Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028909.2 Cucumis melo HOM05D007127 ORTHO05D008803 7.1e-116 420.6 213 100.0
CsaV3_7G023830 Cucumis sativus L. HOM05D007127 ORTHO05D008803 5.6e-28 128.6 65 95.4
ClCG09G021550 Citrullus lanatus HOM05D007127 ORTHO05D008803 1.6e-27 127.1 65 93.8
DCAR_013258 Daucus carota HOM05D007127 ORTHO05D008803 2.3e-26 123.2 65 90.8
QL08p002654 Quercus lobata HOM05D007127 ORTHO05D008803 8.9e-26 121.3 70 82.9
Nn1g07579 Nelumbo nucifera HOM05D007127 ORTHO05D008803 1.2e-25 120.9 65 86.2
CANSAT11G1343 Cannabis sativa HOM05D007127 ORTHO05D008803 2.6e-25 119.8 65 86.2
Ciclev10009425m.g Citrus clementina HOM05D007127 ORTHO05D008803 2.6e-25 119.8 65 87.7
CARHR234140 Cardamine hirsuta HOM05D007127 ORTHO05D008803 4.4e-25 119.0 70 81.4
AUR62017126 Chenopodium quinoa HOM05D007127 ORTHO05D008803 4.4e-25 119.0 102 59.8
AUR62035684 Chenopodium quinoa HOM05D007127 ORTHO05D008803 4.4e-25 119.0 102 59.8
AL7G26340 Arabidopsis lyrata HOM05D007127 ORTHO05D008803 5.7e-25 118.6 70 80.0
AT4G26555 Arabidopsis thaliana HOM05D007127 ORTHO05D008803 5.7e-25 118.6 70 80.0
CAN.G492.47 Capsicum annuum HOM05D007127 ORTHO05D008803 5.7e-25 118.6 65 84.6
Haze_09871 Corylus avellana HOM05D007127 ORTHO05D008803 5.7e-25 118.6 63 85.7
Thhalv10026261m.g Eutrema salsugineum HOM05D007127 ORTHO05D008803 5.7e-25 118.6 65 84.6
PSO210G6734 Papaver somniferum HOM05D007127 ORTHO05D008803 5.7e-25 118.6 65 83.1
Atru.BG.133.p Acer truncatum HOM05D007127 ORTHO05D008803 7.5e-25 118.2 65 83.1
Cpa.g.sc12.104 Carica papaya HOM05D007127 ORTHO05D008803 7.5e-25 118.2 65 81.5
Potri.001G467100 Populus trichocarpa HOM05D007127 ORTHO05D008803 9.8e-25 117.9 65 83.1
Sp7g24510 Schrenkiella parvula HOM05D007127 ORTHO05D008803 9.8e-25 117.9 65 84.6
BcaC06g32738 Brassica carinata HOM05D007127 ORTHO05D008803 1.3e-24 117.5 63 87.3
BolC7t45986H Brassica oleracea HOM05D000491 ORTHO05D000359 1.3e-24 117.5 63 87.3
BraA03t14746Z Brassica rapa HOM05D000491 ORTHO05D000359 1.3e-24 117.5 63 87.3
Aa31LG5G11910 Aethionema arabicum HOM05D007127 ORTHO05D008803 1.7e-24 117.1 65 83.1
Carub.0007s1432 Capsella rubella HOM05D007127 ORTHO05D008803 1.7e-24 117.1 63 85.7
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 1.7e-24 117.1 64 85.9
Gohir.A01G094000 Gossypium hirsutum HOM05D007127 ORTHO05D008803 2.2e-24 116.7 70 81.4
Gohir.D01G078500 Gossypium hirsutum HOM05D007127 ORTHO05D008803 2.2e-24 116.7 70 81.4
MD03G1036700 Malus domestica HOM05D007127 ORTHO05D008803 2.2e-24 116.7 65 86.2
Solyc10g005870.4 Solanum lycopersicum HOM05D007127 ORTHO05D008803 2.2e-24 116.7 65 83.1
Sopen10g001820 Solanum pennellii HOM05D007127 ORTHO05D008803 2.2e-24 116.7 65 83.1
Actinidia10571 Actinidia chinensis HOM05D007127 ORTHO05D008803 2.9e-24 116.3 65 83.1
Thecc.07G007600 Theobroma cacao HOM05D007127 ORTHO05D008803 2.9e-24 116.3 70 81.4
MSTRG.7016 Avicennia marina HOM05D007127 ORTHO05D008803 3.7e-24 115.9 65 81.5
PGR031G3625 Punica granatum HOM05D007127 ORTHO05D008803 3.7e-24 115.9 65 83.1
RcHm_v2.0_Chr5g0075491 Rosa chinensis HOM05D007127 ORTHO05D008803 3.7e-24 115.9 65 84.6
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 3.7e-24 115.9 65 84.6
Peaxi162Scf00339g00004 Petunia axillaris HOM05D007127 ORTHO05D008803 4.9e-24 115.5 65 83.1
TPR.G17936 Trifolium pratense HOM05D007127 ORTHO05D008803 4.9e-24 115.5 65 81.5
ATR0751G120 Amborella trichopoda HOM05D007127 ORTHO05D008803 6.4e-24 115.2 65 80.0
EL10Ac4g07544 Beta vulgaris HOM05D007127 ORTHO05D008803 6.4e-24 115.2 70 80.0
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 6.4e-24 115.2 65 83.1
Sabra16G0317000 Salix brachista HOM05D007127 ORTHO05D008803 6.4e-24 115.2 65 80.0
Lsat_1_v5_gn_5_2120 Lactuca sativa HOM05D007127 ORTHO05D008803 8.3e-24 114.8 65 81.5
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 8.3e-24 114.8 65 81.5
Hund01879 Selenicereus undatus HOM05D007127 ORTHO05D008803 1.1e-23 114.4 85 67.1
Migut.M01626 Erythranthe guttata HOM05D007127 ORTHO05D008803 1.4e-23 114.0 65 81.5
Eucgr.F03672 Eucalyptus grandis HOM05D007127 ORTHO05D008803 1.4e-23 114.0 65 80.0
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 1.4e-23 114.0 74 75.7
Gorai.002G103100 Gossypium raimondii HOM05D007127 ORTHO05D008803 1.8e-23 113.6 70 80.0
Oeu005465.2 Olea europaea HOM05D007127 ORTHO05D008803 1.8e-23 113.6 65 78.5
Ca_14836_v3 Cicer arietinum L. HOM05D007127 ORTHO05D008803 2.4e-23 113.2 65 80.0
HanXRQChr08g0232691 Helianthus annuus HOM05D007127 ORTHO05D008803 2.4e-23 113.2 65 80.0
Glyma.18G074000 Glycine max HOM05D007127 ORTHO05D008803 3.2e-23 112.8 65 80.0
Medtr3g060750 Medicago truncatula HOM05D007127 ORTHO05D008803 3.2e-23 112.8 65 80.0
TWI39G0351 Tripterygium wilfordii HOM05D007127 ORTHO05D008803 3.2e-23 112.8 63 84.1
Cc05_g15330 Coffea canephora HOM05D007127 ORTHO05D008803 4.1e-23 112.5 63 82.5
SalBow8G4011 Salvia bowleyana HOM05D007127 ORTHO05D008803 4.1e-23 112.5 65 83.1
PGSC0003DMG400014371 Solanum tuberosum HOM05D007127 ORTHO05D008803 4.1e-23 112.5 63 82.5
SGA_v2.0_scaffold171G38842 Striga asiatica HOM05D007127 ORTHO05D008803 4.1e-23 112.5 64 84.4
Aqoxy1G04096 Aquilegia oxysepala HOM05D007127 ORTHO05D008803 5.4e-23 112.1 66 80.3
THA.LOC104811685 Tarenaya hassleriana HOM05D007127 ORTHO05D008803 5.4e-23 112.1 65 80.0
MBI14_g43080_MAGBIO Magnolia biondii HOM05D007127 ORTHO05D008803 7.0e-23 111.7 65 76.9
Rhsim06G0232700 Rhododendron simsii HOM05D007127 ORTHO05D008803 9.2e-23 111.3 63 82.5
arahy.Tifrunner.gnm1.ann1.SL03ST Arachis hypogaea HOM05D007127 ORTHO05D008803 1.2e-22 110.9 70 75.7
Psat5g167080 Pisum sativum HOM05D007127 ORTHO05D008803 1.2e-22 110.9 62 82.3
Hma1.2p1_0193F.1_g083963 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 2.7e-22 109.8 65 78.5
Os02g0199300 Oryza sativa ssp. japonica HOM05D007127 ORTHO05D008803 7.8e-22 108.2 70 72.9
arahy.Tifrunner.gnm1.ann1.I2ZJD2 Arachis hypogaea HOM05D007127 ORTHO05D008803 1.7e-21 107.1 90 64.4
Zm00001eb205840 Zea mays HOM05D007127 ORTHO05D008803 2.3e-21 106.7 64 75.0
ECA246G1683 Erigeron canadensis HOM05D007127 ORTHO05D008803 3.0e-21 106.3 60 80.0
vmacro11616 Vaccinium macrocarpon HOM05D007127 ORTHO05D008803 3.9e-21 105.9 76 69.7
SEGI_17483 Sequoiadendron giganteum HOM05D007127 ORTHO05D008803 5.0e-21 105.5 65 76.9
RcHm_v2.0_Chr5g0075521 Rosa chinensis HOM05D007127 ORTHO05D008803 6.6e-21 105.1 66 75.8
A03p56780 Brassica napus HOM05D000491 ORTHO05D008803 1.5e-20 104.0 87 63.2
C07p55280 Brassica napus HOM05D007127 ORTHO05D008803 1.9e-20 103.6 88 62.5
Dinv40887 Davidia involucrata HOM05D003312 ORTHO05D003792 5.6e-20 102.1 57 78.9
Lalb_Chr15g0082331 Lupinus albus HOM05D007127 ORTHO05D008803 4.7e-19 99.0 108 52.8
Pp3c5_10020 Physcomitrium patens HOM05D007127 ORTHO05D008803 1.4e-18 97.4 63 66.7
CSS0033248 Camellia sinensis var. sinensis HOM05D007127 ORTHO05D008803 8.9e-18 94.7 51 84.3
CSS0046857 Camellia sinensis var. sinensis HOM05D007127 ORTHO05D008803 8.9e-18 94.7 51 84.3
SMO356G0109 Selaginella moellendorffii HOM05D007127 ORTHO05D008803 2.0e-17 93.6 87 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 2.6e-17 93.2 63 65.1
Glyma.08G333000 Glycine max HOM05D007127 ORTHO05D008803 7.5e-17 91.7 52 78.8
FAN11G0992 Fragaria x ananassa HOM05D007127 ORTHO05D008803 1.7e-16 90.5 57 75.4
Actinidia30375 Actinidia chinensis HOM05D007127 ORTHO05D008803 1.1e-15 87.8 50 80.0
MCO15G274 Micromonas commoda HOM05D007127 ORTHO05D008803 1.2e-14 84.3 68 52.9
Prupe.6G028700 Prunus persica HOM05D007127 ORTHO05D008803 8.6e-13 78.2 45 80.0
Cre07.g315700 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 1.5e-12 77.4 65 53.8
TAR627G0858 Trochodendron aralioides HOM05D007127 ORTHO05D008803 2.5e-12 76.6 45 77.8
VMungo0540G0661 Vigna mungo HOM05D007127 ORTHO05D008803 7.3e-12 75.1 47 76.6
Duzib213G0866 Durio zibethinus HOM05D007127 ORTHO05D008803 9.5e-12 74.7 47 76.6
COL.COLO4_07744 Corchorus olitorius HOM05D007127 ORTHO05D008803 2.8e-11 73.2 47 74.5
HPP92_021913 Vanilla planifolia HOM05D007127 ORTHO05D008803 1.4e-10 70.9 41 73.2
Hma1.2p1_0193F.1_g083966 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 3.1e-10 69.7 42 71.4
Cre02.g095450 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 2.0e-09 67.0 68 41.2
MCO15G113 Micromonas commoda HOM05D007127 ORTHO05D008803 7.5e-09 65.1 73 37.0
CBR_g31701 Chara braunii HOM05D007127 ORTHO05D008803 8.3e-08 61.6 62 41.9
FAN16G1842 Fragaria x ananassa HOM05D000097 ORTHO05D008803 1.1e-07 61.2 61 52.5
FAN16G2471 Fragaria x ananassa HOM05D007127 ORTHO05D008803 1.1e-07 61.2 61 52.5
PRCOL_00001142 Prasinoderma coloniale HOM05D007127 ORTHO05D008803 7.1e-07 58.5 63 44.4


User provided reference genes

Program Settings