19 98.6 83 65.1
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 3.3e-19 98.6 103 56.3
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.3e-19 98.6 95 56.8
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.3e-19 98.6 94 58.5
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 4.3e-19 98.2 96 59.4
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 4.3e-19 98.2 95 60.0
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 4.3e-19 98.2 96 59.4
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 7.4e-19 97.4 96 57.3
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 7.4e-19 97.4 113 49.6
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 7.4e-19 97.4 86 59.3
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 7.4e-19 97.4 105 59.0
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 9.7e-19 97.1 96 58.3
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 9.7e-19 97.1 96 58.3
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.6e-18 96.3 103 58.3
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-18 95.9 96 58.3
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.2e-18 95.9 96 58.3
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.2e-18 95.9 96 58.3
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.2e-18 95.9 97 53.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.8e-18 95.5 95 60.0
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 4.8e-18 94.7 103 55.3
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 4.8e-18 94.7 81 64.2
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 6.3e-18 94.4 103 56.3
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 6.3e-18 94.4 81 64.2
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 6.3e-18 94.4 81 64.2
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.4e-17 93.2 70 71.4
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.4e-17 93.2 82 61.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.4e-17 93.2 97 55.7
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 3.1e-17 92.0 96 55.2
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 3.1e-17 92.0 96 55.2
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 3.1e-17 92.0 100 55.0
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 6.9e-17 90.9 96 54.2
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 1.5e-16 89.7 98 57.1
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.0e-16 89.4 96 54.2
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.0e-16 89.4 96 54.2
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 3.4e-16 88.6 81 61.7
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 3.4e-16 88.6 81 61.7
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 4.5e-16 88.2 105 54.3
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 5.9e-16 87.8 81 60.5
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 5.9e-16 87.8 74 64.9
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 2.2e-15 85.9 98 51.0
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 6.5e-15 84.3 74 54.1
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 2.5e-14 82.4 65 63.1
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 4.6e-13 78.2 79 54.4
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 3.0e-12 75.5 85 49.4
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 8.8e-12 73.9 86 48.8
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 9.7e-11 70.5 83 53.0
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 4.8e-10 68.2 74 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 3.1e-09 65.5 51 56.9
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 2.0e-08 62.8 91 47.3
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 1.7e-07 59.7 69 47.8
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 9.4e-06 53.9 62 56.5


User provided reference genes

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