Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029218.2 Cucumis melo HOM05D040423 ORTHO05D001359 3.0e-96 355.1 177 100.0
MELO3C032217.2 Cucumis melo HOM05D048030 ORTHO05D168340 6.5e-22 108.2 118 58.5
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 3.0e-19 99.4 115 52.2
Thecc.01G039900 Theobroma cacao HOM05D001459 ORTHO05D001359 1.9e-18 96.7 81 61.7
CiPaw.02G015400 Carya illinoinensis HOM05D001459 ORTHO05D001359 7.4e-18 94.7 144 43.1
ClCG01G019360 Citrullus lanatus HOM05D001459 ORTHO05D001359 7.4e-18 94.7 87 58.6
Duzib187G0107 Durio zibethinus HOM05D001459 ORTHO05D001359 7.4e-18 94.7 71 64.8
Cpa.g.sc158.7 Carica papaya HOM05D001459 ORTHO05D001359 1.3e-17 94.0 116 48.3
CsaV3_6G046080 Cucumis sativus L. HOM05D001459 ORTHO05D001359 1.3e-17 94.0 87 58.6
RcHm_v2.0_Chr2g0102191 Rosa chinensis HOM05D001459 ORTHO05D001359 1.3e-17 94.0 121 46.3
TWI09G0088 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.3e-17 94.0 86 57.0
COL.COLO4_22118 Corchorus olitorius HOM05D001459 ORTHO05D001359 1.6e-17 93.6 70 62.9
Duzib147G1182 Durio zibethinus HOM05D001459 ORTHO05D001359 1.6e-17 93.6 89 57.3
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.6e-17 93.6 88 56.8
MELO3C007811.2 Cucumis melo HOM05D001459 ORTHO05D001359 2.1e-17 93.2 86 58.1
Glyma.02G058800 Glycine max HOM05D001459 ORTHO05D001359 2.8e-17 92.8 113 46.9
Manes.13G136900 Manihot esculenta HOM05D001459 ORTHO05D001359 2.8e-17 92.8 88 54.5
Sabra07G0025300 Salix brachista HOM05D001459 ORTHO05D001359 2.8e-17 92.8 86 59.3
Glyma.16G141500 Glycine max HOM05D001459 ORTHO05D001359 3.7e-17 92.4 92 53.3
Gohir.A11G186100 Gossypium hirsutum HOM05D001459 ORTHO05D001359 4.8e-17 92.0 57 73.7
Ciclev10025963m.g Citrus clementina HOM05D001459 ORTHO05D001359 8.2e-17 91.3 65 64.6
arahy.Tifrunner.gnm1.ann1.AVA03Z Arachis hypogaea HOM05D001459 ORTHO05D001359 1.4e-16 90.5 114 46.5
arahy.Tifrunner.gnm1.ann1.J541GW Arachis hypogaea HOM05D001459 ORTHO05D001359 1.4e-16 90.5 115 47.0
THA.LOC104807546 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 1.8e-16 90.1 111 46.8
Actinidia36544 Actinidia chinensis HOM05D001459 ORTHO05D001359 2.4e-16 89.7 122 45.9
Duzib264G0166 Durio zibethinus HOM05D001459 ORTHO05D001359 2.4e-16 89.7 99 52.5
CiPaw.01G034500 Carya illinoinensis HOM05D001459 ORTHO05D001359 3.1e-16 89.4 89 55.1
Lj4g0000001 Lotus japonicus HOM05D001459 ORTHO05D001359 3.1e-16 89.4 87 54.0
Gohir.D11G192700 Gossypium hirsutum HOM05D001459 ORTHO05D001359 4.1e-16 89.0 57 71.9
Gorai.007G205700 Gossypium raimondii HOM05D001459 ORTHO05D001359 4.1e-16 89.0 57 71.9
Lj2g0001412 Lotus japonicus HOM05D001459 ORTHO05D001359 4.1e-16 89.0 116 46.6
Potri.007G029400 Populus trichocarpa HOM05D001459 ORTHO05D001359 4.1e-16 89.0 86 55.8
VMungo0251G2841 Vigna mungo HOM05D001459 ORTHO05D001359 4.1e-16 89.0 84 52.4
Atru.chr3.533 Acer truncatum HOM05D001459 ORTHO05D001359 5.3e-16 88.6 48 75.0
Ca_26385_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 5.3e-16 88.6 88 53.4
CANSAT01G1094 Cannabis sativa HOM05D001459 ORTHO05D001359 9.0e-16 87.8 87 55.2
CAN.G358.125 Capsicum annuum HOM05D001459 ORTHO05D001359 9.0e-16 87.8 117 48.7
Nitab4.5_0001279g0170 Nicotiana tabacum HOM05D001459 ORTHO05D001359 9.0e-16 87.8 115 49.6
Sed0015500 Sechium edule HOM05D001459 ORTHO05D001359 1.2e-15 87.4 106 46.2
Eucgr.H01256 Eucalyptus grandis HOM05D001459 ORTHO05D001359 1.5e-15 87.0 83 56.6
Phvul.003G252000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 1.5e-15 87.0 87 51.7
Prupe.7G150700 Prunus persica HOM05D001459 ORTHO05D001359 1.5e-15 87.0 96 50.0
Actinidia12110 Actinidia chinensis HOM05D001459 ORTHO05D001359 2.0e-15 86.7 122 43.4
MELO3C032216.2 Cucumis melo HOM05D001459 ORTHO05D001359 2.6e-15 86.3 43 86.0
Dinv39958 Davidia involucrata HOM05D001459 ORTHO05D001359 2.6e-15 86.3 86 58.1
Hma1.2p1_0652F.1_g195860 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.6e-15 86.3 120 44.2
Psat4g091720 Pisum sativum HOM05D001459 ORTHO05D001359 2.6e-15 86.3 92 52.2
TAR625G0297 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.6e-15 86.3 59 64.4
ECA232G3366 Erigeron canadensis HOM05D001459 ORTHO05D001359 3.4e-15 85.9 119 43.7
HanXRQChr11g0338871 Helianthus annuus HOM05D001459 ORTHO05D001359 3.4e-15 85.9 48 75.0
Lalb_Chr05g0227641 Lupinus albus HOM05D001459 ORTHO05D001359 3.4e-15 85.9 65 60.0
MD15G1266700 Malus domestica HOM05D001459 ORTHO05D001359 3.4e-15 85.9 117 43.6
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 3.4e-15 85.9 117 48.7
GSVIVG01019009001 Vitis vinifera HOM05D001459 ORTHO05D001359 3.4e-15 85.9 65 60.0
Sopen02g030280 Solanum pennellii HOM05D001459 ORTHO05D001359 4.5e-15 85.5 117 47.0
Medtr8g077950 Medicago truncatula HOM05D001459 ORTHO05D001359 5.8e-15 85.1 88 48.9
Oeu037894.1 Olea europaea HOM05D001459 ORTHO05D001359 7.6e-15 84.7 89 53.9
QL06p045359 Quercus lobata HOM05D001459 ORTHO05D001359 1.0e-14 84.3 86 51.2
Nitab4.5_0002128g0040 Nicotiana tabacum HOM05D001459 ORTHO05D001359 1.3e-14 84.0 117 46.2
TPR.G20292 Trifolium pratense HOM05D001459 ORTHO05D001359 1.7e-14 83.6 88 48.9
ECA246G3405 Erigeron canadensis HOM05D001788 ORTHO05D006995 2.9e-14 82.8 48 72.9
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 3.8e-14 82.4 58 63.8
CSS0014466 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 5.0e-14 82.0 81 54.3
FAN26G2630 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.0e-14 82.0 95 48.4
Lj4C197T2 Lonicera japonica HOM05D001459 ORTHO05D001359 5.0e-14 82.0 48 72.9
Sc03g0000900 Simmondsia chinensis HOM05D001459 ORTHO05D001359 5.0e-14 82.0 83 47.0
Glyma.11G065000 Glycine max HOM05D001459 ORTHO05D001359 6.5e-14 81.6 113 47.8
Hma1.2p1_0203F.1_g086580 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 6.5e-14 81.6 122 41.8
Hma1.2p1_3707F.1_g337320 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 6.5e-14 81.6 121 43.0
Peaxi162Scf00427g00516 Petunia axillaris HOM05D001459 ORTHO05D001359 6.5e-14 81.6 117 49.6
Hund16578 Selenicereus undatus HOM05D001459 ORTHO05D001359 6.5e-14 81.6 86 51.2
FAN23G1882 Fragaria x ananassa HOM05D001459 ORTHO05D001359 8.4e-14 81.3 95 48.4
GSVIVG01009665001 Vitis vinifera HOM05D001459 ORTHO05D001359 8.4e-14 81.3 84 50.0
Sopen02g013990 Solanum pennellii HOM05D001459 ORTHO05D001359 1.1e-13 80.9 89 50.6
BcaC01g00445 Brassica carinata HOM05D001459 ORTHO05D001359 1.4e-13 80.5 110 43.6
C03p79920 Brassica napus HOM05D001459 ORTHO05D001359 1.4e-13 80.5 110 43.6
BolC3t20245H Brassica oleracea HOM05D001459 ORTHO05D001359 1.4e-13 80.5 110 45.5
FvH4_1g13880 Fragaria vesca HOM05D001459 ORTHO05D001359 1.4e-13 80.5 95 47.4
FAN19G1027 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.4e-13 80.5 95 47.4
Cfa004278 Carpinus fangiana HOM05D000088 ORTHO05D001217 1.9e-13 80.1 86 53.5
Haze_15122 Corylus avellana HOM05D001459 ORTHO05D001359 1.9e-13 80.1 94 51.1
Nitab4.5_0003410g0090 Nicotiana tabacum HOM05D001459 ORTHO05D001359 1.9e-13 80.1 48 70.8
HanXRQChr17g0563711 Helianthus annuus HOM05D001459 ORTHO05D001359 2.5e-13 79.7 99 44.4
AUR62003183 Chenopodium quinoa HOM05D001459 ORTHO05D001359 3.2e-13 79.3 62 59.7
AUR62008004 Chenopodium quinoa HOM05D001459 ORTHO05D001359 3.2e-13 79.3 62 59.7
Migut.L00297 Erythranthe guttata HOM05D001459 ORTHO05D001359 3.2e-13 79.3 91 52.7
A08p22380 Brassica napus HOM05D001459 ORTHO05D001359 4.2e-13 79.0 110 42.7
BraA08t34195Z Brassica rapa HOM05D001459 ORTHO05D001359 4.2e-13 79.0 110 42.7
FAN28G1442 Fragaria x ananassa HOM05D001459 ORTHO05D001359 4.2e-13 79.0 86 47.7
Nn5g29526 Nelumbo nucifera HOM05D001459 ORTHO05D001359 4.2e-13 79.0 84 48.8
Nn5g29527 Nelumbo nucifera HOM05D001459 ORTHO05D001359 4.2e-13 79.0 84 48.8
AT4G36730 Arabidopsis thaliana HOM05D001459 ORTHO05D001359 7.2e-13 78.2 110 41.8
MSTRG.15280 Avicennia marina HOM05D001459 ORTHO05D001359 7.2e-13 78.2 84 52.4
Cc07_g09170 Coffea canephora HOM05D001459 ORTHO05D001359 7.2e-13 78.2 83 48.2
MELO3C027812.2 Cucumis melo HOM05D040423 ORTHO05D171337 7.2e-13 78.2 94 56.4
Glyma.01G177400 Glycine max HOM05D001459 ORTHO05D001359 7.2e-13 78.2 89 53.9
Gohir.A12G065466 Gossypium hirsutum HOM05D001459 ORTHO05D001359 7.2e-13 78.2 92 51.1
Gorai.008G068900 Gossypium raimondii HOM05D001459 ORTHO05D001359 7.2e-13 78.2 92 51.1
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 7.2e-13 78.2 48 68.8
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 7.2e-13 78.2 90 50.0
BcaB03g12373 Brassica carinata HOM05D001459 ORTHO05D001359 9.3e-13 77.8 57 57.9
EL10Ac6g14910 Beta vulgaris HOM05D001459 ORTHO05D001359 1.2e-12 77.4 90 48.9
Thhalv10025733m.g Eutrema salsugineum HOM05D001459 ORTHO05D001359 1.2e-12 77.4 110 40.9
Lsat_1_v5_gn_3_78600 Lactuca sativa HOM05D001459 ORTHO05D001359 1.2e-12 77.4 107 43.0
Sp7g34390 Schrenkiella parvula HOM05D001459 ORTHO05D001359 1.6e-12 77.0 110 40.9
Solyc02g062950.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.6e-12 77.0 89 48.3
MSTRG.2753 Avicennia marina HOM05D001459 ORTHO05D001359 2.1e-12 76.6 89 49.4
Peaxi162Scf00008g00417 Petunia axillaris HOM05D001459 ORTHO05D001359 2.1e-12 76.6 89 50.6
CARHR245080 Cardamine hirsuta HOM05D001459 ORTHO05D001359 2.7e-12 76.3 110 40.9
Migut.H00187 Erythranthe guttata HOM05D001459 ORTHO05D001359 2.7e-12 76.3 91 48.4
Gohir.D12G065600 Gossypium hirsutum HOM05D001459 ORTHO05D001359 2.7e-12 76.3 92 50.0
BcaNung00705 Brassica carinata HOM05D001459 ORTHO05D001359 3.5e-12 75.9 109 40.4
C01p02370 Brassica napus HOM05D001459 ORTHO05D001359 3.5e-12 75.9 109 40.4
Sed0024040 Sechium edule HOM05D001459 ORTHO05D001359 3.5e-12 75.9 86 48.8
BolC1t00228H Brassica oleracea HOM05D001459 ORTHO05D001359 4.6e-12 75.5 109 40.4
MELO3C034906.2 Cucumis melo HOM05D040423 ORTHO05D169080 4.6e-12 75.5 93 53.8
A01p02180 Brassica napus HOM05D001459 ORTHO05D001359 6.1e-12 75.1 110 40.0
BraA01t00207Z Brassica rapa HOM05D001459 ORTHO05D001359 6.1e-12 75.1 110 40.0
CAN.G53.41 Capsicum annuum HOM05D001459 ORTHO05D001359 6.1e-12 75.1 89 47.2
THA.LOC104819800 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 6.1e-12 75.1 112 41.1
Nn1g05081 Nelumbo nucifera HOM05D001459 ORTHO05D001359 7.9e-12 74.7 86 50.0
Cfa004158 Carpinus fangiana HOM05D001459 ORTHO05D001359 1.0e-11 74.3 48 62.5
Carub.0007s0359 Capsella rubella HOM05D001459 ORTHO05D001359 1.3e-11 73.9 89 44.9
Ah.03g139290 Amaranthus hybridus HOM05D001459 ORTHO05D001359 2.3e-11 73.2 107 41.1
Aqoxy5G01683 Aquilegia oxysepala HOM05D001459 ORTHO05D001359 3.9e-11 72.4 115 39.1
AL7G14280 Arabidopsis lyrata HOM05D001459 ORTHO05D001359 5.1e-11 72.0 87 42.5
Rhsim08G0112800 Rhododendron simsii HOM05D001788 ORTHO05D006995 5.1e-11 72.0 90 45.6
Cfa010064 Carpinus fangiana HOM05D001459 ORTHO05D001359 1.5e-10 70.5 101 44.6
DCAR_025934 Daucus carota HOM05D001459 ORTHO05D001359 1.5e-10 70.5 98 43.9
PSO700G0112 Papaver somniferum HOM05D001459 ORTHO05D001359 1.9e-10 70.1 48 64.6
BcaNung04435 Brassica carinata HOM05D001459 ORTHO05D001359 3.3e-10 69.3 110 40.0
SEGI_12461 Sequoiadendron giganteum HOM05D001459 ORTHO05D001359 5.7e-10 68.6 50 68.0
Aa31LG8G15490 Aethionema arabicum HOM05D001459 ORTHO05D001359 7.4e-10 68.2 105 41.9
unitig_88.g27807 Utricularia gibba HOM05D001459 ORTHO05D001359 6.3e-09 65.1 43 65.1
SGA_v2.0_scaffold33G13393 Striga asiatica HOM05D001459 ORTHO05D001359 1.1e-08 64.3 86 45.3
ATR0733G172 Amborella trichopoda HOM05D001459 ORTHO05D001359 4.1e-08 62.4 89 48.3
Cfa019338 Carpinus fangiana HOM05D001459 ORTHO05D001359 5.3e-08 62.0 104 40.4
PSO170G2342 Papaver somniferum HOM05D001459 ORTHO05D001359 5.3e-08 62.0 48 58.3
Lalb_Chr09g0333611 Lupinus albus HOM05D001459 ORTHO05D001359 6.9e-08 61.6 112 35.7
Aa31LG6G13540 Aethionema arabicum HOM05D001459 ORTHO05D001359 1.2e-07 60.8 141 34.0
MELO3C029141.2 Cucumis melo HOM05D001459 ORTHO05D001359 1.5e-07 60.5 29 86.2
ECA238G4073 Erigeron canadensis HOM05D001459 ORTHO05D001359 7.7e-07 58.2 125 33.6
SEGI_34798 Sequoiadendron giganteum HOM05D001459 ORTHO05D001359 1.0e-06 57.8 61 50.8
MELO3C034694.2 Cucumis melo HOM05D000872 ORTHO05D022478 2.2e-06 56.6 34 76.5
HanXRQChr11g0324881 Helianthus annuus HOM05D001459 ORTHO05D001359 3.8e-06 55.8 79 38.0
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 8.5e-06 54.7 122 39.3


User provided reference genes

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